Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:173941618-177810755

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357 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eila1 1 112081092 to 175641372 63560280 QTL ethanol induced locomotor activity 1
Ctex 1 153681660 to 175641372 21959712 QTL Ctla4 expression QTL
Scgq1 1 156774467 to 176435127 19660660 QTL spontaneous crescentic glomerulonephritis QTL 1
Bbaa30 1 169211172 to 174628870 5417698 QTL B.burgdorferi-associated arthritis 30
Sle16 1 169211172 to 177550021 8338849 QTL systematic lupus erythematosus susceptibility 16
Qrr1 1 171051174 to 175492500 4441326 QTL QTL rich region on chromosome 1
Szs1 1 171051174 to 174628870 3577696 QTL seizure susceptibility 1
Ifi203 1 173920407 to 173942672 22265 - protein coding gene interferon activated gene 203
Tssr15350 1 173942445 to 173942472 27 - TSS region transcription start site region 15350
Ifi202b 1 173962568 to 173982744 20176 - protein coding gene interferon activated gene 202B
Tssr15351 1 173963904 to 173963924 20 - TSS region transcription start site region 15351
Tssr15352 1 173971344 to 173971357 13 - TSS region transcription start site region 15352
Tssr15353 1 173971707 to 173971731 24 - TSS region transcription start site region 15353
Tssr15354 1 173974853 to 173974930 77 - TSS region transcription start site region 15354
Tssr15355 1 173974964 to 173975039 75 - TSS region transcription start site region 15355
Tssr306 1 173975046 to 173975056 10 - TSS region transcription start site region 306
Tssr15356 1 173975063 to 173975121 58 - TSS region transcription start site region 15356
Tssr15357 1 173976952 to 173976977 25 - TSS region transcription start site region 15357
Tssr15358 1 173977286 to 173977302 16 - TSS region transcription start site region 15358
Tssr15359 1 173977326 to 173977341 15 - TSS region transcription start site region 15359
Tssr15360 1 173979433 to 173979450 17 - TSS region transcription start site region 15360
Tssr15361 1 173979488 to 173979503 15 - TSS region transcription start site region 15361
Tssr15362 1 173979613 to 173979644 31 - TSS region transcription start site region 15362
Tssr15363 1 173979757 to 173979771 14 - TSS region transcription start site region 15363
Tssr15364 1 173979830 to 173979841 11 - TSS region transcription start site region 15364
Tssr15365 1 173979885 to 173979896 11 - TSS region transcription start site region 15365
Tssr15366 1 173979903 to 173979915 12 - TSS region transcription start site region 15366
Tssr15367 1 173979921 to 173979934 13 - TSS region transcription start site region 15367
Tssr15368 1 173980023 to 173980034 11 - TSS region transcription start site region 15368
Tssr15369 1 173982260 to 173982286 26 - TSS region transcription start site region 15369
Tssr15370 1 173982842 to 173982848 6 - TSS region transcription start site region 15370
Gm18445 1 173986926 to 174001972 15046 - pseudogene predicted gene, 18445
Ifi205 1 174011998 to 174031755 19757 - protein coding gene interferon activated gene 205
Tssr15371 1 174024400 to 174024438 38 - TSS region transcription start site region 15371
Tssr15372 1 174027299 to 174027324 25 - TSS region transcription start site region 15372
Tssr15373 1 174028270 to 174028279 9 - TSS region transcription start site region 15373
Tssr15374 1 174028299 to 174028310 11 - TSS region transcription start site region 15374
Tssr15375 1 174028367 to 174028378 11 - TSS region transcription start site region 15375
Tssr15376 1 174028415 to 174028428 13 - TSS region transcription start site region 15376
Tssr15377 1 174028452 to 174028462 10 - TSS region transcription start site region 15377
Tssr15378 1 174028477 to 174028489 12 - TSS region transcription start site region 15378
Tssr15379 1 174031712 to 174031728 16 - TSS region transcription start site region 15379
Tssr15380 1 174031779 to 174031789 10 - TSS region transcription start site region 15380
Tssr15381 1 174031797 to 174031827 30 - TSS region transcription start site region 15381
Tssr15382 1 174031836 to 174031845 9 - TSS region transcription start site region 15382
Tssr10300 1 174041003 to 174041028 25 + TSS region transcription start site region 10300
Olfr433 1 174041933 to 174042936 1003 + protein coding gene olfactory receptor 433
Olfr432 1 174050375 to 174051313 938 + protein coding gene olfactory receptor 432
Olfr431-ps1 1 174051998 to 174052541 543 + pseudogene olfactory receptor 431, pseudogene 1
Olfr430 1 174069300 to 174070253 953 + protein coding gene olfactory receptor 430
Olfr429 1 174089038 to 174089980 942 + protein coding gene olfactory receptor 429
Olfr428-ps1 1 174094970 to 174095361 391 + pseudogene olfactory receptor 428, pseudogene 1
Olfr427 1 174099460 to 174100408 948 + protein coding gene olfactory receptor 427
Gm37417 1 174110980 to 174111343 363 + pseudogene predicted gene, 37417
Olfr231 1 174117091 to 174118014 923 - protein coding gene olfactory receptor 231
Olfr424 1 174136746 to 174137693 947 + protein coding gene olfactory receptor 424
Olfr258-ps1 1 174142190 to 174143081 891 + pseudogene olfactory receptor 258, pseudogene 1
Olfr421-ps1 1 174151481 to 174152530 1049 + polymorphic pseudogene olfactory receptor 421, pseudogene 1
Olfr420 1 174158722 to 174159767 1045 + protein coding gene olfactory receptor 420
Gm43440 1 174167702 to 174169724 2022 + pseudogene predicted gene 43440
Gm36196 1 174168604 to 174172654 4050 - lncRNA gene predicted gene, 36196
Tssr10301 1 174172738 to 174172782 44 + TSS region transcription start site region 10301
Spta1 1 174172776 to 174248449 75673 + protein coding gene spectrin alpha, erythrocytic 1
Tssr10302 1 174172810 to 174172857 47 + TSS region transcription start site region 10302
Tssr10303 1 174172888 to 174172916 28 + TSS region transcription start site region 10303
Tssr10304 1 174173807 to 174173813 6 + TSS region transcription start site region 10304
Tssr10305 1 174191056 to 174191062 6 + TSS region transcription start site region 10305
Tssr307 1 174191849 to 174191860 11 + TSS region transcription start site region 307
Tssr10306 1 174211654 to 174211658 4 + TSS region transcription start site region 10306
Tssr10307 1 174215425 to 174215434 9 + TSS region transcription start site region 10307
Tssr15383 1 174240189 to 174240192 3 - TSS region transcription start site region 15383
Olfr419 1 174249889 to 174250976 1087 - protein coding gene olfactory receptor 419
D1Sta12 1 174297942 to 174298073 131 DNA segment DNA segment, Chr 1, Philip Stanier 12
Tssr10308 1 174330518 to 174330521 3 + TSS region transcription start site region 10308
Mptx1 1 174330518 to 174332873 2355 + protein coding gene mucosal pentraxin 1
Olfr417 1 174368919 to 174369848 929 + protein coding gene olfactory receptor 417
Olfr416-ps1 1 174374547 to 174375683 1136 + pseudogene olfactory receptor 416, pseudogene 1
Olfr248 1 174391046 to 174392055 1009 + protein coding gene olfactory receptor 248
Olfr414 1 174430430 to 174431384 954 + protein coding gene olfactory receptor 414
D1Sta13 1 174446409 to 174446560 151 DNA segment DNA segment, Chr 1, Philip Stanier 13
Olfr220 1 174448625 to 174449602 977 + protein coding gene olfactory receptor 220
D1Mit541 1 174472116 to 174472238 122 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 541
Tssr308 1 174497762 to 174497770 8 - TSS region transcription start site region 308
Cpgi1064 1 174501672 to 174503663 1991 CpG island CpG island 1064
Tssr10309 1 174501796 to 174501843 47 + TSS region transcription start site region 10309
Fmn2 1 174501825 to 174822729 320904 + protein coding gene formin 2
Tssr10310 1 174501850 to 174501887 37 + TSS region transcription start site region 10310
Melm2 1 174628733 to 174628870 137 QTL melanoma modifier 2
Mnotch 1 174628733 to 174628870 137 QTL modifier of Notch
D1Mit150 1 174628733 to 174628870 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 150
Gvhd1 1 174628733 to 174628870 137 QTL graft-versus-host disease 1
Bslm4 1 174628733 to 174628870 137 QTL basal locomotor activity 4
Cbm1 1 174628733 to 174628870 137 QTL cerebellum weight 1
Cq2 1 174628733 to 174628870 137 QTL cholesterol QTL 2
Fglu2 1 174628733 to 174628870 137 QTL fasting glucose 2
D1Sta14 1 174648173 to 174648252 79 DNA segment DNA segment, Chr 1, Philip Stanier 14
Gm18408 1 174683815 to 174684601 786 + pseudogene predicted gene, 18408
Tssr10311 1 174751646 to 174751651 5 + TSS region transcription start site region 10311
Grem2 1 174833785 to 174921819 88034 - protein coding gene gremlin 2, DAN family BMP antagonist
Cpgi1065 1 174836766 to 174837218 452 CpG island CpG island 1065
Cpgi1066 1 174921433 to 174921913 480 CpG island CpG island 1066
Tssr15384 1 174921696 to 174921707 11 - TSS region transcription start site region 15384
Tssr15385 1 174921721 to 174921724 3 - TSS region transcription start site region 15385
Tssr15386 1 174921747 to 174921756 9 - TSS region transcription start site region 15386
Tssr15387 1 174921764 to 174921771 7 - TSS region transcription start site region 15387
Tssr15388 1 174921791 to 174921803 12 - TSS region transcription start site region 15388
Tssr15389 1 174921813 to 174921827 14 - TSS region transcription start site region 15389
D1Mit457 1 174951457 to 174951568 111 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 457
Mdq7 1 174976036 to 174976036 0 QTL mammary ductal QTL 7
Tssr10312 1 175036370 to 175036375 5 + TSS region transcription start site region 10312
Rgs7 1 175059087 to 175492500 433413 - protein coding gene regulator of G protein signaling 7
6330418B08Rik 1 175061956 to 175064910 2954 unclassified gene RIKEN cDNA 6330418B08 gene
Tssr309 1 175105055 to 175105056 1 + TSS region transcription start site region 309
5730408A14Rik 1 175378853 to 175380676 1823 - unclassified gene RIKEN cDNA 5730408A14 gene
Tssr15390 1 175453991 to 175453996 5 - TSS region transcription start site region 15390
Tssr15391 1 175479410 to 175479424 14 - TSS region transcription start site region 15391
Tssr15392 1 175479539 to 175479545 6 - TSS region transcription start site region 15392
Cpgi1067 1 175491656 to 175492893 1237 CpG island CpG island 1067
Tssr15393 1 175492484 to 175492538 54 - TSS region transcription start site region 15393
Tssr15394 1 175492539 to 175492556 17 - TSS region transcription start site region 15394
D1Mit357 1 175530703 to 175530826 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 357
Gm36307 1 175574309 to 175578425 4116 + lincRNA gene predicted gene, 36307
Fh1 1 175601378 to 175625635 24257 - protein coding gene fumarate hydratase 1
Tssr15395 1 175607983 to 175607993 10 - TSS region transcription start site region 15395
Tssr15396 1 175615840 to 175615856 16 - TSS region transcription start site region 15396
Cpgi1068 1 175624979 to 175625877 898 CpG island CpG island 1068
Tssr15397 1 175625552 to 175625576 24 - TSS region transcription start site region 15397
Tssr15398 1 175625580 to 175625613 33 - TSS region transcription start site region 15398
Tssr15399 1 175625618 to 175625628 10 - TSS region transcription start site region 15399
Tssr10313 1 175631968 to 175631978 10 + TSS region transcription start site region 10313
Tssr10314 1 175631996 to 175632001 5 + TSS region transcription start site region 10314
Tssr10315 1 175632015 to 175632024 9 + TSS region transcription start site region 10315
Tssr10316 1 175632044 to 175632057 13 + TSS region transcription start site region 10316
Tssr10317 1 175632064 to 175632094 30 + TSS region transcription start site region 10317
Tssr10318 1 175632096 to 175632101 5 + TSS region transcription start site region 10318
Tssr10319 1 175632104 to 175632111 7 + TSS region transcription start site region 10319
Tssr10320 1 175632120 to 175632133 13 + TSS region transcription start site region 10320
Tssr10321 1 175632141 to 175632151 10 + TSS region transcription start site region 10321
Tssr10322 1 175632155 to 175632160 5 + TSS region transcription start site region 10322
Tssr10323 1 175632169 to 175632185 16 + TSS region transcription start site region 10323
Kmo 1 175632193 to 175660853 28660 + protein coding gene kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
Tssr10324 1 175637879 to 175637895 16 + TSS region transcription start site region 10324
Yaa4 1 175641251 to 175641372 121 QTL Y-linked autoimmune acceleration QTL 4
Sle9 1 175641251 to 175641372 121 QTL systematic lupus erythematosus susceptibility 9
D1Mit403 1 175641251 to 175641372 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 403
Sluc37 1 175641251 to 194429220 18787969 QTL susceptibility to lung cancer 37
Hpic2 1 175641251 to 181573094 5931843 QTL haloperidol induced catalepsy 2
Lmr20b 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20b
Lmr20c 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20c
Lmr20a 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20a
Lmr20 1 175641251 to 175641372 121 QTL leishmaniasis resistance 20
Opn3 1 175662421 to 175692776 30355 - protein coding gene opsin 3
Chml 1 175682237 to 175688353 6116 - protein coding gene choroideremia-like
Cpgi1069 1 175691914 to 175693122 1208 CpG island CpG island 1069
Tssr15400 1 175692590 to 175692615 25 - TSS region transcription start site region 15400
Tssr15401 1 175692624 to 175692663 39 - TSS region transcription start site region 15401
Gm39707 1 175693046 to 175696660 3614 + lncRNA gene predicted gene, 39707
D1Mit271 1 175698343 to 175698473 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 271
Tssr10325 1 175698552 to 175698560 8 + TSS region transcription start site region 10325
Tssr10326 1 175698586 to 175698600 14 + TSS region transcription start site region 10326
Wdr64 1 175698593 to 175815734 117141 + protein coding gene WD repeat domain 64
Tssr10327 1 175767010 to 175767055 45 + TSS region transcription start site region 10327
Tssr10328 1 175767064 to 175767073 9 + TSS region transcription start site region 10328
Gm25560 1 175800514 to 175800689 175 + snRNA gene predicted gene, 25560
Brwt7 1 175833101 to 175833101 0 QTL brain weight 7
Gm36360 1 175871618 to 175880755 9137 - lncRNA gene predicted gene, 36360
Cpgi1070 1 175880440 to 175881306 866 CpG island CpG island 1070
Exo1 1 175880760 to 175911396 30636 + protein coding gene exonuclease 1
Tssr10329 1 175880775 to 175880808 33 + TSS region transcription start site region 10329
Gm23805 1 175904545 to 175904651 106 + snRNA gene predicted gene, 23805
C130098C10Rik 1 175912387 to 175913488 1101 unclassified gene RIKEN cDNA C130098C10 gene
Becn2 1 175920329 to 175922225 1896 + protein coding gene beclin 2
Gm38100 1 175920329 to 175922225 1896 + protein coding gene predicted gene, 38100
Gm37668 1 175955455 to 175957398 1943 - unclassified gene predicted gene, 37668
Pld5 1 175962306 to 176275312 313006 - protein coding gene phospholipase D family, member 5
Rbm8a2 1 175978218 to 175978943 725 - protein coding gene RNA binding motif protein 8A2
Gm38081 1 176031079 to 176032723 1644 - unclassified gene predicted gene, 38081
Gm37916 1 176179201 to 176181635 2434 + unclassified gene predicted gene, 37916
Gm46173 1 176207055 to 176213620 6565 + lncRNA gene predicted gene, 46173
Tssr15402 1 176213673 to 176213684 11 - TSS region transcription start site region 15402
Tssr15403 1 176213704 to 176213718 14 - TSS region transcription start site region 15403
Tssr15404 1 176213740 to 176213747 7 - TSS region transcription start site region 15404
Tssr15405 1 176213769 to 176213779 10 - TSS region transcription start site region 15405
Tssr15406 1 176213934 to 176213943 9 - TSS region transcription start site region 15406
Tssr15407 1 176213958 to 176213967 9 - TSS region transcription start site region 15407
Tssr15408 1 176213974 to 176213977 3 - TSS region transcription start site region 15408
Tssr15409 1 176214015 to 176214024 9 - TSS region transcription start site region 15409
Tssr15410 1 176214041 to 176214047 6 - TSS region transcription start site region 15410
Cpgi1071 1 176223320 to 176223481 161 CpG island CpG island 1071
Cpgi1072 1 176274583 to 176275797 1214 CpG island CpG island 1072
Tssr15411 1 176275283 to 176275308 25 - TSS region transcription start site region 15411
Gm38101 1 176276213 to 176279769 3556 + lincRNA gene predicted gene, 38101
Gm17965 1 176339130 to 176339643 513 - pseudogene predicted gene, 17965
Gm38152 1 176370155 to 176373720 3565 - unclassified gene predicted gene, 38152
Gm36536 1 176430111 to 176527269 97158 - lincRNA gene predicted gene, 36536
D1Mit166 1 176435007 to 176435127 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 166
Pcho1 1 176435007 to 176435127 120 QTL plasma cholesterol 1
D1Dcr18 1 176435008 to 176435131 123 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 18
D1Jpk1 1 176593800 to 176593954 154 DNA segment DNA segment, Chr 1, Japan, Kominami 1
Gm36586 1 176597509 to 176614764 17255 - lncRNA gene predicted gene, 36586