Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:172283786-172893947

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emrq1 1 171804480 to 172888802 1084322 QTL emotional reactivity QTL 1
Atp1a2 1 172271709 to 172298064 26355 - protein coding gene ATPase, Na+/K+ transporting, alpha 2 polypeptide
Gm39704 1 172287892 to 172289294 1402 - lncRNA gene predicted gene, 39704
Tssr15205 1 172289387 to 172289398 11 - TSS region transcription start site region 15205
Tssr15206 1 172291323 to 172291354 31 - TSS region transcription start site region 15206
Tssr15207 1 172293666 to 172293677 11 - TSS region transcription start site region 15207
Tssr15208 1 172297989 to 172298008 19 - TSS region transcription start site region 15208
Cpgi1040 1 172310046 to 172310212 166 CpG island CpG island 1040
Cpgi1041 1 172311972 to 172312995 1023 CpG island CpG island 1041
Igsf8 1 172312367 to 172319843 7476 + protein coding gene immunoglobulin superfamily, member 8
Tssr10182 1 172312378 to 172312437 59 + TSS region transcription start site region 10182
Tssr15209 1 172313991 to 172314035 44 - TSS region transcription start site region 15209
Tssr298 1 172317563 to 172317581 18 + TSS region transcription start site region 298
Cpgi1042 1 172318132 to 172318607 475 CpG island CpG island 1042
Kcnj9 1 172320501 to 172329318 8817 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 9
Gm36937 1 172322994 to 172323661 667 + antisense lncRNA gene predicted gene, 36937
Cpgi1043 1 172325544 to 172326955 1411 CpG island CpG island 1043
Tssr15210 1 172326218 to 172326225 7 - TSS region transcription start site region 15210
Tssr15211 1 172326228 to 172326238 10 - TSS region transcription start site region 15211
Tssr15212 1 172326248 to 172326255 7 - TSS region transcription start site region 15212
Tssr15213 1 172329261 to 172329307 46 - TSS region transcription start site region 15213
Tssr15214 1 172329317 to 172329326 9 - TSS region transcription start site region 15214
Tssr15215 1 172335933 to 172335946 13 - TSS region transcription start site region 15215
Cpgi1044 1 172340755 to 172341502 747 CpG island CpG island 1044
Tssr10183 1 172340907 to 172340935 28 + TSS region transcription start site region 10183
Tssr15216 1 172341030 to 172341045 15 - TSS region transcription start site region 15216
Tssr10184 1 172341197 to 172341217 20 + TSS region transcription start site region 10184
Kcnj10 1 172341210 to 172374085 32875 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 10
Tssr10185 1 172341304 to 172341322 18 + TSS region transcription start site region 10185
Tssr10186 1 172341326 to 172341349 23 + TSS region transcription start site region 10186
Tssr10187 1 172341353 to 172341370 17 + TSS region transcription start site region 10187
Tssr10188 1 172341419 to 172341425 6 + TSS region transcription start site region 10188
Tssr10189 1 172343178 to 172343198 20 + TSS region transcription start site region 10189
Cpgi1045 1 172368929 to 172369456 527 CpG island CpG island 1045
Cpgi1046 1 172369784 to 172369969 185 CpG island CpG island 1046
Tssr10190 1 172370473 to 172370485 12 + TSS region transcription start site region 10190
Tssr10191 1 172370684 to 172370701 17 + TSS region transcription start site region 10191
Tssr10192 1 172370864 to 172370881 17 + TSS region transcription start site region 10192
2810449G22Rik 1 172374969 to 172376690 1721 unclassified gene RIKEN cDNA 2810449G22 gene
Cpgi1047 1 172376213 to 172377609 1396 CpG island CpG island 1047
Tssr15217 1 172376288 to 172376318 30 - TSS region transcription start site region 15217
Tssr10193 1 172376528 to 172376599 71 + TSS region transcription start site region 10193
Pigm 1 172376546 to 172384099 7553 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class M
Tssr10194 1 172376600 to 172376624 24 + TSS region transcription start site region 10194
Tssr10195 1 172376907 to 172376933 26 + TSS region transcription start site region 10195
Tssr15218 1 172377981 to 172378000 19 - TSS region transcription start site region 15218
Gm37145 1 172388234 to 172390989 2755 - unclassified gene predicted gene, 37145
Cpgi1048 1 172392160 to 172392410 250 CpG island CpG island 1048
Tssr299 1 172428899 to 172428914 15 + TSS region transcription start site region 299
Tssr300 1 172430949 to 172430956 7 + TSS region transcription start site region 300
Tssr10196 1 172431010 to 172431021 11 + TSS region transcription start site region 10196
Tssr10197 1 172435299 to 172435312 13 + TSS region transcription start site region 10197
Cpgi1049 1 172451123 to 172451275 152 CpG island CpG island 1049
Gm7804 1 172474023 to 172474814 791 + pseudogene predicted gene 7804
Tssr15219 1 172475165 to 172475200 35 - TSS region transcription start site region 15219
Slamf9 1 172475358 to 172478575 3217 + protein coding gene SLAM family member 9
Tssr10198 1 172475371 to 172475384 13 + TSS region transcription start site region 10198
Tssr10199 1 172475387 to 172475412 25 + TSS region transcription start site region 10199
Tssr10200 1 172475427 to 172475434 7 + TSS region transcription start site region 10200
Gm35522 1 172479501 to 172481663 2162 - lncRNA gene predicted gene, 35522
Cpgi1050 1 172481760 to 172482342 582 CpG island CpG island 1050
Tssr10201 1 172481765 to 172481792 27 + TSS region transcription start site region 10201
Igsf9 1 172481788 to 172498878 17090 + protein coding gene immunoglobulin superfamily, member 9
Tssr10202 1 172481800 to 172481819 19 + TSS region transcription start site region 10202
Tssr10203 1 172481902 to 172481907 5 + TSS region transcription start site region 10203
Tssr15220 1 172482060 to 172482068 8 - TSS region transcription start site region 15220
Tssr15221 1 172482118 to 172482131 13 - TSS region transcription start site region 15221
Tssr10204 1 172482212 to 172482231 19 + TSS region transcription start site region 10204
Tssr301 1 172484270 to 172484274 4 + TSS region transcription start site region 301
Cpgi1051 1 172490513 to 172490705 192 CpG island CpG island 1051
Tssr10205 1 172492180 to 172492192 12 + TSS region transcription start site region 10205
Cpgi1052 1 172495992 to 172496364 372 CpG island CpG island 1052
Tssr15222 1 172496126 to 172496135 9 - TSS region transcription start site region 15222
Tssr10206 1 172496273 to 172496293 20 + TSS region transcription start site region 10206
Tssr10207 1 172499858 to 172499869 11 + TSS region transcription start site region 10207
Tssr10208 1 172499887 to 172499912 25 + TSS region transcription start site region 10208
Tssr10209 1 172499916 to 172499932 16 + TSS region transcription start site region 10209
Tssr10210 1 172499948 to 172499979 31 + TSS region transcription start site region 10210
Tssr10211 1 172500002 to 172500013 11 + TSS region transcription start site region 10211
Cpgi1053 1 172500011 to 172501146 1135 CpG island CpG island 1053
Tssr15223 1 172500157 to 172500162 5 - TSS region transcription start site region 15223
Tssr10212 1 172500241 to 172500248 7 + TSS region transcription start site region 10212
Tagln2 1 172500246 to 172507375 7129 + protein coding gene transgelin 2
Tssr10213 1 172500253 to 172500255 2 + TSS region transcription start site region 10213
Tssr10214 1 172500265 to 172500288 23 + TSS region transcription start site region 10214
Tssr15224 1 172500694 to 172500703 9 - TSS region transcription start site region 15224
Tssr10215 1 172501202 to 172501239 37 + TSS region transcription start site region 10215
Tssr10216 1 172501240 to 172501257 17 + TSS region transcription start site region 10216
Tssr15225 1 172501615 to 172501617 2 - TSS region transcription start site region 15225
Tssr10217 1 172501944 to 172501989 45 + TSS region transcription start site region 10217
Tssr10218 1 172502580 to 172502592 12 + TSS region transcription start site region 10218
Tssr10219 1 172505263 to 172505300 37 + TSS region transcription start site region 10219
Tssr10220 1 172505751 to 172505771 20 + TSS region transcription start site region 10220
Tssr10221 1 172505793 to 172505806 13 + TSS region transcription start site region 10221
Tssr10222 1 172505879 to 172505899 20 + TSS region transcription start site region 10222
Tssr10223 1 172506226 to 172506267 41 + TSS region transcription start site region 10223
Tssr10224 1 172506572 to 172506584 12 + TSS region transcription start site region 10224
Tssr10225 1 172506611 to 172506623 12 + TSS region transcription start site region 10225
Tssr10226 1 172506624 to 172506642 18 + TSS region transcription start site region 10226
Tssr10227 1 172506665 to 172506704 39 + TSS region transcription start site region 10227
Tssr10228 1 172506717 to 172506735 18 + TSS region transcription start site region 10228
Tssr10229 1 172506767 to 172506785 18 + TSS region transcription start site region 10229
Tssr10230 1 172506788 to 172506850 62 + TSS region transcription start site region 10230
Tssr10231 1 172506851 to 172506860 9 + TSS region transcription start site region 10231
Tssr15226 1 172506852 to 172506896 44 - TSS region transcription start site region 15226
Tssr10232 1 172506895 to 172506924 29 + TSS region transcription start site region 10232
Tssr10233 1 172506926 to 172506959 33 + TSS region transcription start site region 10233
Tssr15227 1 172506945 to 172506986 41 - TSS region transcription start site region 15227
Tssr10234 1 172506985 to 172506997 12 + TSS region transcription start site region 10234
Tssr10235 1 172513245 to 172513257 12 + TSS region transcription start site region 10235
Gm37125 1 172513249 to 172514807 1558 + lncRNA gene predicted gene, 37125
Tssr15228 1 172513933 to 172513980 47 - TSS region transcription start site region 15228
Tssr302 1 172513999 to 172514012 13 - TSS region transcription start site region 302
Tssr10236 1 172514121 to 172514147 26 + TSS region transcription start site region 10236
Cpgi1054 1 172520963 to 172521301 338 CpG island CpG island 1054
Tssr10237 1 172521106 to 172521150 44 + TSS region transcription start site region 10237
Cfap45 1 172521130 to 172545870 24740 + protein coding gene cilia and flagella associated protein 45
Tssr15229 1 172522671 to 172522682 11 - TSS region transcription start site region 15229
Tssr15230 1 172526374 to 172526382 8 - TSS region transcription start site region 15230
Cpgi1055 1 172526746 to 172527016 270 CpG island CpG island 1055
Tssr15231 1 172526832 to 172526834 2 - TSS region transcription start site region 15231
Cpgi1056 1 172532445 to 172532849 404 CpG island CpG island 1056
4933439K11Rik 1 172541620 to 172550806 9186 - lncRNA gene RIKEN cDNA 4933439K11 gene
Cpgi1057 1 172544961 to 172545418 457 CpG island CpG island 1057
Tssr10238 1 172548730 to 172548763 33 + TSS region transcription start site region 10238
Tssr15232 1 172550652 to 172550717 65 - TSS region transcription start site region 15232
Tssr10239 1 172550744 to 172550769 25 + TSS region transcription start site region 10239
Tssr10240 1 172555932 to 172555942 10 + TSS region transcription start site region 10240
Vsig8 1 172555938 to 172563717 7779 + protein coding gene V-set and immunoglobulin domain containing 8
Tssr15233 1 172558123 to 172558142 19 - TSS region transcription start site region 15233
Tssr15234 1 172558147 to 172558162 15 - TSS region transcription start site region 15234
D1Mit456 1 172559415 to 172559524 109 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 456
Cpgi1058 1 172561907 to 172563640 1733 CpG island CpG island 1058
Tssr10241 1 172579305 to 172579308 3 + TSS region transcription start site region 10241
Slamf8 1 172581758 to 172590568 8810 - protein coding gene SLAM family member 8
Tssr15235 1 172588233 to 172588246 13 - TSS region transcription start site region 15235
Tssr15236 1 172588569 to 172588613 44 - TSS region transcription start site region 15236
Tssr10242 1 172588707 to 172588716 9 + TSS region transcription start site region 10242
Tssr10243 1 172588721 to 172588737 16 + TSS region transcription start site region 10243
Cpgi1059 1 172588786 to 172588947 161 CpG island CpG island 1059
Tssr10244 1 172588975 to 172588979 4 + TSS region transcription start site region 10244
Tssr15237 1 172590463 to 172590475 12 - TSS region transcription start site region 15237
Tssr15238 1 172590477 to 172590489 12 - TSS region transcription start site region 15238
Tssr15239 1 172590491 to 172590581 90 - TSS region transcription start site region 15239
Tssr15240 1 172590588 to 172590606 18 - TSS region transcription start site region 15240
Tssr15241 1 172590622 to 172590645 23 - TSS region transcription start site region 15241
Tssr15242 1 172590650 to 172590666 16 - TSS region transcription start site region 15242
Tssr15243 1 172590667 to 172590679 12 - TSS region transcription start site region 15243
Fcrl6 1 172596642 to 172602551 5909 - protein coding gene Fc receptor-like 6
Tssr15244 1 172602519 to 172602544 25 - TSS region transcription start site region 15244
Tssr15245 1 172602555 to 172602566 11 - TSS region transcription start site region 15245
Tssr15246 1 172602583 to 172602590 7 - TSS region transcription start site region 15246
32.MMHAP50FRC11.seq 1 172602670 to 172602843 173 DNA segment DNA segment, 32.MMHAP50FRC11.seq
Dusp23 1 172630764 to 172632962 2198 - protein coding gene dual specificity phosphatase 23
Cpgi1060 1 172632526 to 172633194 668 CpG island CpG island 1060
Tssr15247 1 172632791 to 172632809 18 - TSS region transcription start site region 15247
Tssr15248 1 172632815 to 172632869 54 - TSS region transcription start site region 15248
Tssr15249 1 172632931 to 172632943 12 - TSS region transcription start site region 15249
Tssr10245 1 172633064 to 172633075 11 + TSS region transcription start site region 10245
Gm35601 1 172633081 to 172658377 25296 + lncRNA gene predicted gene, 35601
Cpgi1061 1 172634695 to 172634970 275 CpG island CpG island 1061
Gm2710 1 172669034 to 172669636 602 - pseudogene predicted gene 2710
Gm22383 1 172684515 to 172684841 326 - unclassified non-coding RNA gene predicted gene, 22383
Tssr10246 1 172698046 to 172698063 17 + TSS region transcription start site region 10246
Nba9 1 172698056 to 172699966 1910 QTL New Zealand Black autoimmunity 9
Crp 1 172698056 to 172699966 1910 + protein coding gene C-reactive protein, pentraxin-related
Tssr10247 1 172698989 to 172699011 22 + TSS region transcription start site region 10247
Tssr10248 1 172699055 to 172699066 11 + TSS region transcription start site region 10248
D1Mit149.1 1 172699077 to 172699237 160 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 149.1
Tssr10249 1 172699079 to 172699094 15 + TSS region transcription start site region 10249
Tssr10250 1 172699134 to 172699146 12 + TSS region transcription start site region 10250
Tssr10251 1 172699190 to 172699200 10 + TSS region transcription start site region 10251
Bmd5c 1 172699229 to 172699330 101 QTL bone mineral density 5c
D1Mit149 1 172699229 to 172699330 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 149
Bmd1b 1 172699229 to 173405420 706191 QTL bone mineral density 1b
Tssr10252 1 172699256 to 172699261 5 + TSS region transcription start site region 10252
Tssr10253 1 172699305 to 172699316 11 + TSS region transcription start site region 10253
Tssr10254 1 172699370 to 172699379 9 + TSS region transcription start site region 10254
Tssr10255 1 172705911 to 172705947 36 + TSS region transcription start site region 10255
Gm38051 1 172781445 to 172781877 432 + pseudogene predicted gene, 38051
Gm19059 1 172824971 to 172827657 2686 + pseudogene predicted gene, 19059
Gm24817 1 172843534 to 172843638 104 - snRNA gene predicted gene, 24817
Tssr303 1 172856455 to 172856456 1 - TSS region transcription start site region 303
9430083B18Rik 1 172873551 to 172874413 862 + unclassified gene RIKEN cDNA 9430083B18 gene
Cafq1 1 172888654 to 172888802 148 QTL caffeine metabolism QTL 1
D1Mit356 1 172888654 to 172888802 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 356
Ssta2 1 172888654 to 172888802 148 QTL susceptibility to Salmonella typhimurium antigens 2
Tir8 1 172888654 to 172888802 148 QTL trypanosome infection response 8