Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:174982879-176292895

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eila1 1 112081092 to 175641372 63560280 QTL ethanol induced locomotor activity 1
Ctex 1 153681660 to 175641372 21959712 QTL Ctla4 expression QTL
Qrr1 1 171051174 to 175492500 4441326 QTL QTL rich region on chromosome 1
Tssr10312 1 175036370 to 175036375 5 + TSS region transcription start site region 10312
Rgs7 1 175059087 to 175492500 433413 - protein coding gene regulator of G protein signaling 7
6330418B08Rik 1 175061956 to 175064910 2954 unclassified gene RIKEN cDNA 6330418B08 gene
Tssr309 1 175105055 to 175105056 1 + TSS region transcription start site region 309
5730408A14Rik 1 175378853 to 175380676 1823 - unclassified gene RIKEN cDNA 5730408A14 gene
Tssr15390 1 175453991 to 175453996 5 - TSS region transcription start site region 15390
Tssr15391 1 175479410 to 175479424 14 - TSS region transcription start site region 15391
Tssr15392 1 175479539 to 175479545 6 - TSS region transcription start site region 15392
Cpgi1067 1 175491656 to 175492893 1237 CpG island CpG island 1067
Tssr15393 1 175492484 to 175492538 54 - TSS region transcription start site region 15393
Tssr15394 1 175492539 to 175492556 17 - TSS region transcription start site region 15394
D1Mit357 1 175530703 to 175530826 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 357
Gm36307 1 175574309 to 175578425 4116 + lincRNA gene predicted gene, 36307
Fh1 1 175601378 to 175625635 24257 - protein coding gene fumarate hydratase 1
Tssr15395 1 175607983 to 175607993 10 - TSS region transcription start site region 15395
Tssr15396 1 175615840 to 175615856 16 - TSS region transcription start site region 15396
Cpgi1068 1 175624979 to 175625877 898 CpG island CpG island 1068
Tssr15397 1 175625552 to 175625576 24 - TSS region transcription start site region 15397
Tssr15398 1 175625580 to 175625613 33 - TSS region transcription start site region 15398
Tssr15399 1 175625618 to 175625628 10 - TSS region transcription start site region 15399
Tssr10313 1 175631968 to 175631978 10 + TSS region transcription start site region 10313
Tssr10314 1 175631996 to 175632001 5 + TSS region transcription start site region 10314
Tssr10315 1 175632015 to 175632024 9 + TSS region transcription start site region 10315
Tssr10316 1 175632044 to 175632057 13 + TSS region transcription start site region 10316
Tssr10317 1 175632064 to 175632094 30 + TSS region transcription start site region 10317
Tssr10318 1 175632096 to 175632101 5 + TSS region transcription start site region 10318
Tssr10319 1 175632104 to 175632111 7 + TSS region transcription start site region 10319
Tssr10320 1 175632120 to 175632133 13 + TSS region transcription start site region 10320
Tssr10321 1 175632141 to 175632151 10 + TSS region transcription start site region 10321
Tssr10322 1 175632155 to 175632160 5 + TSS region transcription start site region 10322
Tssr10323 1 175632169 to 175632185 16 + TSS region transcription start site region 10323
Kmo 1 175632193 to 175660853 28660 + protein coding gene kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
Tssr10324 1 175637879 to 175637895 16 + TSS region transcription start site region 10324
Sle9 1 175641251 to 175641372 121 QTL systematic lupus erythematosus susceptibility 9
Yaa4 1 175641251 to 175641372 121 QTL Y-linked autoimmune acceleration QTL 4
D1Mit403 1 175641251 to 175641372 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 403
Sluc37 1 175641251 to 194429220 18787969 QTL susceptibility to lung cancer 37
Lmr20a 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20a
Lmr20b 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20b
Lmr20c 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20c
Hpic2 1 175641251 to 181573094 5931843 QTL haloperidol induced catalepsy 2
Lmr20 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20
Opn3 1 175662421 to 175692776 30355 - protein coding gene opsin 3
Chml 1 175682237 to 175688353 6116 - protein coding gene choroideremia-like
Cpgi1069 1 175691914 to 175693122 1208 CpG island CpG island 1069
Tssr15400 1 175692590 to 175692615 25 - TSS region transcription start site region 15400
Tssr15401 1 175692624 to 175692663 39 - TSS region transcription start site region 15401
Gm39707 1 175693046 to 175696660 3614 + lncRNA gene predicted gene, 39707
D1Mit271 1 175698343 to 175698473 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 271
Tssr10325 1 175698552 to 175698560 8 + TSS region transcription start site region 10325
Tssr10326 1 175698586 to 175698600 14 + TSS region transcription start site region 10326
Wdr64 1 175698593 to 175815734 117141 + protein coding gene WD repeat domain 64
Tssr10327 1 175767010 to 175767055 45 + TSS region transcription start site region 10327
Tssr10328 1 175767064 to 175767073 9 + TSS region transcription start site region 10328
Gm25560 1 175800514 to 175800689 175 + snRNA gene predicted gene, 25560
Brwt7 1 175833101 to 175833101 0 QTL brain weight 7
Gm36360 1 175871618 to 175880755 9137 - lncRNA gene predicted gene, 36360
Cpgi1070 1 175880440 to 175881306 866 CpG island CpG island 1070
Exo1 1 175880760 to 175911396 30636 + protein coding gene exonuclease 1
Tssr10329 1 175880775 to 175880808 33 + TSS region transcription start site region 10329
Gm23805 1 175904545 to 175904651 106 + snRNA gene predicted gene, 23805
C130098C10Rik 1 175912387 to 175913488 1101 unclassified gene RIKEN cDNA C130098C10 gene
Becn2 1 175920329 to 175922225 1896 + protein coding gene beclin 2
Gm38100 1 175920329 to 175922225 1896 + protein coding gene predicted gene, 38100
Gm37668 1 175955455 to 175957398 1943 - unclassified gene predicted gene, 37668
Pld5 1 175962306 to 176275312 313006 - protein coding gene phospholipase D family, member 5
Rbm8a2 1 175978218 to 175978943 725 - protein coding gene RNA binding motif protein 8A2
Gm38081 1 176031079 to 176032723 1644 - unclassified gene predicted gene, 38081
Gm37916 1 176179201 to 176181635 2434 + unclassified gene predicted gene, 37916
Gm46173 1 176207055 to 176213620 6565 + lncRNA gene predicted gene, 46173
Tssr15402 1 176213673 to 176213684 11 - TSS region transcription start site region 15402
Tssr15403 1 176213704 to 176213718 14 - TSS region transcription start site region 15403
Tssr15404 1 176213740 to 176213747 7 - TSS region transcription start site region 15404
Tssr15405 1 176213769 to 176213779 10 - TSS region transcription start site region 15405
Tssr15406 1 176213934 to 176213943 9 - TSS region transcription start site region 15406
Tssr15407 1 176213958 to 176213967 9 - TSS region transcription start site region 15407
Tssr15408 1 176213974 to 176213977 3 - TSS region transcription start site region 15408
Tssr15409 1 176214015 to 176214024 9 - TSS region transcription start site region 15409
Tssr15410 1 176214041 to 176214047 6 - TSS region transcription start site region 15410
Cpgi1071 1 176223320 to 176223481 161 CpG island CpG island 1071
Cpgi1072 1 176274583 to 176275797 1214 CpG island CpG island 1072
Tssr15411 1 176275283 to 176275308 25 - TSS region transcription start site region 15411
Gm38101 1 176276213 to 176279769 3556 + lincRNA gene predicted gene, 38101