Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:177453550-178317233

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sle16 1 169211172 to 177550021 8338849 QTL systematic lupus erythematosus susceptibility 16
Gm29856 1 177458966 to 177461204 2238 + lncRNA gene predicted gene, 29856
Tssr15444 1 177463028 to 177463030 2 - TSS region transcription start site region 15444
Tssr10362 1 177467284 to 177467308 24 + TSS region transcription start site region 10362
Gm37306 1 177467378 to 177476267 8889 + lincRNA gene predicted gene, 37306
Cpgi1083 1 177499085 to 177499370 285 CpG island CpG island 1083
Gm7064 1 177527490 to 177528707 1217 - pseudogene predicted gene 7064
D1Mit207 1 177530541 to 177530655 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 207
D1Mit358 1 177549906 to 177550021 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 358
Gm30013 1 177556464 to 177586221 29757 + lncRNA gene predicted gene, 30013
D1Mit404 1 177561852 to 177561968 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 404
Gm37280 1 177589021 to 177594522 5501 - lincRNA gene predicted gene, 37280
Gm37858 1 177635707 to 177636937 1230 - unclassified gene predicted gene, 37858
2310043L19Rik 1 177641542 to 177642943 1401 - lincRNA gene RIKEN cDNA 2310043L19 gene
Tssr15445 1 177642866 to 177642926 60 - TSS region transcription start site region 15445
Tssr15446 1 177643132 to 177643148 16 - TSS region transcription start site region 15446
D1Mit115 1 177680074 to 177680220 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 115
D1Mit165 1 177706183 to 177706329 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 165
Gm30115 1 177706710 to 177729769 23059 - lncRNA gene predicted gene, 30115
Tssr10363 1 177711245 to 177711251 6 + TSS region transcription start site region 10363
1700016C15Rik 1 177729814 to 177753324 23510 + protein coding gene RIKEN cDNA 1700016C15 gene
Tssr314 1 177729838 to 177729839 1 + TSS region transcription start site region 314
Tssr10364 1 177729843 to 177729869 26 + TSS region transcription start site region 10364
Tssr10365 1 177729880 to 177729893 13 + TSS region transcription start site region 10365
Tssr10366 1 177740831 to 177740855 24 + TSS region transcription start site region 10366
Tssr10367 1 177740859 to 177740897 38 + TSS region transcription start site region 10367
Tssr10368 1 177740919 to 177740996 77 + TSS region transcription start site region 10368
Tssr10369 1 177741019 to 177741034 15 + TSS region transcription start site region 10369
Tssr15447 1 177744638 to 177744643 5 - TSS region transcription start site region 15447
Adss 1 177763176 to 177796695 33519 - protein coding gene adenylosuccinate synthetase, non muscle
Tssr15448 1 177763412 to 177763440 28 - TSS region transcription start site region 15448
Tssr15449 1 177763691 to 177763702 11 - TSS region transcription start site region 15449
Tssr15450 1 177773408 to 177773413 5 - TSS region transcription start site region 15450
Tssr15451 1 177776592 to 177776607 15 - TSS region transcription start site region 15451
Gm16585 1 177786856 to 177787465 609 + pseudogene predicted gene 16585
Tssr15452 1 177795504 to 177795510 6 - TSS region transcription start site region 15452
Cpgi1084 1 177795778 to 177796921 1143 CpG island CpG island 1084
Tssr15453 1 177796414 to 177796433 19 - TSS region transcription start site region 15453
Tssr15454 1 177796451 to 177796514 63 - TSS region transcription start site region 15454
Tssr15455 1 177796535 to 177796546 11 - TSS region transcription start site region 15455
Tssr15456 1 177796610 to 177796619 9 - TSS region transcription start site region 15456
Tssr15457 1 177796637 to 177796648 11 - TSS region transcription start site region 15457
Tssr15458 1 177796663 to 177796673 10 - TSS region transcription start site region 15458
Tssr15459 1 177796674 to 177796677 3 - TSS region transcription start site region 15459
Tssr315 1 177796687 to 177796690 3 - TSS region transcription start site region 315
Tssr15460 1 177796693 to 177796700 7 - TSS region transcription start site region 15460
Tssr15461 1 177796716 to 177796725 9 - TSS region transcription start site region 15461
Catspere1 1 177808550 to 177962233 153683 + protein coding gene cation channel sperm associated auxiliary subunit epsilon 1
Tssr10370 1 177840371 to 177840391 20 + TSS region transcription start site region 10370
Cpgi1085 1 177983088 to 177983750 662 CpG island CpG island 1085
Catspere2 1 177983423 to 178172704 189281 + protein coding gene catsper channel auxiliary subunit epsilon 2
Tssr10371 1 177983427 to 177983463 36 + TSS region transcription start site region 10371
Tssr10372 1 177983466 to 177983477 11 + TSS region transcription start site region 10372
Gm37313 1 177989662 to 177998739 9077 - pseudogene predicted gene, 37313
Gm25312 1 178028033 to 178028139 106 - snRNA gene predicted gene, 25312
Cpgi1086 1 178143191 to 178143357 166 CpG island CpG island 1086
Gm8010 1 178143301 to 178144272 971 + pseudogene predicted gene 8010
Gm10519 1 178186328 to 178187883 1555 unclassified gene predicted gene 10519
Cpgi1087 1 178187308 to 178188010 702 CpG island CpG island 1087
Desi2 1 178187417 to 178252598 65181 + protein coding gene desumoylating isopeptidase 2
Tssr10373 1 178187679 to 178187713 34 + TSS region transcription start site region 10373
Tssr10374 1 178187721 to 178187725 4 + TSS region transcription start site region 10374
Tssr10375 1 178211141 to 178211190 49 + TSS region transcription start site region 10375
Tssr10376 1 178236504 to 178236508 4 + TSS region transcription start site region 10376
Gm8023 1 178266204 to 178267106 902 + pseudogene predicted gene 8023
Cpgi1088 1 178275722 to 178276977 1255 CpG island CpG island 1088
4930527J03Rik 1 178276047 to 178276641 594 - unclassified non-coding RNA gene RIKEN cDNA 4930527J03 gene
Tssr15462 1 178276636 to 178276651 15 - TSS region transcription start site region 15462
D1Mit371.1b 1 178283043 to 178283154 111 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 371.1b
D1Mit371 1 178283143 to 178283287 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 371
Gm46174 1 178283380 to 178299913 16533 - lncRNA gene predicted gene, 46174
Gm37486 1 178299396 to 178299800 404 + pseudogene predicted gene, 37486
Tssr10377 1 178299499 to 178299514 15 + TSS region transcription start site region 10377
B230369F24Rik 1 178314003 to 178315735 1732 - antisense lncRNA gene RIKEN cDNA B230369F24 gene
Tssr15463 1 178315472 to 178315482 10 - TSS region transcription start site region 15463