Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:172881976-173272270

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emrq1 1 171804480 to 172888802 1084322 QTL emotional reactivity QTL 1
Ssta2 1 172888654 to 172888802 148 QTL susceptibility to Salmonella typhimurium antigens 2
Tir8 1 172888654 to 172888802 148 QTL trypanosome infection response 8
Cafq1 1 172888654 to 172888802 148 QTL caffeine metabolism QTL 1
D1Mit356 1 172888654 to 172888802 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 356
Apcs 1 172893961 to 172895041 1080 - protein coding gene serum amyloid P-component
Cplaq3 1 172893961 to 172895041 1080 QTL circadian period of locomotor activity 3
Tssr15250 1 172894580 to 172894597 17 - TSS region transcription start site region 15250
Tssr15251 1 172894598 to 172894603 5 - TSS region transcription start site region 15251
Tssr304 1 172894905 to 172894912 7 - TSS region transcription start site region 304
Tssr15252 1 172894925 to 172894958 33 - TSS region transcription start site region 15252
Tssr15253 1 172894968 to 172894980 12 - TSS region transcription start site region 15253
Tssr15254 1 172894983 to 172895003 20 - TSS region transcription start site region 15254
Tssr15255 1 172895008 to 172895015 7 - TSS region transcription start site region 15255
Tssr15256 1 172895025 to 172895044 19 - TSS region transcription start site region 15256
Tssr15257 1 172895048 to 172895063 15 - TSS region transcription start site region 15257
Gm35686 1 172930028 to 172960263 30235 + lncRNA gene predicted gene, 35686
Tssr10256 1 172930038 to 172930053 15 + TSS region transcription start site region 10256
Gm26077 1 172936212 to 172936334 122 - snoRNA gene predicted gene, 26077
Olfr16 1 172956768 to 172957817 1049 + protein coding gene olfactory receptor 16
Gm35742 1 172989431 to 172997844 8413 + lncRNA gene predicted gene, 35742
Tssr10257 1 172990315 to 172990337 22 + TSS region transcription start site region 10257
Pbw1 1 173004198 to 173004325 127 QTL pentobarbital withdrawal QTL 1
Bglu3 1 173004198 to 173004325 127 QTL blood glucose level 3
Cd8mts1 1 173004198 to 173004325 127 QTL CD8 T memory cell subset 1
Cplaq13 1 173004198 to 181573094 8568896 QTL circadian period of locomotor activity 13
D1Mit206 1 173004198 to 173004325 127 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 206
Sle21 1 173004198 to 173004325 127 QTL systematic lupus erythematosus susceptibility 21
D1Sta4 1 173033873 to 173034021 148 DNA segment DNA segment, Chr 1, Philip Stanier 4
Gm42472 1 173052832 to 173053690 858 - pseudogene predicted gene 42472
Gm42475 1 173076976 to 173077270 294 + pseudogene predicted gene 42475
Olfr1409-ps1 1 173097997 to 173098248 251 - pseudogene olfactory receptor 1409, pseudogene 1
Olfr1408 1 173130283 to 173131215 932 - protein coding gene olfactory receptor 1408
Olfr1407-ps1 1 173149171 to 173150354 1183 + pseudogene olfactory receptor 1407, pseudogene 1
Olfr1406 1 173183442 to 173184504 1062 - protein coding gene olfactory receptor 1406
Olfr218 1 173203358 to 173204299 941 + protein coding gene olfactory receptor 218
Olfr1404 1 173215607 to 173216640 1033 + protein coding gene olfactory receptor 1404
Fcer1a 1 173221284 to 173227214 5930 - protein coding gene Fc receptor, IgE, high affinity I, alpha polypeptide
Tssr15258 1 173227193 to 173227247 54 - TSS region transcription start site region 15258
Olfr418 1 173270147 to 173271137 990 + protein coding gene olfactory receptor 418