Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:172456976-173697270

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250 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emrq1 1 171804480 to 172888802 1084322 QTL emotional reactivity QTL 1
Gm7804 1 172474023 to 172474814 791 + pseudogene predicted gene 7804
Tssr15219 1 172475165 to 172475200 35 - TSS region transcription start site region 15219
Slamf9 1 172475358 to 172478575 3217 + protein coding gene SLAM family member 9
Tssr10198 1 172475371 to 172475384 13 + TSS region transcription start site region 10198
Tssr10199 1 172475387 to 172475412 25 + TSS region transcription start site region 10199
Tssr10200 1 172475427 to 172475434 7 + TSS region transcription start site region 10200
Gm35522 1 172479501 to 172481663 2162 - lncRNA gene predicted gene, 35522
Cpgi1050 1 172481760 to 172482342 582 CpG island CpG island 1050
Tssr10201 1 172481765 to 172481792 27 + TSS region transcription start site region 10201
Igsf9 1 172481788 to 172498878 17090 + protein coding gene immunoglobulin superfamily, member 9
Tssr10202 1 172481800 to 172481819 19 + TSS region transcription start site region 10202
Tssr10203 1 172481902 to 172481907 5 + TSS region transcription start site region 10203
Tssr15220 1 172482060 to 172482068 8 - TSS region transcription start site region 15220
Tssr15221 1 172482118 to 172482131 13 - TSS region transcription start site region 15221
Tssr10204 1 172482212 to 172482231 19 + TSS region transcription start site region 10204
Tssr301 1 172484270 to 172484274 4 + TSS region transcription start site region 301
Cpgi1051 1 172490513 to 172490705 192 CpG island CpG island 1051
Tssr10205 1 172492180 to 172492192 12 + TSS region transcription start site region 10205
Cpgi1052 1 172495992 to 172496364 372 CpG island CpG island 1052
Tssr15222 1 172496126 to 172496135 9 - TSS region transcription start site region 15222
Tssr10206 1 172496273 to 172496293 20 + TSS region transcription start site region 10206
Tssr10207 1 172499858 to 172499869 11 + TSS region transcription start site region 10207
Tssr10208 1 172499887 to 172499912 25 + TSS region transcription start site region 10208
Tssr10209 1 172499916 to 172499932 16 + TSS region transcription start site region 10209
Tssr10210 1 172499948 to 172499979 31 + TSS region transcription start site region 10210
Tssr10211 1 172500002 to 172500013 11 + TSS region transcription start site region 10211
Cpgi1053 1 172500011 to 172501146 1135 CpG island CpG island 1053
Tssr15223 1 172500157 to 172500162 5 - TSS region transcription start site region 15223
Tssr10212 1 172500241 to 172500248 7 + TSS region transcription start site region 10212
Tagln2 1 172500246 to 172507375 7129 + protein coding gene transgelin 2
Tssr10213 1 172500253 to 172500255 2 + TSS region transcription start site region 10213
Tssr10214 1 172500265 to 172500288 23 + TSS region transcription start site region 10214
Tssr15224 1 172500694 to 172500703 9 - TSS region transcription start site region 15224
Tssr10215 1 172501202 to 172501239 37 + TSS region transcription start site region 10215
Tssr10216 1 172501240 to 172501257 17 + TSS region transcription start site region 10216
Tssr15225 1 172501615 to 172501617 2 - TSS region transcription start site region 15225
Tssr10217 1 172501944 to 172501989 45 + TSS region transcription start site region 10217
Tssr10218 1 172502580 to 172502592 12 + TSS region transcription start site region 10218
Tssr10219 1 172505263 to 172505300 37 + TSS region transcription start site region 10219
Tssr10220 1 172505751 to 172505771 20 + TSS region transcription start site region 10220
Tssr10221 1 172505793 to 172505806 13 + TSS region transcription start site region 10221
Tssr10222 1 172505879 to 172505899 20 + TSS region transcription start site region 10222
Tssr10223 1 172506226 to 172506267 41 + TSS region transcription start site region 10223
Tssr10224 1 172506572 to 172506584 12 + TSS region transcription start site region 10224
Tssr10225 1 172506611 to 172506623 12 + TSS region transcription start site region 10225
Tssr10226 1 172506624 to 172506642 18 + TSS region transcription start site region 10226
Tssr10227 1 172506665 to 172506704 39 + TSS region transcription start site region 10227
Tssr10228 1 172506717 to 172506735 18 + TSS region transcription start site region 10228
Tssr10229 1 172506767 to 172506785 18 + TSS region transcription start site region 10229
Tssr10230 1 172506788 to 172506850 62 + TSS region transcription start site region 10230
Tssr10231 1 172506851 to 172506860 9 + TSS region transcription start site region 10231
Tssr15226 1 172506852 to 172506896 44 - TSS region transcription start site region 15226
Tssr10232 1 172506895 to 172506924 29 + TSS region transcription start site region 10232
Tssr10233 1 172506926 to 172506959 33 + TSS region transcription start site region 10233
Tssr15227 1 172506945 to 172506986 41 - TSS region transcription start site region 15227
Tssr10234 1 172506985 to 172506997 12 + TSS region transcription start site region 10234
Tssr10235 1 172513245 to 172513257 12 + TSS region transcription start site region 10235
Gm37125 1 172513249 to 172514807 1558 + lncRNA gene predicted gene, 37125
Tssr15228 1 172513933 to 172513980 47 - TSS region transcription start site region 15228
Tssr302 1 172513999 to 172514012 13 - TSS region transcription start site region 302
Tssr10236 1 172514121 to 172514147 26 + TSS region transcription start site region 10236
Cpgi1054 1 172520963 to 172521301 338 CpG island CpG island 1054
Tssr10237 1 172521106 to 172521150 44 + TSS region transcription start site region 10237
Cfap45 1 172521130 to 172545870 24740 + protein coding gene cilia and flagella associated protein 45
Tssr15229 1 172522671 to 172522682 11 - TSS region transcription start site region 15229
Tssr15230 1 172526374 to 172526382 8 - TSS region transcription start site region 15230
Cpgi1055 1 172526746 to 172527016 270 CpG island CpG island 1055
Tssr15231 1 172526832 to 172526834 2 - TSS region transcription start site region 15231
Cpgi1056 1 172532445 to 172532849 404 CpG island CpG island 1056
4933439K11Rik 1 172541620 to 172550806 9186 - lncRNA gene RIKEN cDNA 4933439K11 gene
Cpgi1057 1 172544961 to 172545418 457 CpG island CpG island 1057
Tssr10238 1 172548730 to 172548763 33 + TSS region transcription start site region 10238
Tssr15232 1 172550652 to 172550717 65 - TSS region transcription start site region 15232
Tssr10239 1 172550744 to 172550769 25 + TSS region transcription start site region 10239
Tssr10240 1 172555932 to 172555942 10 + TSS region transcription start site region 10240
Vsig8 1 172555938 to 172563717 7779 + protein coding gene V-set and immunoglobulin domain containing 8
Tssr15233 1 172558123 to 172558142 19 - TSS region transcription start site region 15233
Tssr15234 1 172558147 to 172558162 15 - TSS region transcription start site region 15234
D1Mit456 1 172559415 to 172559524 109 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 456
Cpgi1058 1 172561907 to 172563640 1733 CpG island CpG island 1058
Tssr10241 1 172579305 to 172579308 3 + TSS region transcription start site region 10241
Slamf8 1 172581758 to 172590568 8810 - protein coding gene SLAM family member 8
Tssr15235 1 172588233 to 172588246 13 - TSS region transcription start site region 15235
Tssr15236 1 172588569 to 172588613 44 - TSS region transcription start site region 15236
Tssr10242 1 172588707 to 172588716 9 + TSS region transcription start site region 10242
Tssr10243 1 172588721 to 172588737 16 + TSS region transcription start site region 10243
Cpgi1059 1 172588786 to 172588947 161 CpG island CpG island 1059
Tssr10244 1 172588975 to 172588979 4 + TSS region transcription start site region 10244
Tssr15237 1 172590463 to 172590475 12 - TSS region transcription start site region 15237
Tssr15238 1 172590477 to 172590489 12 - TSS region transcription start site region 15238
Tssr15239 1 172590491 to 172590581 90 - TSS region transcription start site region 15239
Tssr15240 1 172590588 to 172590606 18 - TSS region transcription start site region 15240
Tssr15241 1 172590622 to 172590645 23 - TSS region transcription start site region 15241
Tssr15242 1 172590650 to 172590666 16 - TSS region transcription start site region 15242
Tssr15243 1 172590667 to 172590679 12 - TSS region transcription start site region 15243
Fcrl6 1 172596642 to 172602551 5909 - protein coding gene Fc receptor-like 6
Tssr15244 1 172602519 to 172602544 25 - TSS region transcription start site region 15244
Tssr15245 1 172602555 to 172602566 11 - TSS region transcription start site region 15245
Tssr15246 1 172602583 to 172602590 7 - TSS region transcription start site region 15246
32.MMHAP50FRC11.seq 1 172602670 to 172602843 173 DNA segment DNA segment, 32.MMHAP50FRC11.seq
Dusp23 1 172630764 to 172632962 2198 - protein coding gene dual specificity phosphatase 23
Cpgi1060 1 172632526 to 172633194 668 CpG island CpG island 1060
Tssr15247 1 172632791 to 172632809 18 - TSS region transcription start site region 15247
Tssr15248 1 172632815 to 172632869 54 - TSS region transcription start site region 15248
Tssr15249 1 172632931 to 172632943 12 - TSS region transcription start site region 15249
Tssr10245 1 172633064 to 172633075 11 + TSS region transcription start site region 10245
Gm35601 1 172633081 to 172658377 25296 + lncRNA gene predicted gene, 35601
Cpgi1061 1 172634695 to 172634970 275 CpG island CpG island 1061
Gm2710 1 172669034 to 172669636 602 - pseudogene predicted gene 2710
Gm22383 1 172684515 to 172684841 326 - unclassified non-coding RNA gene predicted gene, 22383
Tssr10246 1 172698046 to 172698063 17 + TSS region transcription start site region 10246
Crp 1 172698056 to 172699966 1910 + protein coding gene C-reactive protein, pentraxin-related
Nba9 1 172698056 to 172699966 1910 QTL New Zealand Black autoimmunity 9
Tssr10247 1 172698989 to 172699011 22 + TSS region transcription start site region 10247
Tssr10248 1 172699055 to 172699066 11 + TSS region transcription start site region 10248
D1Mit149.1 1 172699077 to 172699237 160 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 149.1
Tssr10249 1 172699079 to 172699094 15 + TSS region transcription start site region 10249
Tssr10250 1 172699134 to 172699146 12 + TSS region transcription start site region 10250
Tssr10251 1 172699190 to 172699200 10 + TSS region transcription start site region 10251
D1Mit149 1 172699229 to 172699330 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 149
Bmd1b 1 172699229 to 173405420 706191 QTL bone mineral density 1b
Bmd5c 1 172699229 to 172699330 101 QTL bone mineral density 5c
Tssr10252 1 172699256 to 172699261 5 + TSS region transcription start site region 10252
Tssr10253 1 172699305 to 172699316 11 + TSS region transcription start site region 10253
Tssr10254 1 172699370 to 172699379 9 + TSS region transcription start site region 10254
Tssr10255 1 172705911 to 172705947 36 + TSS region transcription start site region 10255
Gm38051 1 172781445 to 172781877 432 + pseudogene predicted gene, 38051
Gm19059 1 172824971 to 172827657 2686 + pseudogene predicted gene, 19059
Gm24817 1 172843534 to 172843638 104 - snRNA gene predicted gene, 24817
Tssr303 1 172856455 to 172856456 1 - TSS region transcription start site region 303
9430083B18Rik 1 172873551 to 172874413 862 + unclassified gene RIKEN cDNA 9430083B18 gene
D1Mit356 1 172888654 to 172888802 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 356
Cafq1 1 172888654 to 172888802 148 QTL caffeine metabolism QTL 1
Tir8 1 172888654 to 172888802 148 QTL trypanosome infection response 8
Ssta2 1 172888654 to 172888802 148 QTL susceptibility to Salmonella typhimurium antigens 2
Cplaq3 1 172893961 to 172895041 1080 QTL circadian period of locomotor activity 3
Apcs 1 172893961 to 172895041 1080 - protein coding gene serum amyloid P-component
Tssr15250 1 172894580 to 172894597 17 - TSS region transcription start site region 15250
Tssr15251 1 172894598 to 172894603 5 - TSS region transcription start site region 15251
Tssr304 1 172894905 to 172894912 7 - TSS region transcription start site region 304
Tssr15252 1 172894925 to 172894958 33 - TSS region transcription start site region 15252
Tssr15253 1 172894968 to 172894980 12 - TSS region transcription start site region 15253
Tssr15254 1 172894983 to 172895003 20 - TSS region transcription start site region 15254
Tssr15255 1 172895008 to 172895015 7 - TSS region transcription start site region 15255
Tssr15256 1 172895025 to 172895044 19 - TSS region transcription start site region 15256
Tssr15257 1 172895048 to 172895063 15 - TSS region transcription start site region 15257
Gm35686 1 172930028 to 172960263 30235 + lncRNA gene predicted gene, 35686
Tssr10256 1 172930038 to 172930053 15 + TSS region transcription start site region 10256
Gm26077 1 172936212 to 172936334 122 - snoRNA gene predicted gene, 26077
Olfr16 1 172956768 to 172957817 1049 + protein coding gene olfactory receptor 16
Gm35742 1 172989431 to 172997844 8413 + lncRNA gene predicted gene, 35742
Tssr10257 1 172990315 to 172990337 22 + TSS region transcription start site region 10257
Cplaq13 1 173004198 to 181573094 8568896 QTL circadian period of locomotor activity 13
Sle21 1 173004198 to 173004325 127 QTL systematic lupus erythematosus susceptibility 21
D1Mit206 1 173004198 to 173004325 127 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 206
Pbw1 1 173004198 to 173004325 127 QTL pentobarbital withdrawal QTL 1
Cd8mts1 1 173004198 to 173004325 127 QTL CD8 T memory cell subset 1
Bglu3 1 173004198 to 173004325 127 QTL blood glucose level 3
D1Sta4 1 173033873 to 173034021 148 DNA segment DNA segment, Chr 1, Philip Stanier 4
Gm42472 1 173052832 to 173053690 858 - pseudogene predicted gene 42472
Gm42475 1 173076976 to 173077270 294 + pseudogene predicted gene 42475
Olfr1409-ps1 1 173097997 to 173098248 251 - pseudogene olfactory receptor 1409, pseudogene 1
Olfr1408 1 173130283 to 173131215 932 - protein coding gene olfactory receptor 1408
Olfr1407-ps1 1 173149171 to 173150354 1183 + pseudogene olfactory receptor 1407, pseudogene 1
Olfr1406 1 173183442 to 173184504 1062 - protein coding gene olfactory receptor 1406
Olfr218 1 173203358 to 173204299 941 + protein coding gene olfactory receptor 218
Olfr1404 1 173215607 to 173216640 1033 + protein coding gene olfactory receptor 1404
Fcer1a 1 173221284 to 173227214 5930 - protein coding gene Fc receptor, IgE, high affinity I, alpha polypeptide
Tssr15258 1 173227193 to 173227247 54 - TSS region transcription start site region 15258
Olfr418 1 173270147 to 173271137 990 + protein coding gene olfactory receptor 418
Mptx2 1 173274461 to 173277756 3295 - protein coding gene mucosal pentraxin 2
Ackr1 1 173331886 to 173333503 1617 - protein coding gene atypical chemokine receptor 1 (Duffy blood group)
Tssr15259 1 173333370 to 173333383 13 - TSS region transcription start site region 15259
Tssr15260 1 173333410 to 173333422 12 - TSS region transcription start site region 15260
Tssr15261 1 173333459 to 173333471 12 - TSS region transcription start site region 15261
Tssr15262 1 173333474 to 173333488 14 - TSS region transcription start site region 15262
Tssr15263 1 173333504 to 173333520 16 - TSS region transcription start site region 15263
Tssr10258 1 173333556 to 173333580 24 + TSS region transcription start site region 10258
Tssr15264 1 173334022 to 173334033 11 - TSS region transcription start site region 15264
Cadm3 1 173334254 to 173367695 33441 - protein coding gene cell adhesion molecule 3
Tssr15265 1 173334528 to 173334531 3 - TSS region transcription start site region 15265
Tssr15266 1 173334917 to 173334938 21 - TSS region transcription start site region 15266
Tssr15267 1 173335319 to 173335348 29 - TSS region transcription start site region 15267
Tssr15268 1 173336039 to 173336048 9 - TSS region transcription start site region 15268
Tssr15269 1 173336810 to 173336820 10 - TSS region transcription start site region 15269
Tssr15270 1 173345803 to 173345810 7 - TSS region transcription start site region 15270
Tssr10259 1 173350129 to 173350137 8 + TSS region transcription start site region 10259
Tssr10260 1 173350151 to 173350177 26 + TSS region transcription start site region 10260
Tssr10261 1 173350179 to 173350206 27 + TSS region transcription start site region 10261
Aim2 1 173350879 to 173466040 115161 + protein coding gene absent in melanoma 2
Cpgi1062 1 173366872 to 173368001 1129 CpG island CpG island 1062
Tssr15271 1 173367483 to 173367486 3 - TSS region transcription start site region 15271
Tssr15272 1 173367638 to 173367656 18 - TSS region transcription start site region 15272
Tssr15273 1 173367666 to 173367692 26 - TSS region transcription start site region 15273
Tssr15274 1 173367855 to 173367886 31 - TSS region transcription start site region 15274
Bmd5a 1 173368361 to 173508588 140227 QTL bone mineral density 5a
D1Mit522 1 173382162 to 173382478 316 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-522
n-TRtct5 1 173390329 to 173390402 73 + tRNA gene nuclear encoded tRNA arginine 5 (anticodon TCT)
D1Mit355 1 173405312 to 173405420 108 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 355