Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:176820073-177458203

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdccag8 1 176814660 to 177020437 205777 + protein coding gene serologically defined colon cancer antigen 8
Hmga2-ps1 1 176834624 to 176836133 1509 - pseudogene high mobility group AT-hook 2, pseudogene 1
Cpgi1075 1 176835418 to 176835862 444 CpG island CpG island 1075
Tssr10334 1 176835519 to 176835532 13 + TSS region transcription start site region 10334
Gm38158 1 176835724 to 176836062 338 + pseudogene predicted gene, 38158
Tssr15428 1 176835938 to 176835951 13 - TSS region transcription start site region 15428
Tssr15429 1 176836135 to 176836176 41 - TSS region transcription start site region 15429
Tssr310 1 176837532 to 176837538 6 + TSS region transcription start site region 310
Gm38053 1 176854400 to 176854559 159 - pseudogene predicted gene, 38053
Tssr10335 1 176874399 to 176874410 11 + TSS region transcription start site region 10335
Gm25993 1 176879834 to 176879913 79 + miRNA gene predicted gene, 25993
Gm37246 1 176881571 to 176882405 834 + pseudogene predicted gene, 37246
Gm37490 1 176889507 to 176890230 723 + unclassified gene predicted gene, 37490
Tssr10336 1 176902891 to 176902895 4 + TSS region transcription start site region 10336
Gm15423 1 176927999 to 176932711 4712 - antisense lncRNA gene predicted gene 15423
Gm37519 1 176974236 to 176976445 2209 + unclassified gene predicted gene, 37519
Cpgi1076 1 176993752 to 176993960 208 CpG island CpG island 1076
Tssr10337 1 176996952 to 176996969 17 + TSS region transcription start site region 10337
Tssr10338 1 176997827 to 176997869 42 + TSS region transcription start site region 10338
Cpgi1077 1 176997930 to 176998315 385 CpG island CpG island 1077
Akt3 1 177020073 to 177258203 238130 - protein coding gene thymoma viral proto-oncogene 3
Tssr15430 1 177033706 to 177033709 3 - TSS region transcription start site region 15430
Gm37960 1 177035040 to 177036936 1896 - unclassified gene predicted gene, 37960
Gm37106 1 177045242 to 177046773 1531 - unclassified gene predicted gene, 37106
Tssr15431 1 177050199 to 177050213 14 - TSS region transcription start site region 15431
Tssr15432 1 177064484 to 177064505 21 - TSS region transcription start site region 15432
Tssr15433 1 177071325 to 177071344 19 - TSS region transcription start site region 15433
Gm37598 1 177074484 to 177075784 1300 - unclassified gene predicted gene, 37598
Tssr15434 1 177131067 to 177131078 11 - TSS region transcription start site region 15434
Gm38146 1 177134161 to 177135453 1292 - unclassified gene predicted gene, 38146
Tssr10339 1 177139858 to 177139864 6 + TSS region transcription start site region 10339
Gm37706 1 177168098 to 177170862 2764 - unclassified gene predicted gene, 37706
Tssr15435 1 177193932 to 177193953 21 - TSS region transcription start site region 15435
Tssr15436 1 177203904 to 177203913 9 - TSS region transcription start site region 15436
Tssr15437 1 177207415 to 177207421 6 - TSS region transcription start site region 15437
Gm37463 1 177229891 to 177230686 795 - unclassified gene predicted gene, 37463
Tssr15438 1 177239125 to 177239127 2 - TSS region transcription start site region 15438
Cpgi1078 1 177257149 to 177259217 2068 CpG island CpG island 1078
Tssr10340 1 177257443 to 177257454 11 + TSS region transcription start site region 10340
Gm36904 1 177257681 to 177370748 113067 + lncRNA gene predicted gene, 36904
Tssr15439 1 177258182 to 177258214 32 - TSS region transcription start site region 15439
Tssr15440 1 177258315 to 177258438 123 - TSS region transcription start site region 15440
Tssr10341 1 177258508 to 177258528 20 + TSS region transcription start site region 10341
Tssr10342 1 177258796 to 177258808 12 + TSS region transcription start site region 10342
Tssr15441 1 177258829 to 177258857 28 - TSS region transcription start site region 15441
Tssr311 1 177258949 to 177258958 9 - TSS region transcription start site region 311
Tssr15442 1 177260504 to 177260531 27 - TSS region transcription start site region 15442
Gm38328 1 177269352 to 177269668 316 + pseudogene predicted gene, 38328
Tgl5 1 177269591 to 177269591 0 QTL triglyceride 5
Phdlc5 1 177269591 to 177269591 0 QTL plasma HDL cholesterol 5
Ath9 1 177285202 to 177285317 115 QTL atherosclerosis 9
D1Mit359 1 177285202 to 177285317 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 359
Cpgi1079 1 177322728 to 177323246 518 CpG island CpG island 1079
Cpgi1080 1 177338834 to 177339214 380 CpG island CpG island 1080
Gm26801 1 177428338 to 177443270 14932 - antisense lncRNA gene predicted gene, 26801
Cpgi1081 1 177441420 to 177443545 2125 CpG island CpG island 1081
Tssr10343 1 177442280 to 177442378 98 + TSS region transcription start site region 10343
Zbtb18 1 177442356 to 177450764 8408 + protein coding gene zinc finger and BTB domain containing 18
Tssr10344 1 177442383 to 177442394 11 + TSS region transcription start site region 10344
Tssr10345 1 177442412 to 177442426 14 + TSS region transcription start site region 10345
Tssr10346 1 177442494 to 177442523 29 + TSS region transcription start site region 10346
Tssr10347 1 177442535 to 177442547 12 + TSS region transcription start site region 10347
Tssr15443 1 177443081 to 177443085 4 - TSS region transcription start site region 15443
Tssr10348 1 177444633 to 177444645 12 + TSS region transcription start site region 10348
Tssr10349 1 177444653 to 177444669 16 + TSS region transcription start site region 10349
Tssr10350 1 177444689 to 177444700 11 + TSS region transcription start site region 10350
Tssr10351 1 177444731 to 177444742 11 + TSS region transcription start site region 10351
Tssr10352 1 177445660 to 177445672 12 + TSS region transcription start site region 10352
Tssr10353 1 177447115 to 177447135 20 + TSS region transcription start site region 10353
Tssr10354 1 177447147 to 177447156 9 + TSS region transcription start site region 10354
Tssr312 1 177447159 to 177447178 19 + TSS region transcription start site region 312
Tssr10355 1 177447189 to 177447200 11 + TSS region transcription start site region 10355
Tssr10356 1 177447277 to 177447291 14 + TSS region transcription start site region 10356
Tssr10357 1 177447353 to 177447375 22 + TSS region transcription start site region 10357
Tssr10358 1 177447447 to 177447458 11 + TSS region transcription start site region 10358
Tssr10359 1 177447464 to 177447473 9 + TSS region transcription start site region 10359
Tssr313 1 177447850 to 177447862 12 + TSS region transcription start site region 313
Cpgi1082 1 177448070 to 177448550 480 CpG island CpG island 1082
Tssr10360 1 177448199 to 177448210 11 + TSS region transcription start site region 10360
Tssr10361 1 177448243 to 177448251 8 + TSS region transcription start site region 10361