Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:174861618-176890755

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eila1 1 112081092 to 175641372 63560280 QTL ethanol induced locomotor activity 1
Ctex 1 153681660 to 175641372 21959712 QTL Ctla4 expression QTL
Scgq1 1 156774467 to 176435127 19660660 QTL spontaneous crescentic glomerulonephritis QTL 1
Qrr1 1 171051174 to 175492500 4441326 QTL QTL rich region on chromosome 1
Grem2 1 174833785 to 174921819 88034 - protein coding gene gremlin 2, DAN family BMP antagonist
Cpgi1066 1 174921433 to 174921913 480 CpG island CpG island 1066
Tssr15384 1 174921696 to 174921707 11 - TSS region transcription start site region 15384
Tssr15385 1 174921721 to 174921724 3 - TSS region transcription start site region 15385
Tssr15386 1 174921747 to 174921756 9 - TSS region transcription start site region 15386
Tssr15387 1 174921764 to 174921771 7 - TSS region transcription start site region 15387
Tssr15388 1 174921791 to 174921803 12 - TSS region transcription start site region 15388
Tssr15389 1 174921813 to 174921827 14 - TSS region transcription start site region 15389
D1Mit457 1 174951457 to 174951568 111 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 457
Mdq7 1 174976036 to 174976036 0 QTL mammary ductal QTL 7
Tssr10312 1 175036370 to 175036375 5 + TSS region transcription start site region 10312
Rgs7 1 175059087 to 175492500 433413 - protein coding gene regulator of G protein signaling 7
6330418B08Rik 1 175061956 to 175064910 2954 unclassified gene RIKEN cDNA 6330418B08 gene
Tssr309 1 175105055 to 175105056 1 + TSS region transcription start site region 309
5730408A14Rik 1 175378853 to 175380676 1823 - unclassified gene RIKEN cDNA 5730408A14 gene
Tssr15390 1 175453991 to 175453996 5 - TSS region transcription start site region 15390
Tssr15391 1 175479410 to 175479424 14 - TSS region transcription start site region 15391
Tssr15392 1 175479539 to 175479545 6 - TSS region transcription start site region 15392
Cpgi1067 1 175491656 to 175492893 1237 CpG island CpG island 1067
Tssr15393 1 175492484 to 175492538 54 - TSS region transcription start site region 15393
Tssr15394 1 175492539 to 175492556 17 - TSS region transcription start site region 15394
D1Mit357 1 175530703 to 175530826 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 357
Gm36307 1 175574309 to 175578425 4116 + lincRNA gene predicted gene, 36307
Fh1 1 175601378 to 175625635 24257 - protein coding gene fumarate hydratase 1
Tssr15395 1 175607983 to 175607993 10 - TSS region transcription start site region 15395
Tssr15396 1 175615840 to 175615856 16 - TSS region transcription start site region 15396
Cpgi1068 1 175624979 to 175625877 898 CpG island CpG island 1068
Tssr15397 1 175625552 to 175625576 24 - TSS region transcription start site region 15397
Tssr15398 1 175625580 to 175625613 33 - TSS region transcription start site region 15398
Tssr15399 1 175625618 to 175625628 10 - TSS region transcription start site region 15399
Tssr10313 1 175631968 to 175631978 10 + TSS region transcription start site region 10313
Tssr10314 1 175631996 to 175632001 5 + TSS region transcription start site region 10314
Tssr10315 1 175632015 to 175632024 9 + TSS region transcription start site region 10315
Tssr10316 1 175632044 to 175632057 13 + TSS region transcription start site region 10316
Tssr10317 1 175632064 to 175632094 30 + TSS region transcription start site region 10317
Tssr10318 1 175632096 to 175632101 5 + TSS region transcription start site region 10318
Tssr10319 1 175632104 to 175632111 7 + TSS region transcription start site region 10319
Tssr10320 1 175632120 to 175632133 13 + TSS region transcription start site region 10320
Tssr10321 1 175632141 to 175632151 10 + TSS region transcription start site region 10321
Tssr10322 1 175632155 to 175632160 5 + TSS region transcription start site region 10322
Tssr10323 1 175632169 to 175632185 16 + TSS region transcription start site region 10323
Kmo 1 175632193 to 175660853 28660 + protein coding gene kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
Tssr10324 1 175637879 to 175637895 16 + TSS region transcription start site region 10324
Sle9 1 175641251 to 175641372 121 QTL systematic lupus erythematosus susceptibility 9
Hpic2 1 175641251 to 181573094 5931843 QTL haloperidol induced catalepsy 2
Lmr20c 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20c
D1Mit403 1 175641251 to 175641372 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 403
Sluc37 1 175641251 to 194429220 18787969 QTL susceptibility to lung cancer 37
Lmr20 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20
Lmr20a 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20a
Lmr20b 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20b
Yaa4 1 175641251 to 175641372 121 QTL Y-linked autoimmune acceleration QTL 4
Opn3 1 175662421 to 175692776 30355 - protein coding gene opsin 3
Chml 1 175682237 to 175688353 6116 - protein coding gene choroideremia-like
Cpgi1069 1 175691914 to 175693122 1208 CpG island CpG island 1069
Tssr15400 1 175692590 to 175692615 25 - TSS region transcription start site region 15400
Tssr15401 1 175692624 to 175692663 39 - TSS region transcription start site region 15401
Gm39707 1 175693046 to 175696660 3614 + lncRNA gene predicted gene, 39707
D1Mit271 1 175698343 to 175698473 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 271
Tssr10325 1 175698552 to 175698560 8 + TSS region transcription start site region 10325
Tssr10326 1 175698586 to 175698600 14 + TSS region transcription start site region 10326
Wdr64 1 175698593 to 175815734 117141 + protein coding gene WD repeat domain 64
Tssr10327 1 175767010 to 175767055 45 + TSS region transcription start site region 10327
Tssr10328 1 175767064 to 175767073 9 + TSS region transcription start site region 10328
Gm25560 1 175800514 to 175800689 175 + snRNA gene predicted gene, 25560
Brwt7 1 175833101 to 175833101 0 QTL brain weight 7
Gm36360 1 175871618 to 175880755 9137 - lncRNA gene predicted gene, 36360
Cpgi1070 1 175880440 to 175881306 866 CpG island CpG island 1070
Exo1 1 175880760 to 175911396 30636 + protein coding gene exonuclease 1
Tssr10329 1 175880775 to 175880808 33 + TSS region transcription start site region 10329
Gm23805 1 175904545 to 175904651 106 + snRNA gene predicted gene, 23805
C130098C10Rik 1 175912387 to 175913488 1101 unclassified gene RIKEN cDNA C130098C10 gene
Becn2 1 175920329 to 175922225 1896 + protein coding gene beclin 2
Gm38100 1 175920329 to 175922225 1896 + protein coding gene predicted gene, 38100
Gm37668 1 175955455 to 175957398 1943 - unclassified gene predicted gene, 37668
Pld5 1 175962306 to 176275312 313006 - protein coding gene phospholipase D family, member 5
Rbm8a2 1 175978218 to 175978943 725 - protein coding gene RNA binding motif protein 8A2
Gm38081 1 176031079 to 176032723 1644 - unclassified gene predicted gene, 38081
Gm37916 1 176179201 to 176181635 2434 + unclassified gene predicted gene, 37916
Gm46173 1 176207055 to 176213620 6565 + lncRNA gene predicted gene, 46173
Tssr15402 1 176213673 to 176213684 11 - TSS region transcription start site region 15402
Tssr15403 1 176213704 to 176213718 14 - TSS region transcription start site region 15403
Tssr15404 1 176213740 to 176213747 7 - TSS region transcription start site region 15404
Tssr15405 1 176213769 to 176213779 10 - TSS region transcription start site region 15405
Tssr15406 1 176213934 to 176213943 9 - TSS region transcription start site region 15406
Tssr15407 1 176213958 to 176213967 9 - TSS region transcription start site region 15407
Tssr15408 1 176213974 to 176213977 3 - TSS region transcription start site region 15408
Tssr15409 1 176214015 to 176214024 9 - TSS region transcription start site region 15409
Tssr15410 1 176214041 to 176214047 6 - TSS region transcription start site region 15410
Cpgi1071 1 176223320 to 176223481 161 CpG island CpG island 1071
Cpgi1072 1 176274583 to 176275797 1214 CpG island CpG island 1072
Tssr15411 1 176275283 to 176275308 25 - TSS region transcription start site region 15411
Gm38101 1 176276213 to 176279769 3556 + lincRNA gene predicted gene, 38101
Gm17965 1 176339130 to 176339643 513 - pseudogene predicted gene, 17965
Gm38152 1 176370155 to 176373720 3565 - unclassified gene predicted gene, 38152
Gm36536 1 176430111 to 176527269 97158 - lincRNA gene predicted gene, 36536
Pcho1 1 176435007 to 176435127 120 QTL plasma cholesterol 1
D1Mit166 1 176435007 to 176435127 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 166
D1Dcr18 1 176435008 to 176435131 123 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 18
D1Jpk1 1 176593800 to 176593954 154 DNA segment DNA segment, Chr 1, Japan, Kominami 1
Gm36586 1 176597509 to 176614764 17255 - lncRNA gene predicted gene, 36586
Tssr15412 1 176614761 to 176614770 9 - TSS region transcription start site region 15412
Gm17966 1 176642021 to 176642558 537 - pseudogene predicted gene, 17966
Gm26104 1 176700617 to 176700724 107 + snRNA gene predicted gene, 26104
Cpgi1073 1 176725004 to 176725289 285 CpG island CpG island 1073
Cep170 1 176733653 to 176814067 80414 - protein coding gene centrosomal protein 170
Tssr15413 1 176734209 to 176734213 4 - TSS region transcription start site region 15413
Tssr15414 1 176735012 to 176735029 17 - TSS region transcription start site region 15414
3110062G12Rik 1 176745564 to 176746982 1418 - unclassified gene RIKEN cDNA 3110062G12 gene
Gm38104 1 176751521 to 176753415 1894 - unclassified gene predicted gene, 38104
Tssr15415 1 176754377 to 176754407 30 - TSS region transcription start site region 15415
Tssr15416 1 176754412 to 176754423 11 - TSS region transcription start site region 15416
Gm36992 1 176754517 to 176758876 4359 + antisense lncRNA gene predicted gene, 36992
Tssr10330 1 176754520 to 176754531 11 + TSS region transcription start site region 10330
Tssr15417 1 176756315 to 176756337 22 - TSS region transcription start site region 15417
Tssr15418 1 176756715 to 176756726 11 - TSS region transcription start site region 15418
Tssr15419 1 176756898 to 176756901 3 - TSS region transcription start site region 15419
Mir350 1 176772325 to 176772423 98 - miRNA gene microRNA 350
Tssr10331 1 176779225 to 176779227 2 + TSS region transcription start site region 10331
Gm25288 1 176793956 to 176794220 264 + unclassified non-coding RNA gene predicted gene, 25288
Tssr15420 1 176797315 to 176797320 5 - TSS region transcription start site region 15420
Tssr15421 1 176808968 to 176808991 23 - TSS region transcription start site region 15421
Cpgi1074 1 176813231 to 176815084 1853 CpG island CpG island 1074
Tssr15422 1 176813920 to 176813931 11 - TSS region transcription start site region 15422
Tssr15423 1 176813943 to 176813960 17 - TSS region transcription start site region 15423
Tssr15424 1 176814014 to 176814025 11 - TSS region transcription start site region 15424
Tssr15425 1 176814041 to 176814064 23 - TSS region transcription start site region 15425
Tssr15426 1 176814070 to 176814133 63 - TSS region transcription start site region 15426
Tssr15427 1 176814166 to 176814189 23 - TSS region transcription start site region 15427
Sdccag8 1 176814660 to 177020437 205777 + protein coding gene serologically defined colon cancer antigen 8
Tssr10332 1 176814852 to 176814910 58 + TSS region transcription start site region 10332
Tssr10333 1 176814911 to 176814922 11 + TSS region transcription start site region 10333
Hmga2-ps1 1 176834624 to 176836133 1509 - pseudogene high mobility group AT-hook 2, pseudogene 1
Cpgi1075 1 176835418 to 176835862 444 CpG island CpG island 1075
Tssr10334 1 176835519 to 176835532 13 + TSS region transcription start site region 10334
Gm38158 1 176835724 to 176836062 338 + pseudogene predicted gene, 38158
Tssr15428 1 176835938 to 176835951 13 - TSS region transcription start site region 15428
Tssr15429 1 176836135 to 176836176 41 - TSS region transcription start site region 15429
Tssr310 1 176837532 to 176837538 6 + TSS region transcription start site region 310
Gm38053 1 176854400 to 176854559 159 - pseudogene predicted gene, 38053
Tssr10335 1 176874399 to 176874410 11 + TSS region transcription start site region 10335
Gm25993 1 176879834 to 176879913 79 + miRNA gene predicted gene, 25993
Gm37246 1 176881571 to 176882405 834 + pseudogene predicted gene, 37246
Gm37490 1 176889507 to 176890230 723 + unclassified gene predicted gene, 37490