Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:174161457-175741568

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eila1 1 112081092 to 175641372 63560280 QTL ethanol induced locomotor activity 1
Ctex 1 153681660 to 175641372 21959712 QTL Ctla4 expression QTL
Bbaa30 1 169211172 to 174628870 5417698 QTL B.burgdorferi-associated arthritis 30
Qrr1 1 171051174 to 175492500 4441326 QTL QTL rich region on chromosome 1
Szs1 1 171051174 to 174628870 3577696 QTL seizure susceptibility 1
Gm43440 1 174167702 to 174169724 2022 + pseudogene predicted gene 43440
Gm36196 1 174168604 to 174172654 4050 - lncRNA gene predicted gene, 36196
Tssr10301 1 174172738 to 174172782 44 + TSS region transcription start site region 10301
Spta1 1 174172776 to 174248449 75673 + protein coding gene spectrin alpha, erythrocytic 1
Tssr10302 1 174172810 to 174172857 47 + TSS region transcription start site region 10302
Tssr10303 1 174172888 to 174172916 28 + TSS region transcription start site region 10303
Tssr10304 1 174173807 to 174173813 6 + TSS region transcription start site region 10304
Tssr10305 1 174191056 to 174191062 6 + TSS region transcription start site region 10305
Tssr307 1 174191849 to 174191860 11 + TSS region transcription start site region 307
Tssr10306 1 174211654 to 174211658 4 + TSS region transcription start site region 10306
Tssr10307 1 174215425 to 174215434 9 + TSS region transcription start site region 10307
Tssr15383 1 174240189 to 174240192 3 - TSS region transcription start site region 15383
Olfr419 1 174249889 to 174250976 1087 - protein coding gene olfactory receptor 419
D1Sta12 1 174297942 to 174298073 131 DNA segment DNA segment, Chr 1, Philip Stanier 12
Tssr10308 1 174330518 to 174330521 3 + TSS region transcription start site region 10308
Mptx1 1 174330518 to 174332873 2355 + protein coding gene mucosal pentraxin 1
Olfr417 1 174368919 to 174369848 929 + protein coding gene olfactory receptor 417
Olfr416-ps1 1 174374547 to 174375683 1136 + pseudogene olfactory receptor 416, pseudogene 1
Olfr248 1 174391046 to 174392055 1009 + protein coding gene olfactory receptor 248
Olfr414 1 174430430 to 174431384 954 + protein coding gene olfactory receptor 414
D1Sta13 1 174446409 to 174446560 151 DNA segment DNA segment, Chr 1, Philip Stanier 13
Olfr220 1 174448625 to 174449602 977 + protein coding gene olfactory receptor 220
D1Mit541 1 174472116 to 174472238 122 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 541
Tssr308 1 174497762 to 174497770 8 - TSS region transcription start site region 308
Cpgi1064 1 174501672 to 174503663 1991 CpG island CpG island 1064
Tssr10309 1 174501796 to 174501843 47 + TSS region transcription start site region 10309
Fmn2 1 174501825 to 174822729 320904 + protein coding gene formin 2
Tssr10310 1 174501850 to 174501887 37 + TSS region transcription start site region 10310
Gvhd1 1 174628733 to 174628870 137 QTL graft-versus-host disease 1
Bslm4 1 174628733 to 174628870 137 QTL basal locomotor activity 4
Cbm1 1 174628733 to 174628870 137 QTL cerebellum weight 1
Cq2 1 174628733 to 174628870 137 QTL cholesterol QTL 2
D1Mit150 1 174628733 to 174628870 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 150
Mnotch 1 174628733 to 174628870 137 QTL modifier of Notch
Melm2 1 174628733 to 174628870 137 QTL melanoma modifier 2
Fglu2 1 174628733 to 174628870 137 QTL fasting glucose 2
D1Sta14 1 174648173 to 174648252 79 DNA segment DNA segment, Chr 1, Philip Stanier 14
Gm18408 1 174683815 to 174684601 786 + pseudogene predicted gene, 18408
Tssr10311 1 174751646 to 174751651 5 + TSS region transcription start site region 10311
Grem2 1 174833785 to 174921819 88034 - protein coding gene gremlin 2, DAN family BMP antagonist
Cpgi1065 1 174836766 to 174837218 452 CpG island CpG island 1065
Cpgi1066 1 174921433 to 174921913 480 CpG island CpG island 1066
Tssr15384 1 174921696 to 174921707 11 - TSS region transcription start site region 15384
Tssr15385 1 174921721 to 174921724 3 - TSS region transcription start site region 15385
Tssr15386 1 174921747 to 174921756 9 - TSS region transcription start site region 15386
Tssr15387 1 174921764 to 174921771 7 - TSS region transcription start site region 15387
Tssr15388 1 174921791 to 174921803 12 - TSS region transcription start site region 15388
Tssr15389 1 174921813 to 174921827 14 - TSS region transcription start site region 15389
D1Mit457 1 174951457 to 174951568 111 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 457
Mdq7 1 174976036 to 174976036 0 QTL mammary ductal QTL 7
Tssr10312 1 175036370 to 175036375 5 + TSS region transcription start site region 10312
Rgs7 1 175059087 to 175492500 433413 - protein coding gene regulator of G protein signaling 7
6330418B08Rik 1 175061956 to 175064910 2954 unclassified gene RIKEN cDNA 6330418B08 gene
Tssr309 1 175105055 to 175105056 1 + TSS region transcription start site region 309
5730408A14Rik 1 175378853 to 175380676 1823 - unclassified gene RIKEN cDNA 5730408A14 gene
Tssr15390 1 175453991 to 175453996 5 - TSS region transcription start site region 15390
Tssr15391 1 175479410 to 175479424 14 - TSS region transcription start site region 15391
Tssr15392 1 175479539 to 175479545 6 - TSS region transcription start site region 15392
Cpgi1067 1 175491656 to 175492893 1237 CpG island CpG island 1067
Tssr15393 1 175492484 to 175492538 54 - TSS region transcription start site region 15393
Tssr15394 1 175492539 to 175492556 17 - TSS region transcription start site region 15394
D1Mit357 1 175530703 to 175530826 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 357
Gm36307 1 175574309 to 175578425 4116 + lincRNA gene predicted gene, 36307
Fh1 1 175601378 to 175625635 24257 - protein coding gene fumarate hydratase 1
Tssr15395 1 175607983 to 175607993 10 - TSS region transcription start site region 15395
Tssr15396 1 175615840 to 175615856 16 - TSS region transcription start site region 15396
Cpgi1068 1 175624979 to 175625877 898 CpG island CpG island 1068
Tssr15397 1 175625552 to 175625576 24 - TSS region transcription start site region 15397
Tssr15398 1 175625580 to 175625613 33 - TSS region transcription start site region 15398
Tssr15399 1 175625618 to 175625628 10 - TSS region transcription start site region 15399
Tssr10313 1 175631968 to 175631978 10 + TSS region transcription start site region 10313
Tssr10314 1 175631996 to 175632001 5 + TSS region transcription start site region 10314
Tssr10315 1 175632015 to 175632024 9 + TSS region transcription start site region 10315
Tssr10316 1 175632044 to 175632057 13 + TSS region transcription start site region 10316
Tssr10317 1 175632064 to 175632094 30 + TSS region transcription start site region 10317
Tssr10318 1 175632096 to 175632101 5 + TSS region transcription start site region 10318
Tssr10319 1 175632104 to 175632111 7 + TSS region transcription start site region 10319
Tssr10320 1 175632120 to 175632133 13 + TSS region transcription start site region 10320
Tssr10321 1 175632141 to 175632151 10 + TSS region transcription start site region 10321
Tssr10322 1 175632155 to 175632160 5 + TSS region transcription start site region 10322
Tssr10323 1 175632169 to 175632185 16 + TSS region transcription start site region 10323
Kmo 1 175632193 to 175660853 28660 + protein coding gene kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
Tssr10324 1 175637879 to 175637895 16 + TSS region transcription start site region 10324
Sle9 1 175641251 to 175641372 121 QTL systematic lupus erythematosus susceptibility 9
Lmr20b 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20b
Lmr20c 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20c
Lmr20 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20
Lmr20a 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20a
Sluc37 1 175641251 to 194429220 18787969 QTL susceptibility to lung cancer 37
Yaa4 1 175641251 to 175641372 121 QTL Y-linked autoimmune acceleration QTL 4
D1Mit403 1 175641251 to 175641372 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 403
Hpic2 1 175641251 to 181573094 5931843 QTL haloperidol induced catalepsy 2
Opn3 1 175662421 to 175692776 30355 - protein coding gene opsin 3
Chml 1 175682237 to 175688353 6116 - protein coding gene choroideremia-like
Cpgi1069 1 175691914 to 175693122 1208 CpG island CpG island 1069
Tssr15400 1 175692590 to 175692615 25 - TSS region transcription start site region 15400
Tssr15401 1 175692624 to 175692663 39 - TSS region transcription start site region 15401
Gm39707 1 175693046 to 175696660 3614 + lncRNA gene predicted gene, 39707
D1Mit271 1 175698343 to 175698473 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 271
Tssr10325 1 175698552 to 175698560 8 + TSS region transcription start site region 10325
Tssr10326 1 175698586 to 175698600 14 + TSS region transcription start site region 10326
Wdr64 1 175698593 to 175815734 117141 + protein coding gene WD repeat domain 64