Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:176219014-177409025

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scgq1 1 156774467 to 176435127 19660660 QTL spontaneous crescentic glomerulonephritis QTL 1
Pld5 1 175962306 to 176275312 313006 - protein coding gene phospholipase D family, member 5
Cpgi1071 1 176223320 to 176223481 161 CpG island CpG island 1071
Cpgi1072 1 176274583 to 176275797 1214 CpG island CpG island 1072
Tssr15411 1 176275283 to 176275308 25 - TSS region transcription start site region 15411
Gm38101 1 176276213 to 176279769 3556 + lincRNA gene predicted gene, 38101
Gm17965 1 176339130 to 176339643 513 - pseudogene predicted gene, 17965
Gm38152 1 176370155 to 176373720 3565 - unclassified gene predicted gene, 38152
Gm36536 1 176430111 to 176527269 97158 - lincRNA gene predicted gene, 36536
D1Mit166 1 176435007 to 176435127 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 166
Pcho1 1 176435007 to 176435127 120 QTL plasma cholesterol 1
D1Dcr18 1 176435008 to 176435131 123 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 18
D1Jpk1 1 176593800 to 176593954 154 DNA segment DNA segment, Chr 1, Japan, Kominami 1
Gm36586 1 176597509 to 176614764 17255 - lncRNA gene predicted gene, 36586
Tssr15412 1 176614761 to 176614770 9 - TSS region transcription start site region 15412
Gm17966 1 176642021 to 176642558 537 - pseudogene predicted gene, 17966
Gm26104 1 176700617 to 176700724 107 + snRNA gene predicted gene, 26104
Cpgi1073 1 176725004 to 176725289 285 CpG island CpG island 1073
Cep170 1 176733653 to 176814067 80414 - protein coding gene centrosomal protein 170
Tssr15413 1 176734209 to 176734213 4 - TSS region transcription start site region 15413
Tssr15414 1 176735012 to 176735029 17 - TSS region transcription start site region 15414
3110062G12Rik 1 176745564 to 176746982 1418 - unclassified gene RIKEN cDNA 3110062G12 gene
Gm38104 1 176751521 to 176753415 1894 - unclassified gene predicted gene, 38104
Tssr15415 1 176754377 to 176754407 30 - TSS region transcription start site region 15415
Tssr15416 1 176754412 to 176754423 11 - TSS region transcription start site region 15416
Gm36992 1 176754517 to 176758876 4359 + antisense lncRNA gene predicted gene, 36992
Tssr10330 1 176754520 to 176754531 11 + TSS region transcription start site region 10330
Tssr15417 1 176756315 to 176756337 22 - TSS region transcription start site region 15417
Tssr15418 1 176756715 to 176756726 11 - TSS region transcription start site region 15418
Tssr15419 1 176756898 to 176756901 3 - TSS region transcription start site region 15419
Mir350 1 176772325 to 176772423 98 - miRNA gene microRNA 350
Tssr10331 1 176779225 to 176779227 2 + TSS region transcription start site region 10331
Gm25288 1 176793956 to 176794220 264 + unclassified non-coding RNA gene predicted gene, 25288
Tssr15420 1 176797315 to 176797320 5 - TSS region transcription start site region 15420
Tssr15421 1 176808968 to 176808991 23 - TSS region transcription start site region 15421
Cpgi1074 1 176813231 to 176815084 1853 CpG island CpG island 1074
Tssr15422 1 176813920 to 176813931 11 - TSS region transcription start site region 15422
Tssr15423 1 176813943 to 176813960 17 - TSS region transcription start site region 15423
Tssr15424 1 176814014 to 176814025 11 - TSS region transcription start site region 15424
Tssr15425 1 176814041 to 176814064 23 - TSS region transcription start site region 15425
Tssr15426 1 176814070 to 176814133 63 - TSS region transcription start site region 15426
Tssr15427 1 176814166 to 176814189 23 - TSS region transcription start site region 15427
Sdccag8 1 176814660 to 177020437 205777 + protein coding gene serologically defined colon cancer antigen 8
Tssr10332 1 176814852 to 176814910 58 + TSS region transcription start site region 10332
Tssr10333 1 176814911 to 176814922 11 + TSS region transcription start site region 10333
Hmga2-ps1 1 176834624 to 176836133 1509 - pseudogene high mobility group AT-hook 2, pseudogene 1
Cpgi1075 1 176835418 to 176835862 444 CpG island CpG island 1075
Tssr10334 1 176835519 to 176835532 13 + TSS region transcription start site region 10334
Gm38158 1 176835724 to 176836062 338 + pseudogene predicted gene, 38158
Tssr15428 1 176835938 to 176835951 13 - TSS region transcription start site region 15428
Tssr15429 1 176836135 to 176836176 41 - TSS region transcription start site region 15429
Tssr310 1 176837532 to 176837538 6 + TSS region transcription start site region 310
Gm38053 1 176854400 to 176854559 159 - pseudogene predicted gene, 38053
Tssr10335 1 176874399 to 176874410 11 + TSS region transcription start site region 10335
Gm25993 1 176879834 to 176879913 79 + miRNA gene predicted gene, 25993
Gm37246 1 176881571 to 176882405 834 + pseudogene predicted gene, 37246
Gm37490 1 176889507 to 176890230 723 + unclassified gene predicted gene, 37490
Tssr10336 1 176902891 to 176902895 4 + TSS region transcription start site region 10336
Gm15423 1 176927999 to 176932711 4712 - antisense lncRNA gene predicted gene 15423
Gm37519 1 176974236 to 176976445 2209 + unclassified gene predicted gene, 37519
Cpgi1076 1 176993752 to 176993960 208 CpG island CpG island 1076
Tssr10337 1 176996952 to 176996969 17 + TSS region transcription start site region 10337
Tssr10338 1 176997827 to 176997869 42 + TSS region transcription start site region 10338
Cpgi1077 1 176997930 to 176998315 385 CpG island CpG island 1077
Akt3 1 177020073 to 177258203 238130 - protein coding gene thymoma viral proto-oncogene 3
Tssr15430 1 177033706 to 177033709 3 - TSS region transcription start site region 15430
Gm37960 1 177035040 to 177036936 1896 - unclassified gene predicted gene, 37960
Gm37106 1 177045242 to 177046773 1531 - unclassified gene predicted gene, 37106
Tssr15431 1 177050199 to 177050213 14 - TSS region transcription start site region 15431
Tssr15432 1 177064484 to 177064505 21 - TSS region transcription start site region 15432
Tssr15433 1 177071325 to 177071344 19 - TSS region transcription start site region 15433
Gm37598 1 177074484 to 177075784 1300 - unclassified gene predicted gene, 37598
Tssr15434 1 177131067 to 177131078 11 - TSS region transcription start site region 15434
Gm38146 1 177134161 to 177135453 1292 - unclassified gene predicted gene, 38146
Tssr10339 1 177139858 to 177139864 6 + TSS region transcription start site region 10339
Gm37706 1 177168098 to 177170862 2764 - unclassified gene predicted gene, 37706
Tssr15435 1 177193932 to 177193953 21 - TSS region transcription start site region 15435
Tssr15436 1 177203904 to 177203913 9 - TSS region transcription start site region 15436
Tssr15437 1 177207415 to 177207421 6 - TSS region transcription start site region 15437
Gm37463 1 177229891 to 177230686 795 - unclassified gene predicted gene, 37463
Tssr15438 1 177239125 to 177239127 2 - TSS region transcription start site region 15438
Cpgi1078 1 177257149 to 177259217 2068 CpG island CpG island 1078
Tssr10340 1 177257443 to 177257454 11 + TSS region transcription start site region 10340
Gm36904 1 177257681 to 177370748 113067 + lncRNA gene predicted gene, 36904
Tssr15439 1 177258182 to 177258214 32 - TSS region transcription start site region 15439
Tssr15440 1 177258315 to 177258438 123 - TSS region transcription start site region 15440
Tssr10341 1 177258508 to 177258528 20 + TSS region transcription start site region 10341
Tssr10342 1 177258796 to 177258808 12 + TSS region transcription start site region 10342
Tssr15441 1 177258829 to 177258857 28 - TSS region transcription start site region 15441
Tssr311 1 177258949 to 177258958 9 - TSS region transcription start site region 311
Tssr15442 1 177260504 to 177260531 27 - TSS region transcription start site region 15442
Gm38328 1 177269352 to 177269668 316 + pseudogene predicted gene, 38328
Tgl5 1 177269591 to 177269591 0 QTL triglyceride 5
Phdlc5 1 177269591 to 177269591 0 QTL plasma HDL cholesterol 5
Ath9 1 177285202 to 177285317 115 QTL atherosclerosis 9
D1Mit359 1 177285202 to 177285317 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 359
Cpgi1079 1 177322728 to 177323246 518 CpG island CpG island 1079
Cpgi1080 1 177338834 to 177339214 380 CpG island CpG island 1080