Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:172252981-172503000

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp1a4 1 172223513 to 172258414 34901 - protein coding gene ATPase, Na+/K+ transporting, alpha 4 polypeptide
Tssr15196 1 172258410 to 172258438 28 - TSS region transcription start site region 15196
Tssr15197 1 172258444 to 172258453 9 - TSS region transcription start site region 15197
Atp1a2 1 172271709 to 172298064 26355 - protein coding gene ATPase, Na+/K+ transporting, alpha 2 polypeptide
Tssr15198 1 172274123 to 172274147 24 - TSS region transcription start site region 15198
Tssr15199 1 172274149 to 172274166 17 - TSS region transcription start site region 15199
Tssr15200 1 172274190 to 172274213 23 - TSS region transcription start site region 15200
Tssr15201 1 172274324 to 172274344 20 - TSS region transcription start site region 15201
Tssr15202 1 172274431 to 172274454 23 - TSS region transcription start site region 15202
Tssr15203 1 172274722 to 172274731 9 - TSS region transcription start site region 15203
Tssr15204 1 172278918 to 172278927 9 - TSS region transcription start site region 15204
Gm39704 1 172287892 to 172289294 1402 - lncRNA gene predicted gene, 39704
Tssr15205 1 172289387 to 172289398 11 - TSS region transcription start site region 15205
Tssr15206 1 172291323 to 172291354 31 - TSS region transcription start site region 15206
Tssr15207 1 172293666 to 172293677 11 - TSS region transcription start site region 15207
Tssr15208 1 172297989 to 172298008 19 - TSS region transcription start site region 15208
Cpgi1040 1 172310046 to 172310212 166 CpG island CpG island 1040
Cpgi1041 1 172311972 to 172312995 1023 CpG island CpG island 1041
Igsf8 1 172312367 to 172319843 7476 + protein coding gene immunoglobulin superfamily, member 8
Tssr10182 1 172312378 to 172312437 59 + TSS region transcription start site region 10182
Tssr15209 1 172313991 to 172314035 44 - TSS region transcription start site region 15209
Tssr298 1 172317563 to 172317581 18 + TSS region transcription start site region 298
Cpgi1042 1 172318132 to 172318607 475 CpG island CpG island 1042
Kcnj9 1 172320501 to 172329318 8817 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 9
Gm36937 1 172322994 to 172323661 667 + antisense lncRNA gene predicted gene, 36937
Cpgi1043 1 172325544 to 172326955 1411 CpG island CpG island 1043
Tssr15210 1 172326218 to 172326225 7 - TSS region transcription start site region 15210
Tssr15211 1 172326228 to 172326238 10 - TSS region transcription start site region 15211
Tssr15212 1 172326248 to 172326255 7 - TSS region transcription start site region 15212
Tssr15213 1 172329261 to 172329307 46 - TSS region transcription start site region 15213
Tssr15214 1 172329317 to 172329326 9 - TSS region transcription start site region 15214
Tssr15215 1 172335933 to 172335946 13 - TSS region transcription start site region 15215
Cpgi1044 1 172340755 to 172341502 747 CpG island CpG island 1044
Tssr10183 1 172340907 to 172340935 28 + TSS region transcription start site region 10183
Tssr15216 1 172341030 to 172341045 15 - TSS region transcription start site region 15216
Tssr10184 1 172341197 to 172341217 20 + TSS region transcription start site region 10184
Kcnj10 1 172341210 to 172374085 32875 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 10
Tssr10185 1 172341304 to 172341322 18 + TSS region transcription start site region 10185
Tssr10186 1 172341326 to 172341349 23 + TSS region transcription start site region 10186
Tssr10187 1 172341353 to 172341370 17 + TSS region transcription start site region 10187
Tssr10188 1 172341419 to 172341425 6 + TSS region transcription start site region 10188
Tssr10189 1 172343178 to 172343198 20 + TSS region transcription start site region 10189
Cpgi1045 1 172368929 to 172369456 527 CpG island CpG island 1045
Cpgi1046 1 172369784 to 172369969 185 CpG island CpG island 1046
Tssr10190 1 172370473 to 172370485 12 + TSS region transcription start site region 10190
Tssr10191 1 172370684 to 172370701 17 + TSS region transcription start site region 10191
Tssr10192 1 172370864 to 172370881 17 + TSS region transcription start site region 10192
2810449G22Rik 1 172374969 to 172376690 1721 unclassified gene RIKEN cDNA 2810449G22 gene
Cpgi1047 1 172376213 to 172377609 1396 CpG island CpG island 1047
Tssr15217 1 172376288 to 172376318 30 - TSS region transcription start site region 15217
Tssr10193 1 172376528 to 172376599 71 + TSS region transcription start site region 10193
Pigm 1 172376546 to 172384099 7553 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class M
Tssr10194 1 172376600 to 172376624 24 + TSS region transcription start site region 10194
Tssr10195 1 172376907 to 172376933 26 + TSS region transcription start site region 10195
Tssr15218 1 172377981 to 172378000 19 - TSS region transcription start site region 15218
Gm37145 1 172388234 to 172390989 2755 - unclassified gene predicted gene, 37145
Cpgi1048 1 172392160 to 172392410 250 CpG island CpG island 1048
Tssr299 1 172428899 to 172428914 15 + TSS region transcription start site region 299
Tssr300 1 172430949 to 172430956 7 + TSS region transcription start site region 300
Tssr10196 1 172431010 to 172431021 11 + TSS region transcription start site region 10196
Tssr10197 1 172435299 to 172435312 13 + TSS region transcription start site region 10197
Cpgi1049 1 172451123 to 172451275 152 CpG island CpG island 1049
Gm7804 1 172474023 to 172474814 791 + pseudogene predicted gene 7804
Tssr15219 1 172475165 to 172475200 35 - TSS region transcription start site region 15219
Slamf9 1 172475358 to 172478575 3217 + protein coding gene SLAM family member 9
Tssr10198 1 172475371 to 172475384 13 + TSS region transcription start site region 10198
Tssr10199 1 172475387 to 172475412 25 + TSS region transcription start site region 10199
Tssr10200 1 172475427 to 172475434 7 + TSS region transcription start site region 10200
Gm35522 1 172479501 to 172481663 2162 - lncRNA gene predicted gene, 35522
Cpgi1050 1 172481760 to 172482342 582 CpG island CpG island 1050
Tssr10201 1 172481765 to 172481792 27 + TSS region transcription start site region 10201
Igsf9 1 172481788 to 172498878 17090 + protein coding gene immunoglobulin superfamily, member 9
Tssr10202 1 172481800 to 172481819 19 + TSS region transcription start site region 10202
Tssr10203 1 172481902 to 172481907 5 + TSS region transcription start site region 10203
Tssr15220 1 172482060 to 172482068 8 - TSS region transcription start site region 15220
Tssr15221 1 172482118 to 172482131 13 - TSS region transcription start site region 15221
Tssr10204 1 172482212 to 172482231 19 + TSS region transcription start site region 10204
Tssr301 1 172484270 to 172484274 4 + TSS region transcription start site region 301
Cpgi1051 1 172490513 to 172490705 192 CpG island CpG island 1051
Tssr10205 1 172492180 to 172492192 12 + TSS region transcription start site region 10205
Cpgi1052 1 172495992 to 172496364 372 CpG island CpG island 1052
Tssr15222 1 172496126 to 172496135 9 - TSS region transcription start site region 15222
Tssr10206 1 172496273 to 172496293 20 + TSS region transcription start site region 10206
Tssr10207 1 172499858 to 172499869 11 + TSS region transcription start site region 10207
Tssr10208 1 172499887 to 172499912 25 + TSS region transcription start site region 10208
Tssr10209 1 172499916 to 172499932 16 + TSS region transcription start site region 10209
Tssr10210 1 172499948 to 172499979 31 + TSS region transcription start site region 10210
Tssr10211 1 172500002 to 172500013 11 + TSS region transcription start site region 10211
Cpgi1053 1 172500011 to 172501146 1135 CpG island CpG island 1053
Tssr15223 1 172500157 to 172500162 5 - TSS region transcription start site region 15223
Tssr10212 1 172500241 to 172500248 7 + TSS region transcription start site region 10212
Tagln2 1 172500246 to 172507375 7129 + protein coding gene transgelin 2
Tssr10213 1 172500253 to 172500255 2 + TSS region transcription start site region 10213
Tssr10214 1 172500265 to 172500288 23 + TSS region transcription start site region 10214
Tssr15224 1 172500694 to 172500703 9 - TSS region transcription start site region 15224
Tssr10215 1 172501202 to 172501239 37 + TSS region transcription start site region 10215
Tssr10216 1 172501240 to 172501257 17 + TSS region transcription start site region 10216
Tssr15225 1 172501615 to 172501617 2 - TSS region transcription start site region 15225
Tssr10217 1 172501944 to 172501989 45 + TSS region transcription start site region 10217
Tssr10218 1 172502580 to 172502592 12 + TSS region transcription start site region 10218