Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:173033459-173633471

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmd1b 1 172699229 to 173405420 706191 QTL bone mineral density 1b
D1Sta4 1 173033873 to 173034021 148 DNA segment DNA segment, Chr 1, Philip Stanier 4
Gm42472 1 173052832 to 173053690 858 - pseudogene predicted gene 42472
Gm42475 1 173076976 to 173077270 294 + pseudogene predicted gene 42475
Olfr1409-ps1 1 173097997 to 173098248 251 - pseudogene olfactory receptor 1409, pseudogene 1
Olfr1408 1 173130283 to 173131215 932 - protein coding gene olfactory receptor 1408
Olfr1407-ps1 1 173149171 to 173150354 1183 + pseudogene olfactory receptor 1407, pseudogene 1
Olfr1406 1 173183442 to 173184504 1062 - protein coding gene olfactory receptor 1406
Olfr218 1 173203358 to 173204299 941 + protein coding gene olfactory receptor 218
Olfr1404 1 173215607 to 173216640 1033 + protein coding gene olfactory receptor 1404
Fcer1a 1 173221284 to 173227214 5930 - protein coding gene Fc receptor, IgE, high affinity I, alpha polypeptide
Tssr15258 1 173227193 to 173227247 54 - TSS region transcription start site region 15258
Olfr418 1 173270147 to 173271137 990 + protein coding gene olfactory receptor 418
Mptx2 1 173274461 to 173277756 3295 - protein coding gene mucosal pentraxin 2
Ackr1 1 173331886 to 173333503 1617 - protein coding gene atypical chemokine receptor 1 (Duffy blood group)
Tssr15259 1 173333370 to 173333383 13 - TSS region transcription start site region 15259
Tssr15260 1 173333410 to 173333422 12 - TSS region transcription start site region 15260
Tssr15261 1 173333459 to 173333471 12 - TSS region transcription start site region 15261
Tssr15262 1 173333474 to 173333488 14 - TSS region transcription start site region 15262
Tssr15263 1 173333504 to 173333520 16 - TSS region transcription start site region 15263
Tssr10258 1 173333556 to 173333580 24 + TSS region transcription start site region 10258
Tssr15264 1 173334022 to 173334033 11 - TSS region transcription start site region 15264
Cadm3 1 173334254 to 173367695 33441 - protein coding gene cell adhesion molecule 3
Tssr15265 1 173334528 to 173334531 3 - TSS region transcription start site region 15265
Tssr15266 1 173334917 to 173334938 21 - TSS region transcription start site region 15266
Tssr15267 1 173335319 to 173335348 29 - TSS region transcription start site region 15267
Tssr15268 1 173336039 to 173336048 9 - TSS region transcription start site region 15268
Tssr15269 1 173336810 to 173336820 10 - TSS region transcription start site region 15269
Tssr15270 1 173345803 to 173345810 7 - TSS region transcription start site region 15270
Tssr10259 1 173350129 to 173350137 8 + TSS region transcription start site region 10259
Tssr10260 1 173350151 to 173350177 26 + TSS region transcription start site region 10260
Tssr10261 1 173350179 to 173350206 27 + TSS region transcription start site region 10261
Aim2 1 173350879 to 173466040 115161 + protein coding gene absent in melanoma 2
Cpgi1062 1 173366872 to 173368001 1129 CpG island CpG island 1062
Tssr15271 1 173367483 to 173367486 3 - TSS region transcription start site region 15271
Tssr15272 1 173367638 to 173367656 18 - TSS region transcription start site region 15272
Tssr15273 1 173367666 to 173367692 26 - TSS region transcription start site region 15273
Tssr15274 1 173367855 to 173367886 31 - TSS region transcription start site region 15274
Bmd5a 1 173368361 to 173508588 140227 QTL bone mineral density 5a
D1Mit522 1 173382162 to 173382478 316 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-522
n-TRtct5 1 173390329 to 173390402 73 + tRNA gene nuclear encoded tRNA arginine 5 (anticodon TCT)
D1Mit355 1 173405312 to 173405420 108 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 355
D1Mit355.2 1 173405417 to 173405540 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 355.2
Tssr10262 1 173419174 to 173419213 39 + TSS region transcription start site region 10262
Tssr10263 1 173419220 to 173419231 11 + TSS region transcription start site region 10263
Tssr10264 1 173419260 to 173419288 28 + TSS region transcription start site region 10264
Tssr10265 1 173419293 to 173419344 51 + TSS region transcription start site region 10265
Tssr10266 1 173419347 to 173419375 28 + TSS region transcription start site region 10266
Tssr10267 1 173419384 to 173419398 14 + TSS region transcription start site region 10267
Tssr10268 1 173419419 to 173419426 7 + TSS region transcription start site region 10268
Tssr10269 1 173420556 to 173420564 8 + TSS region transcription start site region 10269
Tssr10270 1 173420567 to 173420622 55 + TSS region transcription start site region 10270
Tssr10271 1 173420628 to 173420639 11 + TSS region transcription start site region 10271
Tssr10272 1 173427609 to 173427613 4 + TSS region transcription start site region 10272
Tssr10273 1 173436014 to 173436023 9 + TSS region transcription start site region 10273
Tssr10274 1 173436101 to 173436116 15 + TSS region transcription start site region 10274
Tssr15275 1 173437212 to 173437236 24 - TSS region transcription start site region 15275
Tssr15276 1 173437241 to 173437249 8 - TSS region transcription start site region 15276
Tssr10275 1 173440718 to 173440729 11 + TSS region transcription start site region 10275
Tssr10276 1 173444563 to 173444599 36 + TSS region transcription start site region 10276
D1Sta6 1 173451821 to 173451885 64 DNA segment DNA segment, Chr 1, Philip Stanier 6
Ifi206 1 173468485 to 173491041 22556 - protein coding gene interferon activated gene 206
Tssr15277 1 173490933 to 173490940 7 - TSS region transcription start site region 15277
Ifi214 1 173521311 to 173535957 14646 - protein coding gene interferon activated gene 214
Gm44481 1 173524086 to 173524169 83 + miRNA gene predicted gene, 44481
Tssr15278 1 173526230 to 173526241 11 - TSS region transcription start site region 15278
Tssr15279 1 173535985 to 173536030 45 - TSS region transcription start site region 15279
Ifi213 1 173566595 to 173599302 32707 - protein coding gene interferon activated gene 213
Tssr15280 1 173599243 to 173599277 34 - TSS region transcription start site region 15280
Tssr10277 1 173630813 to 173630834 21 + TSS region transcription start site region 10277
Tssr10278 1 173630847 to 173630882 35 + TSS region transcription start site region 10278
Tssr10279 1 173630894 to 173630897 3 + TSS region transcription start site region 10279
Ifi209 1 173630917 to 173647928 17011 + protein coding gene interferon activated gene 209
Tssr10280 1 173631005 to 173631018 13 + TSS region transcription start site region 10280
Tssr10281 1 173631027 to 173631068 41 + TSS region transcription start site region 10281
Tssr10282 1 173631070 to 173631080 10 + TSS region transcription start site region 10282
Tssr10283 1 173631107 to 173631126 19 + TSS region transcription start site region 10283