Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:17694094-20724101

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm16070 1 17676027 to 17727646 51619 - antisense lncRNA gene predicted gene 16070
Tssr6022 1 17727034 to 17727061 27 + TSS region transcription start site region 6022
Crispld1 1 17727045 to 17766344 39299 + protein coding gene cysteine-rich secretory protein LCCL domain containing 1
Tssr6023 1 17727381 to 17727391 10 + TSS region transcription start site region 6023
Tssr6024 1 17727409 to 17727424 15 + TSS region transcription start site region 6024
Gm28153 1 17741915 to 17805417 63502 - antisense lncRNA gene predicted gene 28153
Tssr6025 1 17946997 to 17947007 10 + TSS region transcription start site region 6025
Gm7690 1 17947041 to 17948439 1398 + pseudogene predicted gene 7690
Gm18775 1 17993010 to 17999622 6612 - pseudogene predicted gene, 18775
Gm17969 1 17993825 to 17997483 3658 + pseudogene predicted gene, 17969
Gm28756 1 17994462 to 18059056 64594 - unclassified non-coding RNA gene predicted gene 28756
Gm28755 1 18005961 to 18016186 10225 - pseudogene predicted gene 28755
Gm45784 1 18048100 to 18058269 10169 - pseudogene predicted gene 45784
Cpgi62 1 18057728 to 18059061 1333 CpG island CpG island 62
Tssr11064 1 18058788 to 18058802 14 - TSS region transcription start site region 11064
Crisp4 1 18115191 to 18145902 30711 - protein coding gene cysteine-rich secretory protein 4
Tssr11065 1 18145895 to 18145922 27 - TSS region transcription start site region 11065
Defb44-ps 1 18210053 to 18223564 13511 - pseudogene defensin beta 44, pseudogene
Tssr11066 1 18223570 to 18223582 12 - TSS region transcription start site region 11066
Tssr11067 1 18223603 to 18223608 5 - TSS region transcription start site region 11067
Defb18 1 18236473 to 18237443 970 - protein coding gene defensin beta 18
Tssr11068 1 18237473 to 18237478 5 - TSS region transcription start site region 11068
D1Ertd230e 1 18247918 to 18248152 234 DNA segment DNA segment, Chr 1, ERATO Doi 230, expressed
Defb41 1 18250980 to 18265138 14158 - protein coding gene defensin beta 41
Gm17837 1 18262395 to 18263379 984 - pseudogene predicted gene, 17837
Tssr11069 1 18265130 to 18265141 11 - TSS region transcription start site region 11069
D1Mit230 1 18333801 to 18333927 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 230
Gm5252 1 18708428 to 18709336 908 + pseudogene predicted gene 5252
Gm24075 1 18969762 to 18969833 71 - snoRNA gene predicted gene, 24075
Gm28343 1 19037266 to 19037377 111 + pseudogene predicted gene 28343
Gm28344 1 19062857 to 19063135 278 + pseudogene predicted gene 28344
Gm15825 1 19063300 to 19075464 12164 - antisense lncRNA gene predicted gene 15825
Cpgi63 1 19096944 to 19097168 224 CpG island CpG island 63
Tfap2d 1 19103022 to 19166346 63324 + protein coding gene transcription factor AP-2, delta
Tssr6026 1 19103031 to 19103043 12 + TSS region transcription start site region 6026
Cpgi64 1 19104091 to 19104915 824 CpG island CpG island 64
Tssr6027 1 19104131 to 19104138 7 + TSS region transcription start site region 6027
Tssr6028 1 19104173 to 19104188 15 + TSS region transcription start site region 6028
Tssr6029 1 19104688 to 19104693 5 + TSS region transcription start site region 6029
Gm10075 1 19153422 to 19153966 544 - pseudogene predicted gene 10075
D1Mit298 1 19182865 to 19183007 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 298
Tfap2b 1 19208914 to 19238576 29662 + protein coding gene transcription factor AP-2 beta
Tssr6030 1 19208940 to 19208967 27 + TSS region transcription start site region 6030
Tssr6031 1 19208983 to 19208994 11 + TSS region transcription start site region 6031
Tssr6032 1 19208998 to 19209011 13 + TSS region transcription start site region 6032
Tssr6033 1 19209014 to 19209033 19 + TSS region transcription start site region 6033
Tssr6034 1 19209038 to 19209053 15 + TSS region transcription start site region 6034
Tssr6035 1 19209070 to 19209089 19 + TSS region transcription start site region 6035
Tssr6036 1 19209094 to 19209101 7 + TSS region transcription start site region 6036
Tssr6037 1 19209112 to 19209126 14 + TSS region transcription start site region 6037
Tssr6038 1 19209140 to 19209153 13 + TSS region transcription start site region 6038
Tssr6039 1 19209155 to 19209177 22 + TSS region transcription start site region 6039
Cpgi65 1 19209681 to 19210435 754 CpG island CpG island 65
Tssr6040 1 19212104 to 19212106 2 + TSS region transcription start site region 6040
Tssr6041 1 19212271 to 19212273 2 + TSS region transcription start site region 6041
Tssr6042 1 19212445 to 19212468 23 + TSS region transcription start site region 6042
Cpgi66 1 19213877 to 19214474 597 CpG island CpG island 66
Cpgi67 1 19234063 to 19234330 267 CpG island CpG island 67
Tssr6043 1 19235326 to 19235332 6 + TSS region transcription start site region 6043
Tssr6044 1 19235493 to 19235503 10 + TSS region transcription start site region 6044
Tssr6045 1 19235769 to 19235782 13 + TSS region transcription start site region 6045
Cpgi68 1 19236530 to 19236897 367 CpG island CpG island 68
Tssr6046 1 19237406 to 19237417 11 + TSS region transcription start site region 6046
Tssr6047 1 19237601 to 19237612 11 + TSS region transcription start site region 6047
Gm28340 1 19242725 to 19243769 1044 + lincRNA gene predicted gene 28340
Gm28341 1 19320226 to 19320697 471 - pseudogene predicted gene 28341
Gm4849 1 19330939 to 19333184 2245 + pseudogene predicted gene 4849
Tssr11070 1 19337537 to 19337541 4 - TSS region transcription start site region 11070
Gm24633 1 19513855 to 19513919 64 - snoRNA gene predicted gene, 24633
Tssr6048 1 19606089 to 19606100 11 + TSS region transcription start site region 6048
Gm32651 1 19606089 to 19636734 30645 + lncRNA gene predicted gene, 32651
Gm38382 1 19614269 to 19616767 2498 + unclassified gene predicted gene, 38382
Adip1 1 19811970 to 19812128 158 QTL adiposity 1
D1Mit3 1 19811970 to 19812128 158 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 3
Sle10 1 19811970 to 19812128 158 QTL systematic lupus erythematosus susceptibility 10
Pkhd1 1 20057779 to 20618064 560285 - protein coding gene polycystic kidney and hepatic disease 1
Gm37315 1 20062070 to 20065548 3478 - unclassified gene predicted gene, 37315
Tssr11071 1 20167085 to 20167090 5 - TSS region transcription start site region 11071
Tssr17 1 20356414 to 20356421 7 + TSS region transcription start site region 17
Tssr6049 1 20356453 to 20356485 32 + TSS region transcription start site region 6049
4930486I03Rik 1 20356454 to 20392300 35846 + antisense lncRNA gene RIKEN cDNA 4930486I03 gene
Gm15795 1 20444258 to 20444810 552 - pseudogene predicted gene 15795
Gm24162 1 20444811 to 20444912 101 - snRNA gene predicted gene, 24162
D1Mit52 1 20478908 to 20479054 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 52
D1Mit52.2 1 20479080 to 20479220 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 52.2
Tssr11072 1 20511703 to 20511706 3 - TSS region transcription start site region 11072
Tssr11073 1 20565250 to 20565258 8 - TSS region transcription start site region 11073
Tssr11074 1 20586909 to 20586913 4 - TSS region transcription start site region 11074
D1Mit276 1 20589545 to 20589684 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 276
Tssr18 1 20606080 to 20606084 4 + TSS region transcription start site region 18
Tssr11075 1 20617973 to 20617990 17 - TSS region transcription start site region 11075
Tssr11076 1 20617992 to 20618089 97 - TSS region transcription start site region 11076
Tssr11077 1 20618092 to 20618097 5 - TSS region transcription start site region 11077
Tssr11078 1 20626820 to 20626842 22 - TSS region transcription start site region 11078
Tssr6050 1 20669879 to 20669884 5 + TSS region transcription start site region 6050
Gm28653 1 20669882 to 20684298 14416 + lincRNA gene predicted gene 28653
Lincmd1 1 20669882 to 20682958 13076 + lincRNA gene long intergenic non-protein coding RNA of muscle differentiation 1
Tssr6051 1 20670066 to 20670081 15 + TSS region transcription start site region 6051
Mirc37 1 20679010 to 20682887 3877 complex/cluster/region microRNA cluster 37, including Mir133b through Mir206
Mir206 1 20679010 to 20679082 72 + miRNA gene microRNA 206
Mir133b 1 20682769 to 20682887 118 + miRNA gene microRNA 133b
Tssr6052 1 20682855 to 20682857 2 + TSS region transcription start site region 6052
1700113H21Rik 1 20714276 to 20714742 466 unclassified gene RIKEN cDNA 1700113H21 gene