Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:175636251-181578094

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698 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eila1 1 112081092 to 175641372 63560280 QTL ethanol induced locomotor activity 1
Ctex 1 153681660 to 175641372 21959712 QTL Ctla4 expression QTL
Scgq1 1 156774467 to 176435127 19660660 QTL spontaneous crescentic glomerulonephritis QTL 1
Sle16 1 169211172 to 177550021 8338849 QTL systematic lupus erythematosus susceptibility 16
Tcq11 1 169310000 to 179820000 10510000 QTL total cholesterol QTL 11
Cplaq13 1 173004198 to 181573094 8568896 QTL circadian period of locomotor activity 13
Kmo 1 175632193 to 175660853 28660 + protein coding gene kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
Tssr10324 1 175637879 to 175637895 16 + TSS region transcription start site region 10324
Lmr20c 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20c
Sluc37 1 175641251 to 194429220 18787969 QTL susceptibility to lung cancer 37
D1Mit403 1 175641251 to 175641372 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 403
Lmr20 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20
Lmr20a 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20a
Lmr20b 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20b
Yaa4 1 175641251 to 175641372 121 QTL Y-linked autoimmune acceleration QTL 4
Sle9 1 175641251 to 175641372 121 QTL systematic lupus erythematosus susceptibility 9
Hpic2 1 175641251 to 181573094 5931843 QTL haloperidol induced catalepsy 2
Opn3 1 175662421 to 175692776 30355 - protein coding gene opsin 3
Chml 1 175682237 to 175688353 6116 - protein coding gene choroideremia-like
Cpgi1069 1 175691914 to 175693122 1208 CpG island CpG island 1069
Tssr15400 1 175692590 to 175692615 25 - TSS region transcription start site region 15400
Tssr15401 1 175692624 to 175692663 39 - TSS region transcription start site region 15401
Gm39707 1 175693046 to 175696660 3614 + lncRNA gene predicted gene, 39707
D1Mit271 1 175698343 to 175698473 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 271
Tssr10325 1 175698552 to 175698560 8 + TSS region transcription start site region 10325
Tssr10326 1 175698586 to 175698600 14 + TSS region transcription start site region 10326
Wdr64 1 175698593 to 175815734 117141 + protein coding gene WD repeat domain 64
Tssr10327 1 175767010 to 175767055 45 + TSS region transcription start site region 10327
Tssr10328 1 175767064 to 175767073 9 + TSS region transcription start site region 10328
Gm25560 1 175800514 to 175800689 175 + snRNA gene predicted gene, 25560
Brwt7 1 175833101 to 175833101 0 QTL brain weight 7
Gm36360 1 175871618 to 175880755 9137 - lncRNA gene predicted gene, 36360
Cpgi1070 1 175880440 to 175881306 866 CpG island CpG island 1070
Exo1 1 175880760 to 175911396 30636 + protein coding gene exonuclease 1
Tssr10329 1 175880775 to 175880808 33 + TSS region transcription start site region 10329
Gm23805 1 175904545 to 175904651 106 + snRNA gene predicted gene, 23805
C130098C10Rik 1 175912387 to 175913488 1101 unclassified gene RIKEN cDNA C130098C10 gene
Becn2 1 175920329 to 175922225 1896 + protein coding gene beclin 2
Gm38100 1 175920329 to 175922225 1896 + protein coding gene predicted gene, 38100
Gm37668 1 175955455 to 175957398 1943 - unclassified gene predicted gene, 37668
Pld5 1 175962306 to 176275312 313006 - protein coding gene phospholipase D family, member 5
Rbm8a2 1 175978218 to 175978943 725 - protein coding gene RNA binding motif protein 8A2
Gm38081 1 176031079 to 176032723 1644 - unclassified gene predicted gene, 38081
Gm37916 1 176179201 to 176181635 2434 + unclassified gene predicted gene, 37916
Gm46173 1 176207055 to 176213620 6565 + lncRNA gene predicted gene, 46173
Tssr15402 1 176213673 to 176213684 11 - TSS region transcription start site region 15402
Tssr15403 1 176213704 to 176213718 14 - TSS region transcription start site region 15403
Tssr15404 1 176213740 to 176213747 7 - TSS region transcription start site region 15404
Tssr15405 1 176213769 to 176213779 10 - TSS region transcription start site region 15405
Tssr15406 1 176213934 to 176213943 9 - TSS region transcription start site region 15406
Tssr15407 1 176213958 to 176213967 9 - TSS region transcription start site region 15407
Tssr15408 1 176213974 to 176213977 3 - TSS region transcription start site region 15408
Tssr15409 1 176214015 to 176214024 9 - TSS region transcription start site region 15409
Tssr15410 1 176214041 to 176214047 6 - TSS region transcription start site region 15410
Cpgi1071 1 176223320 to 176223481 161 CpG island CpG island 1071
Cpgi1072 1 176274583 to 176275797 1214 CpG island CpG island 1072
Tssr15411 1 176275283 to 176275308 25 - TSS region transcription start site region 15411
Gm38101 1 176276213 to 176279769 3556 + lincRNA gene predicted gene, 38101
Gm17965 1 176339130 to 176339643 513 - pseudogene predicted gene, 17965
Gm38152 1 176370155 to 176373720 3565 - unclassified gene predicted gene, 38152
Gm36536 1 176430111 to 176527269 97158 - lincRNA gene predicted gene, 36536
D1Mit166 1 176435007 to 176435127 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 166
Pcho1 1 176435007 to 176435127 120 QTL plasma cholesterol 1
D1Dcr18 1 176435008 to 176435131 123 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 18
D1Jpk1 1 176593800 to 176593954 154 DNA segment DNA segment, Chr 1, Japan, Kominami 1
Gm36586 1 176597509 to 176614764 17255 - lncRNA gene predicted gene, 36586
Tssr15412 1 176614761 to 176614770 9 - TSS region transcription start site region 15412
Gm17966 1 176642021 to 176642558 537 - pseudogene predicted gene, 17966
Gm26104 1 176700617 to 176700724 107 + snRNA gene predicted gene, 26104
Cpgi1073 1 176725004 to 176725289 285 CpG island CpG island 1073
Cep170 1 176733653 to 176814067 80414 - protein coding gene centrosomal protein 170
Tssr15413 1 176734209 to 176734213 4 - TSS region transcription start site region 15413
Tssr15414 1 176735012 to 176735029 17 - TSS region transcription start site region 15414
3110062G12Rik 1 176745564 to 176746982 1418 - unclassified gene RIKEN cDNA 3110062G12 gene
Gm38104 1 176751521 to 176753415 1894 - unclassified gene predicted gene, 38104
Tssr15415 1 176754377 to 176754407 30 - TSS region transcription start site region 15415
Tssr15416 1 176754412 to 176754423 11 - TSS region transcription start site region 15416
Gm36992 1 176754517 to 176758876 4359 + antisense lncRNA gene predicted gene, 36992
Tssr10330 1 176754520 to 176754531 11 + TSS region transcription start site region 10330
Tssr15417 1 176756315 to 176756337 22 - TSS region transcription start site region 15417
Tssr15418 1 176756715 to 176756726 11 - TSS region transcription start site region 15418
Tssr15419 1 176756898 to 176756901 3 - TSS region transcription start site region 15419
Mir350 1 176772325 to 176772423 98 - miRNA gene microRNA 350
Tssr10331 1 176779225 to 176779227 2 + TSS region transcription start site region 10331
Gm25288 1 176793956 to 176794220 264 + unclassified non-coding RNA gene predicted gene, 25288
Tssr15420 1 176797315 to 176797320 5 - TSS region transcription start site region 15420
Tssr15421 1 176808968 to 176808991 23 - TSS region transcription start site region 15421
Cpgi1074 1 176813231 to 176815084 1853 CpG island CpG island 1074
Tssr15422 1 176813920 to 176813931 11 - TSS region transcription start site region 15422
Tssr15423 1 176813943 to 176813960 17 - TSS region transcription start site region 15423
Tssr15424 1 176814014 to 176814025 11 - TSS region transcription start site region 15424
Tssr15425 1 176814041 to 176814064 23 - TSS region transcription start site region 15425
Tssr15426 1 176814070 to 176814133 63 - TSS region transcription start site region 15426
Tssr15427 1 176814166 to 176814189 23 - TSS region transcription start site region 15427
Sdccag8 1 176814660 to 177020437 205777 + protein coding gene serologically defined colon cancer antigen 8
Tssr10332 1 176814852 to 176814910 58 + TSS region transcription start site region 10332
Tssr10333 1 176814911 to 176814922 11 + TSS region transcription start site region 10333
Hmga2-ps1 1 176834624 to 176836133 1509 - pseudogene high mobility group AT-hook 2, pseudogene 1
Cpgi1075 1 176835418 to 176835862 444 CpG island CpG island 1075
Tssr10334 1 176835519 to 176835532 13 + TSS region transcription start site region 10334
Gm38158 1 176835724 to 176836062 338 + pseudogene predicted gene, 38158
Tssr15428 1 176835938 to 176835951 13 - TSS region transcription start site region 15428
Tssr15429 1 176836135 to 176836176 41 - TSS region transcription start site region 15429
Tssr310 1 176837532 to 176837538 6 + TSS region transcription start site region 310
Gm38053 1 176854400 to 176854559 159 - pseudogene predicted gene, 38053
Tssr10335 1 176874399 to 176874410 11 + TSS region transcription start site region 10335
Gm25993 1 176879834 to 176879913 79 + miRNA gene predicted gene, 25993
Gm37246 1 176881571 to 176882405 834 + pseudogene predicted gene, 37246
Gm37490 1 176889507 to 176890230 723 + unclassified gene predicted gene, 37490
Tssr10336 1 176902891 to 176902895 4 + TSS region transcription start site region 10336
Gm15423 1 176927999 to 176932711 4712 - antisense lncRNA gene predicted gene 15423
Gm37519 1 176974236 to 176976445 2209 + unclassified gene predicted gene, 37519
Cpgi1076 1 176993752 to 176993960 208 CpG island CpG island 1076
Tssr10337 1 176996952 to 176996969 17 + TSS region transcription start site region 10337
Tssr10338 1 176997827 to 176997869 42 + TSS region transcription start site region 10338
Cpgi1077 1 176997930 to 176998315 385 CpG island CpG island 1077
Akt3 1 177020073 to 177258203 238130 - protein coding gene thymoma viral proto-oncogene 3
Tssr15430 1 177033706 to 177033709 3 - TSS region transcription start site region 15430
Gm37960 1 177035040 to 177036936 1896 - unclassified gene predicted gene, 37960
Gm37106 1 177045242 to 177046773 1531 - unclassified gene predicted gene, 37106
Tssr15431 1 177050199 to 177050213 14 - TSS region transcription start site region 15431
Tssr15432 1 177064484 to 177064505 21 - TSS region transcription start site region 15432
Tssr15433 1 177071325 to 177071344 19 - TSS region transcription start site region 15433
Gm37598 1 177074484 to 177075784 1300 - unclassified gene predicted gene, 37598
Tssr15434 1 177131067 to 177131078 11 - TSS region transcription start site region 15434
Gm38146 1 177134161 to 177135453 1292 - unclassified gene predicted gene, 38146
Tssr10339 1 177139858 to 177139864 6 + TSS region transcription start site region 10339
Gm37706 1 177168098 to 177170862 2764 - unclassified gene predicted gene, 37706
Tssr15435 1 177193932 to 177193953 21 - TSS region transcription start site region 15435
Tssr15436 1 177203904 to 177203913 9 - TSS region transcription start site region 15436
Tssr15437 1 177207415 to 177207421 6 - TSS region transcription start site region 15437
Gm37463 1 177229891 to 177230686 795 - unclassified gene predicted gene, 37463
Tssr15438 1 177239125 to 177239127 2 - TSS region transcription start site region 15438
Cpgi1078 1 177257149 to 177259217 2068 CpG island CpG island 1078
Tssr10340 1 177257443 to 177257454 11 + TSS region transcription start site region 10340
Gm36904 1 177257681 to 177370748 113067 + lncRNA gene predicted gene, 36904
Tssr15439 1 177258182 to 177258214 32 - TSS region transcription start site region 15439
Tssr15440 1 177258315 to 177258438 123 - TSS region transcription start site region 15440
Tssr10341 1 177258508 to 177258528 20 + TSS region transcription start site region 10341
Tssr10342 1 177258796 to 177258808 12 + TSS region transcription start site region 10342
Tssr15441 1 177258829 to 177258857 28 - TSS region transcription start site region 15441
Tssr311 1 177258949 to 177258958 9 - TSS region transcription start site region 311
Tssr15442 1 177260504 to 177260531 27 - TSS region transcription start site region 15442
Gm38328 1 177269352 to 177269668 316 + pseudogene predicted gene, 38328
Tgl5 1 177269591 to 177269591 0 QTL triglyceride 5
Phdlc5 1 177269591 to 177269591 0 QTL plasma HDL cholesterol 5
Ath9 1 177285202 to 177285317 115 QTL atherosclerosis 9
D1Mit359 1 177285202 to 177285317 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 359
Cpgi1079 1 177322728 to 177323246 518 CpG island CpG island 1079
Cpgi1080 1 177338834 to 177339214 380 CpG island CpG island 1080
Gm26801 1 177428338 to 177443270 14932 - antisense lncRNA gene predicted gene, 26801
Cpgi1081 1 177441420 to 177443545 2125 CpG island CpG island 1081
Tssr10343 1 177442280 to 177442378 98 + TSS region transcription start site region 10343
Zbtb18 1 177442356 to 177450764 8408 + protein coding gene zinc finger and BTB domain containing 18
Tssr10344 1 177442383 to 177442394 11 + TSS region transcription start site region 10344
Tssr10345 1 177442412 to 177442426 14 + TSS region transcription start site region 10345
Tssr10346 1 177442494 to 177442523 29 + TSS region transcription start site region 10346
Tssr10347 1 177442535 to 177442547 12 + TSS region transcription start site region 10347
Tssr15443 1 177443081 to 177443085 4 - TSS region transcription start site region 15443
Tssr10348 1 177444633 to 177444645 12 + TSS region transcription start site region 10348
Tssr10349 1 177444653 to 177444669 16 + TSS region transcription start site region 10349
Tssr10350 1 177444689 to 177444700 11 + TSS region transcription start site region 10350
Tssr10351 1 177444731 to 177444742 11 + TSS region transcription start site region 10351
Tssr10352 1 177445660 to 177445672 12 + TSS region transcription start site region 10352
Tssr10353 1 177447115 to 177447135 20 + TSS region transcription start site region 10353
Tssr10354 1 177447147 to 177447156 9 + TSS region transcription start site region 10354
Tssr312 1 177447159 to 177447178 19 + TSS region transcription start site region 312
Tssr10355 1 177447189 to 177447200 11 + TSS region transcription start site region 10355
Tssr10356 1 177447277 to 177447291 14 + TSS region transcription start site region 10356
Tssr10357 1 177447353 to 177447375 22 + TSS region transcription start site region 10357
Tssr10358 1 177447447 to 177447458 11 + TSS region transcription start site region 10358
Tssr10359 1 177447464 to 177447473 9 + TSS region transcription start site region 10359
Tssr313 1 177447850 to 177447862 12 + TSS region transcription start site region 313
Cpgi1082 1 177448070 to 177448550 480 CpG island CpG island 1082
Tssr10360 1 177448199 to 177448210 11 + TSS region transcription start site region 10360
Tssr10361 1 177448243 to 177448251 8 + TSS region transcription start site region 10361
Gm29856 1 177458966 to 177461204 2238 + lncRNA gene predicted gene, 29856
Tssr15444 1 177463028 to 177463030 2 - TSS region transcription start site region 15444
Tssr10362 1 177467284 to 177467308 24 + TSS region transcription start site region 10362
Gm37306 1 177467378 to 177476267 8889 + lincRNA gene predicted gene, 37306
Cpgi1083 1 177499085 to 177499370 285 CpG island CpG island 1083
Gm7064 1 177527490 to 177528707 1217 - pseudogene predicted gene 7064
D1Mit207 1 177530541 to 177530655 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 207
D1Mit358 1 177549906 to 177550021 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 358
Gm30013 1 177556464 to 177586221 29757 + lncRNA gene predicted gene, 30013
D1Mit404 1 177561852 to 177561968 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 404
Gm37280 1 177589021 to 177594522 5501 - lincRNA gene predicted gene, 37280
Gm37858 1 177635707 to 177636937 1230 - unclassified gene predicted gene, 37858
2310043L19Rik 1 177641542 to 177642943 1401 - lincRNA gene RIKEN cDNA 2310043L19 gene
Tssr15445 1 177642866 to 177642926 60 - TSS region transcription start site region 15445
Tssr15446 1 177643132 to 177643148 16 - TSS region transcription start site region 15446
D1Mit115 1 177680074 to 177680220 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 115
D1Mit165 1 177706183 to 177706329 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 165
Gm30115 1 177706710 to 177729769 23059 - lncRNA gene predicted gene, 30115
Tssr10363 1 177711245 to 177711251 6 + TSS region transcription start site region 10363
1700016C15Rik 1 177729814 to 177753324 23510 + protein coding gene RIKEN cDNA 1700016C15 gene
Tssr314 1 177729838 to 177729839 1 + TSS region transcription start site region 314
Tssr10364 1 177729843 to 177729869 26 + TSS region transcription start site region 10364
Tssr10365 1 177729880 to 177729893 13 + TSS region transcription start site region 10365
Tssr10366 1 177740831 to 177740855 24 + TSS region transcription start site region 10366