Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:172525048-173265063

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emrq1 1 171804480 to 172888802 1084322 QTL emotional reactivity QTL 1
Cfap45 1 172521130 to 172545870 24740 + protein coding gene cilia and flagella associated protein 45
Tssr15230 1 172526374 to 172526382 8 - TSS region transcription start site region 15230
Cpgi1055 1 172526746 to 172527016 270 CpG island CpG island 1055
Tssr15231 1 172526832 to 172526834 2 - TSS region transcription start site region 15231
Cpgi1056 1 172532445 to 172532849 404 CpG island CpG island 1056
4933439K11Rik 1 172541620 to 172550806 9186 - lncRNA gene RIKEN cDNA 4933439K11 gene
Cpgi1057 1 172544961 to 172545418 457 CpG island CpG island 1057
Tssr10238 1 172548730 to 172548763 33 + TSS region transcription start site region 10238
Tssr15232 1 172550652 to 172550717 65 - TSS region transcription start site region 15232
Tssr10239 1 172550744 to 172550769 25 + TSS region transcription start site region 10239
Tssr10240 1 172555932 to 172555942 10 + TSS region transcription start site region 10240
Vsig8 1 172555938 to 172563717 7779 + protein coding gene V-set and immunoglobulin domain containing 8
Tssr15233 1 172558123 to 172558142 19 - TSS region transcription start site region 15233
Tssr15234 1 172558147 to 172558162 15 - TSS region transcription start site region 15234
D1Mit456 1 172559415 to 172559524 109 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 456
Cpgi1058 1 172561907 to 172563640 1733 CpG island CpG island 1058
Tssr10241 1 172579305 to 172579308 3 + TSS region transcription start site region 10241
Slamf8 1 172581758 to 172590568 8810 - protein coding gene SLAM family member 8
Tssr15235 1 172588233 to 172588246 13 - TSS region transcription start site region 15235
Tssr15236 1 172588569 to 172588613 44 - TSS region transcription start site region 15236
Tssr10242 1 172588707 to 172588716 9 + TSS region transcription start site region 10242
Tssr10243 1 172588721 to 172588737 16 + TSS region transcription start site region 10243
Cpgi1059 1 172588786 to 172588947 161 CpG island CpG island 1059
Tssr10244 1 172588975 to 172588979 4 + TSS region transcription start site region 10244
Tssr15237 1 172590463 to 172590475 12 - TSS region transcription start site region 15237
Tssr15238 1 172590477 to 172590489 12 - TSS region transcription start site region 15238
Tssr15239 1 172590491 to 172590581 90 - TSS region transcription start site region 15239
Tssr15240 1 172590588 to 172590606 18 - TSS region transcription start site region 15240
Tssr15241 1 172590622 to 172590645 23 - TSS region transcription start site region 15241
Tssr15242 1 172590650 to 172590666 16 - TSS region transcription start site region 15242
Tssr15243 1 172590667 to 172590679 12 - TSS region transcription start site region 15243
Fcrl6 1 172596642 to 172602551 5909 - protein coding gene Fc receptor-like 6
Tssr15244 1 172602519 to 172602544 25 - TSS region transcription start site region 15244
Tssr15245 1 172602555 to 172602566 11 - TSS region transcription start site region 15245
Tssr15246 1 172602583 to 172602590 7 - TSS region transcription start site region 15246
32.MMHAP50FRC11.seq 1 172602670 to 172602843 173 DNA segment DNA segment, 32.MMHAP50FRC11.seq
Dusp23 1 172630764 to 172632962 2198 - protein coding gene dual specificity phosphatase 23
Cpgi1060 1 172632526 to 172633194 668 CpG island CpG island 1060
Tssr15247 1 172632791 to 172632809 18 - TSS region transcription start site region 15247
Tssr15248 1 172632815 to 172632869 54 - TSS region transcription start site region 15248
Tssr15249 1 172632931 to 172632943 12 - TSS region transcription start site region 15249
Tssr10245 1 172633064 to 172633075 11 + TSS region transcription start site region 10245
Gm35601 1 172633081 to 172658377 25296 + lncRNA gene predicted gene, 35601
Cpgi1061 1 172634695 to 172634970 275 CpG island CpG island 1061
Gm2710 1 172669034 to 172669636 602 - pseudogene predicted gene 2710
Gm22383 1 172684515 to 172684841 326 - unclassified non-coding RNA gene predicted gene, 22383
Tssr10246 1 172698046 to 172698063 17 + TSS region transcription start site region 10246
Nba9 1 172698056 to 172699966 1910 QTL New Zealand Black autoimmunity 9
Crp 1 172698056 to 172699966 1910 + protein coding gene C-reactive protein, pentraxin-related
Tssr10247 1 172698989 to 172699011 22 + TSS region transcription start site region 10247
Tssr10248 1 172699055 to 172699066 11 + TSS region transcription start site region 10248
D1Mit149.1 1 172699077 to 172699237 160 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 149.1
Tssr10249 1 172699079 to 172699094 15 + TSS region transcription start site region 10249
Tssr10250 1 172699134 to 172699146 12 + TSS region transcription start site region 10250
Tssr10251 1 172699190 to 172699200 10 + TSS region transcription start site region 10251
Bmd5c 1 172699229 to 172699330 101 QTL bone mineral density 5c
Bmd1b 1 172699229 to 173405420 706191 QTL bone mineral density 1b
D1Mit149 1 172699229 to 172699330 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 149
Tssr10252 1 172699256 to 172699261 5 + TSS region transcription start site region 10252
Tssr10253 1 172699305 to 172699316 11 + TSS region transcription start site region 10253
Tssr10254 1 172699370 to 172699379 9 + TSS region transcription start site region 10254
Tssr10255 1 172705911 to 172705947 36 + TSS region transcription start site region 10255
Gm38051 1 172781445 to 172781877 432 + pseudogene predicted gene, 38051
Gm19059 1 172824971 to 172827657 2686 + pseudogene predicted gene, 19059
Gm24817 1 172843534 to 172843638 104 - snRNA gene predicted gene, 24817
Tssr303 1 172856455 to 172856456 1 - TSS region transcription start site region 303
9430083B18Rik 1 172873551 to 172874413 862 + unclassified gene RIKEN cDNA 9430083B18 gene
D1Mit356 1 172888654 to 172888802 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 356
Cafq1 1 172888654 to 172888802 148 QTL caffeine metabolism QTL 1
Ssta2 1 172888654 to 172888802 148 QTL susceptibility to Salmonella typhimurium antigens 2
Tir8 1 172888654 to 172888802 148 QTL trypanosome infection response 8
Apcs 1 172893961 to 172895041 1080 - protein coding gene serum amyloid P-component
Cplaq3 1 172893961 to 172895041 1080 QTL circadian period of locomotor activity 3
Tssr15250 1 172894580 to 172894597 17 - TSS region transcription start site region 15250
Tssr15251 1 172894598 to 172894603 5 - TSS region transcription start site region 15251
Tssr304 1 172894905 to 172894912 7 - TSS region transcription start site region 304
Tssr15252 1 172894925 to 172894958 33 - TSS region transcription start site region 15252
Tssr15253 1 172894968 to 172894980 12 - TSS region transcription start site region 15253
Tssr15254 1 172894983 to 172895003 20 - TSS region transcription start site region 15254
Tssr15255 1 172895008 to 172895015 7 - TSS region transcription start site region 15255
Tssr15256 1 172895025 to 172895044 19 - TSS region transcription start site region 15256
Tssr15257 1 172895048 to 172895063 15 - TSS region transcription start site region 15257
Gm35686 1 172930028 to 172960263 30235 + lncRNA gene predicted gene, 35686
Tssr10256 1 172930038 to 172930053 15 + TSS region transcription start site region 10256
Gm26077 1 172936212 to 172936334 122 - snoRNA gene predicted gene, 26077
Olfr16 1 172956768 to 172957817 1049 + protein coding gene olfactory receptor 16
Gm35742 1 172989431 to 172997844 8413 + lncRNA gene predicted gene, 35742
Tssr10257 1 172990315 to 172990337 22 + TSS region transcription start site region 10257
Sle21 1 173004198 to 173004325 127 QTL systematic lupus erythematosus susceptibility 21
Pbw1 1 173004198 to 173004325 127 QTL pentobarbital withdrawal QTL 1
Cplaq13 1 173004198 to 181573094 8568896 QTL circadian period of locomotor activity 13
Cd8mts1 1 173004198 to 173004325 127 QTL CD8 T memory cell subset 1
D1Mit206 1 173004198 to 173004325 127 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 206
Bglu3 1 173004198 to 173004325 127 QTL blood glucose level 3
D1Sta4 1 173033873 to 173034021 148 DNA segment DNA segment, Chr 1, Philip Stanier 4
Gm42472 1 173052832 to 173053690 858 - pseudogene predicted gene 42472
Gm42475 1 173076976 to 173077270 294 + pseudogene predicted gene 42475
Olfr1409-ps1 1 173097997 to 173098248 251 - pseudogene olfactory receptor 1409, pseudogene 1
Olfr1408 1 173130283 to 173131215 932 - protein coding gene olfactory receptor 1408
Olfr1407-ps1 1 173149171 to 173150354 1183 + pseudogene olfactory receptor 1407, pseudogene 1
Olfr1406 1 173183442 to 173184504 1062 - protein coding gene olfactory receptor 1406
Olfr218 1 173203358 to 173204299 941 + protein coding gene olfactory receptor 218
Olfr1404 1 173215607 to 173216640 1033 + protein coding gene olfactory receptor 1404
Fcer1a 1 173221284 to 173227214 5930 - protein coding gene Fc receptor, IgE, high affinity I, alpha polypeptide
Tssr15258 1 173227193 to 173227247 54 - TSS region transcription start site region 15258