Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:175668320-176778481

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scgq1 1 156774467 to 176435127 19660660 QTL spontaneous crescentic glomerulonephritis QTL 1
Opn3 1 175662421 to 175692776 30355 - protein coding gene opsin 3
Chml 1 175682237 to 175688353 6116 - protein coding gene choroideremia-like
Cpgi1069 1 175691914 to 175693122 1208 CpG island CpG island 1069
Tssr15400 1 175692590 to 175692615 25 - TSS region transcription start site region 15400
Tssr15401 1 175692624 to 175692663 39 - TSS region transcription start site region 15401
Gm39707 1 175693046 to 175696660 3614 + lncRNA gene predicted gene, 39707
D1Mit271 1 175698343 to 175698473 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 271
Tssr10325 1 175698552 to 175698560 8 + TSS region transcription start site region 10325
Tssr10326 1 175698586 to 175698600 14 + TSS region transcription start site region 10326
Wdr64 1 175698593 to 175815734 117141 + protein coding gene WD repeat domain 64
Tssr10327 1 175767010 to 175767055 45 + TSS region transcription start site region 10327
Tssr10328 1 175767064 to 175767073 9 + TSS region transcription start site region 10328
Gm25560 1 175800514 to 175800689 175 + snRNA gene predicted gene, 25560
Brwt7 1 175833101 to 175833101 0 QTL brain weight 7
Gm36360 1 175871618 to 175880755 9137 - lncRNA gene predicted gene, 36360
Cpgi1070 1 175880440 to 175881306 866 CpG island CpG island 1070
Exo1 1 175880760 to 175911396 30636 + protein coding gene exonuclease 1
Tssr10329 1 175880775 to 175880808 33 + TSS region transcription start site region 10329
Gm23805 1 175904545 to 175904651 106 + snRNA gene predicted gene, 23805
C130098C10Rik 1 175912387 to 175913488 1101 unclassified gene RIKEN cDNA C130098C10 gene
Becn2 1 175920329 to 175922225 1896 + protein coding gene beclin 2
Gm38100 1 175920329 to 175922225 1896 + protein coding gene predicted gene, 38100
Gm37668 1 175955455 to 175957398 1943 - unclassified gene predicted gene, 37668
Pld5 1 175962306 to 176275312 313006 - protein coding gene phospholipase D family, member 5
Rbm8a2 1 175978218 to 175978943 725 - protein coding gene RNA binding motif protein 8A2
Gm38081 1 176031079 to 176032723 1644 - unclassified gene predicted gene, 38081
Gm37916 1 176179201 to 176181635 2434 + unclassified gene predicted gene, 37916
Gm46173 1 176207055 to 176213620 6565 + lncRNA gene predicted gene, 46173
Tssr15402 1 176213673 to 176213684 11 - TSS region transcription start site region 15402
Tssr15403 1 176213704 to 176213718 14 - TSS region transcription start site region 15403
Tssr15404 1 176213740 to 176213747 7 - TSS region transcription start site region 15404
Tssr15405 1 176213769 to 176213779 10 - TSS region transcription start site region 15405
Tssr15406 1 176213934 to 176213943 9 - TSS region transcription start site region 15406
Tssr15407 1 176213958 to 176213967 9 - TSS region transcription start site region 15407
Tssr15408 1 176213974 to 176213977 3 - TSS region transcription start site region 15408
Tssr15409 1 176214015 to 176214024 9 - TSS region transcription start site region 15409
Tssr15410 1 176214041 to 176214047 6 - TSS region transcription start site region 15410
Cpgi1071 1 176223320 to 176223481 161 CpG island CpG island 1071
Cpgi1072 1 176274583 to 176275797 1214 CpG island CpG island 1072
Tssr15411 1 176275283 to 176275308 25 - TSS region transcription start site region 15411
Gm38101 1 176276213 to 176279769 3556 + lincRNA gene predicted gene, 38101
Gm17965 1 176339130 to 176339643 513 - pseudogene predicted gene, 17965
Gm38152 1 176370155 to 176373720 3565 - unclassified gene predicted gene, 38152
Gm36536 1 176430111 to 176527269 97158 - lincRNA gene predicted gene, 36536
D1Mit166 1 176435007 to 176435127 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 166
Pcho1 1 176435007 to 176435127 120 QTL plasma cholesterol 1
D1Dcr18 1 176435008 to 176435131 123 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 18
D1Jpk1 1 176593800 to 176593954 154 DNA segment DNA segment, Chr 1, Japan, Kominami 1
Gm36586 1 176597509 to 176614764 17255 - lncRNA gene predicted gene, 36586
Tssr15412 1 176614761 to 176614770 9 - TSS region transcription start site region 15412
Gm17966 1 176642021 to 176642558 537 - pseudogene predicted gene, 17966
Gm26104 1 176700617 to 176700724 107 + snRNA gene predicted gene, 26104
Cpgi1073 1 176725004 to 176725289 285 CpG island CpG island 1073
Cep170 1 176733653 to 176814067 80414 - protein coding gene centrosomal protein 170
Tssr15413 1 176734209 to 176734213 4 - TSS region transcription start site region 15413
Tssr15414 1 176735012 to 176735029 17 - TSS region transcription start site region 15414
3110062G12Rik 1 176745564 to 176746982 1418 - unclassified gene RIKEN cDNA 3110062G12 gene
Gm38104 1 176751521 to 176753415 1894 - unclassified gene predicted gene, 38104
Tssr15415 1 176754377 to 176754407 30 - TSS region transcription start site region 15415
Tssr15416 1 176754412 to 176754423 11 - TSS region transcription start site region 15416
Gm36992 1 176754517 to 176758876 4359 + antisense lncRNA gene predicted gene, 36992
Tssr10330 1 176754520 to 176754531 11 + TSS region transcription start site region 10330
Tssr15417 1 176756315 to 176756337 22 - TSS region transcription start site region 15417
Tssr15418 1 176756715 to 176756726 11 - TSS region transcription start site region 15418
Tssr15419 1 176756898 to 176756901 3 - TSS region transcription start site region 15419
Mir350 1 176772325 to 176772423 98 - miRNA gene microRNA 350