Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:172216323-172366354

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Casq1 1 172209894 to 172219868 9974 - protein coding gene calsequestrin 1
Tssr15184 1 172216826 to 172216839 13 - TSS region transcription start site region 15184
Tssr15185 1 172217935 to 172217948 13 - TSS region transcription start site region 15185
Tssr15186 1 172218315 to 172218324 9 - TSS region transcription start site region 15186
Tssr15187 1 172219462 to 172219498 36 - TSS region transcription start site region 15187
Tssr10180 1 172219483 to 172219497 14 + TSS region transcription start site region 10180
Tssr10181 1 172219516 to 172219528 12 + TSS region transcription start site region 10181
Tssr15188 1 172219527 to 172219532 5 - TSS region transcription start site region 15188
Tssr15189 1 172219583 to 172219589 6 - TSS region transcription start site region 15189
Tssr15190 1 172219832 to 172219876 44 - TSS region transcription start site region 15190
Tssr15191 1 172219890 to 172219901 11 - TSS region transcription start site region 15191
Tssr15192 1 172220024 to 172220102 78 - TSS region transcription start site region 15192
Tssr15193 1 172220464 to 172220471 7 - TSS region transcription start site region 15193
Atp1a4 1 172223513 to 172258414 34901 - protein coding gene ATPase, Na+/K+ transporting, alpha 4 polypeptide
Gm4816 1 172226239 to 172227300 1061 + pseudogene predicted gene 4816
D1Sta3 1 172233177 to 172233247 70 DNA segment DNA segment, Chr 1, Philip Stanier 3
Tssr15194 1 172234623 to 172234632 9 - TSS region transcription start site region 15194
Tssr15195 1 172234635 to 172234655 20 - TSS region transcription start site region 15195
Gm37950 1 172237291 to 172238290 999 + antisense lncRNA gene predicted gene, 37950
Cpgi1039 1 172244676 to 172245101 425 CpG island CpG island 1039
Tssr15196 1 172258410 to 172258438 28 - TSS region transcription start site region 15196
Tssr15197 1 172258444 to 172258453 9 - TSS region transcription start site region 15197
Atp1a2 1 172271709 to 172298064 26355 - protein coding gene ATPase, Na+/K+ transporting, alpha 2 polypeptide
Tssr15198 1 172274123 to 172274147 24 - TSS region transcription start site region 15198
Tssr15199 1 172274149 to 172274166 17 - TSS region transcription start site region 15199
Tssr15200 1 172274190 to 172274213 23 - TSS region transcription start site region 15200
Tssr15201 1 172274324 to 172274344 20 - TSS region transcription start site region 15201
Tssr15202 1 172274431 to 172274454 23 - TSS region transcription start site region 15202
Tssr15203 1 172274722 to 172274731 9 - TSS region transcription start site region 15203
Tssr15204 1 172278918 to 172278927 9 - TSS region transcription start site region 15204
Gm39704 1 172287892 to 172289294 1402 - lncRNA gene predicted gene, 39704
Tssr15205 1 172289387 to 172289398 11 - TSS region transcription start site region 15205
Tssr15206 1 172291323 to 172291354 31 - TSS region transcription start site region 15206
Tssr15207 1 172293666 to 172293677 11 - TSS region transcription start site region 15207
Tssr15208 1 172297989 to 172298008 19 - TSS region transcription start site region 15208
Cpgi1040 1 172310046 to 172310212 166 CpG island CpG island 1040
Cpgi1041 1 172311972 to 172312995 1023 CpG island CpG island 1041
Igsf8 1 172312367 to 172319843 7476 + protein coding gene immunoglobulin superfamily, member 8
Tssr10182 1 172312378 to 172312437 59 + TSS region transcription start site region 10182
Tssr15209 1 172313991 to 172314035 44 - TSS region transcription start site region 15209
Tssr298 1 172317563 to 172317581 18 + TSS region transcription start site region 298
Cpgi1042 1 172318132 to 172318607 475 CpG island CpG island 1042
Kcnj9 1 172320501 to 172329318 8817 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 9
Gm36937 1 172322994 to 172323661 667 + antisense lncRNA gene predicted gene, 36937
Cpgi1043 1 172325544 to 172326955 1411 CpG island CpG island 1043
Tssr15210 1 172326218 to 172326225 7 - TSS region transcription start site region 15210
Tssr15211 1 172326228 to 172326238 10 - TSS region transcription start site region 15211
Tssr15212 1 172326248 to 172326255 7 - TSS region transcription start site region 15212
Tssr15213 1 172329261 to 172329307 46 - TSS region transcription start site region 15213
Tssr15214 1 172329317 to 172329326 9 - TSS region transcription start site region 15214
Tssr15215 1 172335933 to 172335946 13 - TSS region transcription start site region 15215
Cpgi1044 1 172340755 to 172341502 747 CpG island CpG island 1044
Tssr10183 1 172340907 to 172340935 28 + TSS region transcription start site region 10183
Tssr15216 1 172341030 to 172341045 15 - TSS region transcription start site region 15216
Tssr10184 1 172341197 to 172341217 20 + TSS region transcription start site region 10184
Kcnj10 1 172341210 to 172374085 32875 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 10
Tssr10185 1 172341304 to 172341322 18 + TSS region transcription start site region 10185
Tssr10186 1 172341326 to 172341349 23 + TSS region transcription start site region 10186
Tssr10187 1 172341353 to 172341370 17 + TSS region transcription start site region 10187
Tssr10188 1 172341419 to 172341425 6 + TSS region transcription start site region 10188
Tssr10189 1 172343178 to 172343198 20 + TSS region transcription start site region 10189