Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:172546976-173607270

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emrq1 1 171804480 to 172888802 1084322 QTL emotional reactivity QTL 1
4933439K11Rik 1 172541620 to 172550806 9186 - lncRNA gene RIKEN cDNA 4933439K11 gene
Tssr10238 1 172548730 to 172548763 33 + TSS region transcription start site region 10238
Tssr15232 1 172550652 to 172550717 65 - TSS region transcription start site region 15232
Tssr10239 1 172550744 to 172550769 25 + TSS region transcription start site region 10239
Tssr10240 1 172555932 to 172555942 10 + TSS region transcription start site region 10240
Vsig8 1 172555938 to 172563717 7779 + protein coding gene V-set and immunoglobulin domain containing 8
Tssr15233 1 172558123 to 172558142 19 - TSS region transcription start site region 15233
Tssr15234 1 172558147 to 172558162 15 - TSS region transcription start site region 15234
D1Mit456 1 172559415 to 172559524 109 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 456
Cpgi1058 1 172561907 to 172563640 1733 CpG island CpG island 1058
Tssr10241 1 172579305 to 172579308 3 + TSS region transcription start site region 10241
Slamf8 1 172581758 to 172590568 8810 - protein coding gene SLAM family member 8
Tssr15235 1 172588233 to 172588246 13 - TSS region transcription start site region 15235
Tssr15236 1 172588569 to 172588613 44 - TSS region transcription start site region 15236
Tssr10242 1 172588707 to 172588716 9 + TSS region transcription start site region 10242
Tssr10243 1 172588721 to 172588737 16 + TSS region transcription start site region 10243
Cpgi1059 1 172588786 to 172588947 161 CpG island CpG island 1059
Tssr10244 1 172588975 to 172588979 4 + TSS region transcription start site region 10244
Tssr15237 1 172590463 to 172590475 12 - TSS region transcription start site region 15237
Tssr15238 1 172590477 to 172590489 12 - TSS region transcription start site region 15238
Tssr15239 1 172590491 to 172590581 90 - TSS region transcription start site region 15239
Tssr15240 1 172590588 to 172590606 18 - TSS region transcription start site region 15240
Tssr15241 1 172590622 to 172590645 23 - TSS region transcription start site region 15241
Tssr15242 1 172590650 to 172590666 16 - TSS region transcription start site region 15242
Tssr15243 1 172590667 to 172590679 12 - TSS region transcription start site region 15243
Fcrl6 1 172596642 to 172602551 5909 - protein coding gene Fc receptor-like 6
Tssr15244 1 172602519 to 172602544 25 - TSS region transcription start site region 15244
Tssr15245 1 172602555 to 172602566 11 - TSS region transcription start site region 15245
Tssr15246 1 172602583 to 172602590 7 - TSS region transcription start site region 15246
32.MMHAP50FRC11.seq 1 172602670 to 172602843 173 DNA segment DNA segment, 32.MMHAP50FRC11.seq
Dusp23 1 172630764 to 172632962 2198 - protein coding gene dual specificity phosphatase 23
Cpgi1060 1 172632526 to 172633194 668 CpG island CpG island 1060
Tssr15247 1 172632791 to 172632809 18 - TSS region transcription start site region 15247
Tssr15248 1 172632815 to 172632869 54 - TSS region transcription start site region 15248
Tssr15249 1 172632931 to 172632943 12 - TSS region transcription start site region 15249
Tssr10245 1 172633064 to 172633075 11 + TSS region transcription start site region 10245
Gm35601 1 172633081 to 172658377 25296 + lncRNA gene predicted gene, 35601
Cpgi1061 1 172634695 to 172634970 275 CpG island CpG island 1061
Gm2710 1 172669034 to 172669636 602 - pseudogene predicted gene 2710
Gm22383 1 172684515 to 172684841 326 - unclassified non-coding RNA gene predicted gene, 22383
Tssr10246 1 172698046 to 172698063 17 + TSS region transcription start site region 10246
Nba9 1 172698056 to 172699966 1910 QTL New Zealand Black autoimmunity 9
Crp 1 172698056 to 172699966 1910 + protein coding gene C-reactive protein, pentraxin-related
Tssr10247 1 172698989 to 172699011 22 + TSS region transcription start site region 10247
Tssr10248 1 172699055 to 172699066 11 + TSS region transcription start site region 10248
D1Mit149.1 1 172699077 to 172699237 160 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 149.1
Tssr10249 1 172699079 to 172699094 15 + TSS region transcription start site region 10249
Tssr10250 1 172699134 to 172699146 12 + TSS region transcription start site region 10250
Tssr10251 1 172699190 to 172699200 10 + TSS region transcription start site region 10251
Bmd5c 1 172699229 to 172699330 101 QTL bone mineral density 5c
Bmd1b 1 172699229 to 173405420 706191 QTL bone mineral density 1b
D1Mit149 1 172699229 to 172699330 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 149
Tssr10252 1 172699256 to 172699261 5 + TSS region transcription start site region 10252
Tssr10253 1 172699305 to 172699316 11 + TSS region transcription start site region 10253
Tssr10254 1 172699370 to 172699379 9 + TSS region transcription start site region 10254
Tssr10255 1 172705911 to 172705947 36 + TSS region transcription start site region 10255
Gm38051 1 172781445 to 172781877 432 + pseudogene predicted gene, 38051
Gm19059 1 172824971 to 172827657 2686 + pseudogene predicted gene, 19059
Gm24817 1 172843534 to 172843638 104 - snRNA gene predicted gene, 24817
Tssr303 1 172856455 to 172856456 1 - TSS region transcription start site region 303
9430083B18Rik 1 172873551 to 172874413 862 + unclassified gene RIKEN cDNA 9430083B18 gene
Cafq1 1 172888654 to 172888802 148 QTL caffeine metabolism QTL 1
D1Mit356 1 172888654 to 172888802 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 356
Tir8 1 172888654 to 172888802 148 QTL trypanosome infection response 8
Ssta2 1 172888654 to 172888802 148 QTL susceptibility to Salmonella typhimurium antigens 2
Cplaq3 1 172893961 to 172895041 1080 QTL circadian period of locomotor activity 3
Apcs 1 172893961 to 172895041 1080 - protein coding gene serum amyloid P-component
Tssr15250 1 172894580 to 172894597 17 - TSS region transcription start site region 15250
Tssr15251 1 172894598 to 172894603 5 - TSS region transcription start site region 15251
Tssr304 1 172894905 to 172894912 7 - TSS region transcription start site region 304
Tssr15252 1 172894925 to 172894958 33 - TSS region transcription start site region 15252
Tssr15253 1 172894968 to 172894980 12 - TSS region transcription start site region 15253
Tssr15254 1 172894983 to 172895003 20 - TSS region transcription start site region 15254
Tssr15255 1 172895008 to 172895015 7 - TSS region transcription start site region 15255
Tssr15256 1 172895025 to 172895044 19 - TSS region transcription start site region 15256
Tssr15257 1 172895048 to 172895063 15 - TSS region transcription start site region 15257
Gm35686 1 172930028 to 172960263 30235 + lncRNA gene predicted gene, 35686
Tssr10256 1 172930038 to 172930053 15 + TSS region transcription start site region 10256
Gm26077 1 172936212 to 172936334 122 - snoRNA gene predicted gene, 26077
Olfr16 1 172956768 to 172957817 1049 + protein coding gene olfactory receptor 16
Gm35742 1 172989431 to 172997844 8413 + lncRNA gene predicted gene, 35742
Tssr10257 1 172990315 to 172990337 22 + TSS region transcription start site region 10257
Sle21 1 173004198 to 173004325 127 QTL systematic lupus erythematosus susceptibility 21
Cd8mts1 1 173004198 to 173004325 127 QTL CD8 T memory cell subset 1
D1Mit206 1 173004198 to 173004325 127 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 206
Pbw1 1 173004198 to 173004325 127 QTL pentobarbital withdrawal QTL 1
Cplaq13 1 173004198 to 181573094 8568896 QTL circadian period of locomotor activity 13
Bglu3 1 173004198 to 173004325 127 QTL blood glucose level 3
D1Sta4 1 173033873 to 173034021 148 DNA segment DNA segment, Chr 1, Philip Stanier 4
Gm42472 1 173052832 to 173053690 858 - pseudogene predicted gene 42472
Gm42475 1 173076976 to 173077270 294 + pseudogene predicted gene 42475
Olfr1409-ps1 1 173097997 to 173098248 251 - pseudogene olfactory receptor 1409, pseudogene 1
Olfr1408 1 173130283 to 173131215 932 - protein coding gene olfactory receptor 1408
Olfr1407-ps1 1 173149171 to 173150354 1183 + pseudogene olfactory receptor 1407, pseudogene 1
Olfr1406 1 173183442 to 173184504 1062 - protein coding gene olfactory receptor 1406
Olfr218 1 173203358 to 173204299 941 + protein coding gene olfactory receptor 218
Olfr1404 1 173215607 to 173216640 1033 + protein coding gene olfactory receptor 1404
Fcer1a 1 173221284 to 173227214 5930 - protein coding gene Fc receptor, IgE, high affinity I, alpha polypeptide
Tssr15258 1 173227193 to 173227247 54 - TSS region transcription start site region 15258
Olfr418 1 173270147 to 173271137 990 + protein coding gene olfactory receptor 418
Mptx2 1 173274461 to 173277756 3295 - protein coding gene mucosal pentraxin 2
Ackr1 1 173331886 to 173333503 1617 - protein coding gene atypical chemokine receptor 1 (Duffy blood group)
Tssr15259 1 173333370 to 173333383 13 - TSS region transcription start site region 15259
Tssr15260 1 173333410 to 173333422 12 - TSS region transcription start site region 15260
Tssr15261 1 173333459 to 173333471 12 - TSS region transcription start site region 15261
Tssr15262 1 173333474 to 173333488 14 - TSS region transcription start site region 15262
Tssr15263 1 173333504 to 173333520 16 - TSS region transcription start site region 15263
Tssr10258 1 173333556 to 173333580 24 + TSS region transcription start site region 10258
Tssr15264 1 173334022 to 173334033 11 - TSS region transcription start site region 15264
Cadm3 1 173334254 to 173367695 33441 - protein coding gene cell adhesion molecule 3
Tssr15265 1 173334528 to 173334531 3 - TSS region transcription start site region 15265
Tssr15266 1 173334917 to 173334938 21 - TSS region transcription start site region 15266
Tssr15267 1 173335319 to 173335348 29 - TSS region transcription start site region 15267
Tssr15268 1 173336039 to 173336048 9 - TSS region transcription start site region 15268
Tssr15269 1 173336810 to 173336820 10 - TSS region transcription start site region 15269
Tssr15270 1 173345803 to 173345810 7 - TSS region transcription start site region 15270
Tssr10259 1 173350129 to 173350137 8 + TSS region transcription start site region 10259
Tssr10260 1 173350151 to 173350177 26 + TSS region transcription start site region 10260
Tssr10261 1 173350179 to 173350206 27 + TSS region transcription start site region 10261
Aim2 1 173350879 to 173466040 115161 + protein coding gene absent in melanoma 2
Cpgi1062 1 173366872 to 173368001 1129 CpG island CpG island 1062
Tssr15271 1 173367483 to 173367486 3 - TSS region transcription start site region 15271
Tssr15272 1 173367638 to 173367656 18 - TSS region transcription start site region 15272
Tssr15273 1 173367666 to 173367692 26 - TSS region transcription start site region 15273
Tssr15274 1 173367855 to 173367886 31 - TSS region transcription start site region 15274
Bmd5a 1 173368361 to 173508588 140227 QTL bone mineral density 5a
D1Mit522 1 173382162 to 173382478 316 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-522
n-TRtct5 1 173390329 to 173390402 73 + tRNA gene nuclear encoded tRNA arginine 5 (anticodon TCT)
D1Mit355 1 173405312 to 173405420 108 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 355
D1Mit355.2 1 173405417 to 173405540 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 355.2
Tssr10262 1 173419174 to 173419213 39 + TSS region transcription start site region 10262
Tssr10263 1 173419220 to 173419231 11 + TSS region transcription start site region 10263
Tssr10264 1 173419260 to 173419288 28 + TSS region transcription start site region 10264
Tssr10265 1 173419293 to 173419344 51 + TSS region transcription start site region 10265
Tssr10266 1 173419347 to 173419375 28 + TSS region transcription start site region 10266
Tssr10267 1 173419384 to 173419398 14 + TSS region transcription start site region 10267
Tssr10268 1 173419419 to 173419426 7 + TSS region transcription start site region 10268
Tssr10269 1 173420556 to 173420564 8 + TSS region transcription start site region 10269
Tssr10270 1 173420567 to 173420622 55 + TSS region transcription start site region 10270
Tssr10271 1 173420628 to 173420639 11 + TSS region transcription start site region 10271
Tssr10272 1 173427609 to 173427613 4 + TSS region transcription start site region 10272
Tssr10273 1 173436014 to 173436023 9 + TSS region transcription start site region 10273
Tssr10274 1 173436101 to 173436116 15 + TSS region transcription start site region 10274
Tssr15275 1 173437212 to 173437236 24 - TSS region transcription start site region 15275
Tssr15276 1 173437241 to 173437249 8 - TSS region transcription start site region 15276
Tssr10275 1 173440718 to 173440729 11 + TSS region transcription start site region 10275
Tssr10276 1 173444563 to 173444599 36 + TSS region transcription start site region 10276
D1Sta6 1 173451821 to 173451885 64 DNA segment DNA segment, Chr 1, Philip Stanier 6
Ifi206 1 173468485 to 173491041 22556 - protein coding gene interferon activated gene 206
Tssr15277 1 173490933 to 173490940 7 - TSS region transcription start site region 15277
Ifi214 1 173521311 to 173535957 14646 - protein coding gene interferon activated gene 214
Gm44481 1 173524086 to 173524169 83 + miRNA gene predicted gene, 44481
Tssr15278 1 173526230 to 173526241 11 - TSS region transcription start site region 15278
Tssr15279 1 173535985 to 173536030 45 - TSS region transcription start site region 15279
Ifi213 1 173566595 to 173599302 32707 - protein coding gene interferon activated gene 213
Tssr15280 1 173599243 to 173599277 34 - TSS region transcription start site region 15280