Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171939972-172811363

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318 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alcw1 1 171040785 to 172138790 1098005 QTL alcohol withdrawal 1
Slamf6 1 171917515 to 171953170 35655 + protein coding gene SLAM family member 6
Vangl2 1 172000960 to 172027314 26354 - protein coding gene VANGL planar cell polarity 2
Tssr15127 1 172004090 to 172004104 14 - TSS region transcription start site region 15127
Tssr15128 1 172004138 to 172004149 11 - TSS region transcription start site region 15128
Tssr15129 1 172004270 to 172004311 41 - TSS region transcription start site region 15129
Tssr15130 1 172004451 to 172004458 7 - TSS region transcription start site region 15130
Tssr15131 1 172004528 to 172004535 7 - TSS region transcription start site region 15131
Tssr15132 1 172004540 to 172004553 13 - TSS region transcription start site region 15132
Cpgi1031 1 172009465 to 172010071 606 CpG island CpG island 1031
Cpgi1032 1 172012999 to 172013169 170 CpG island CpG island 1032
Cpgi1033 1 172026481 to 172027568 1087 CpG island CpG island 1033
Tssr10157 1 172026857 to 172026866 9 + TSS region transcription start site region 10157
Tssr15133 1 172027251 to 172027268 17 - TSS region transcription start site region 15133
Tssr15134 1 172027269 to 172027313 44 - TSS region transcription start site region 15134
Tssr15135 1 172028964 to 172028975 11 - TSS region transcription start site region 15135
Nhlh1 1 172052292 to 172057573 5281 - protein coding gene nescient helix loop helix 1
Tssr15136 1 172052657 to 172052698 41 - TSS region transcription start site region 15136
Cpgi1034 1 172053778 to 172054342 564 CpG island CpG island 1034
Tssr15137 1 172057589 to 172057598 9 - TSS region transcription start site region 15137
Ncstn 1 172066013 to 172082749 16736 - protein coding gene nicastrin
Tssr15138 1 172066492 to 172066535 43 - TSS region transcription start site region 15138
Tssr15139 1 172066550 to 172066566 16 - TSS region transcription start site region 15139
Tssr15140 1 172066597 to 172066615 18 - TSS region transcription start site region 15140
Tssr15141 1 172066768 to 172066783 15 - TSS region transcription start site region 15141
Tssr15142 1 172067442 to 172067463 21 - TSS region transcription start site region 15142
Tssr15143 1 172067834 to 172067858 24 - TSS region transcription start site region 15143
Tssr15144 1 172068767 to 172068772 5 - TSS region transcription start site region 15144
Tssr10158 1 172082304 to 172082309 5 + TSS region transcription start site region 10158
Tssr15145 1 172082394 to 172082435 41 - TSS region transcription start site region 15145
Tssr10159 1 172082509 to 172082543 34 + TSS region transcription start site region 10159
Cpgi1035 1 172082511 to 172083227 716 CpG island CpG island 1035
Copa 1 172082529 to 172122330 39801 + protein coding gene coatomer protein complex subunit alpha
Tssr15146 1 172082678 to 172082720 42 - TSS region transcription start site region 15146
Tssr15147 1 172082757 to 172082770 13 - TSS region transcription start site region 15147
Tssr10160 1 172082780 to 172082793 13 + TSS region transcription start site region 10160
Tssr10161 1 172082796 to 172082855 59 + TSS region transcription start site region 10161
Tssr293 1 172082857 to 172082875 18 + TSS region transcription start site region 293
Tssr10162 1 172087478 to 172087481 3 + TSS region transcription start site region 10162
Gm38164 1 172088474 to 172088803 329 + pseudogene predicted gene, 38164
Gm37756 1 172089910 to 172092679 2769 - antisense lncRNA gene predicted gene, 37756
Tssr10163 1 172102099 to 172102111 12 + TSS region transcription start site region 10163
Tssr10164 1 172102132 to 172102147 15 + TSS region transcription start site region 10164
Tssr10165 1 172121720 to 172121743 23 + TSS region transcription start site region 10165
Tssr10166 1 172121744 to 172121795 51 + TSS region transcription start site region 10166
Cpgi1036 1 172126726 to 172126996 270 CpG island CpG island 1036
Tssr10167 1 172126750 to 172126779 29 + TSS region transcription start site region 10167
Pex19 1 172126755 to 172136493 9738 + protein coding gene peroxisomal biogenesis factor 19
Tssr10168 1 172135377 to 172135408 31 + TSS region transcription start site region 10168
Tssr10169 1 172136183 to 172136197 14 + TSS region transcription start site region 10169
Gm10171 1 172144274 to 172144901 627 - pseudogene predicted gene 10171
Cpgi1037 1 172147837 to 172148905 1068 CpG island CpG island 1037
Tssr15148 1 172147923 to 172147965 42 - TSS region transcription start site region 15148
Dcaf8 1 172148015 to 172196393 48378 + protein coding gene DDB1 and CUL4 associated factor 8
Tssr10170 1 172148037 to 172148048 11 + TSS region transcription start site region 10170
Tssr10171 1 172148058 to 172148094 36 + TSS region transcription start site region 10171
Tssr10172 1 172148098 to 172148103 5 + TSS region transcription start site region 10172
Tssr10173 1 172148110 to 172148176 66 + TSS region transcription start site region 10173
Tssr10174 1 172157532 to 172157534 2 + TSS region transcription start site region 10174
Tssr10175 1 172165523 to 172165532 9 + TSS region transcription start site region 10175
Edlmmq1 1 172175373 to 172175373 0 QTL extensor digitorum longus muscle mass QTL 1
Gmmq1 1 172175373 to 172175373 0 QTL gastrocnemius muscle mass QTL 1
Tammq1 1 172175373 to 172175373 0 QTL tibialis anterior muscle mass QTL 1
8430437O03Rik 1 172184426 to 172185732 1306 unclassified gene RIKEN cDNA 8430437O03 gene
Pea15a 1 172196728 to 172206781 10053 - protein coding gene phosphoprotein enriched in astrocytes 15A
Tssr15149 1 172197751 to 172197764 13 - TSS region transcription start site region 15149
Tssr15150 1 172197845 to 172197874 29 - TSS region transcription start site region 15150
Tssr15151 1 172197888 to 172197911 23 - TSS region transcription start site region 15151
Tssr15152 1 172198047 to 172198061 14 - TSS region transcription start site region 15152
Tssr15153 1 172198063 to 172198079 16 - TSS region transcription start site region 15153
Tssr15154 1 172198174 to 172198202 28 - TSS region transcription start site region 15154
Tssr10176 1 172198219 to 172198236 17 + TSS region transcription start site region 10176
Tssr15155 1 172198333 to 172198343 10 - TSS region transcription start site region 15155
Tssr15156 1 172198505 to 172198516 11 - TSS region transcription start site region 15156
Tssr15157 1 172198541 to 172198559 18 - TSS region transcription start site region 15157
Tssr10177 1 172198607 to 172198625 18 + TSS region transcription start site region 10177
Tssr10178 1 172198654 to 172198671 17 + TSS region transcription start site region 10178
Tssr15158 1 172199142 to 172199168 26 - TSS region transcription start site region 15158
Tssr15159 1 172199194 to 172199207 13 - TSS region transcription start site region 15159
Tssr15160 1 172199222 to 172199249 27 - TSS region transcription start site region 15160
Tssr15161 1 172200484 to 172200502 18 - TSS region transcription start site region 15161
Tssr15162 1 172200541 to 172200555 14 - TSS region transcription start site region 15162
Tssr15163 1 172200557 to 172200589 32 - TSS region transcription start site region 15163
Cpgi1038 1 172206208 to 172206953 745 CpG island CpG island 1038
Tssr294 1 172206628 to 172206633 5 - TSS region transcription start site region 294
Tssr15164 1 172206654 to 172206665 11 - TSS region transcription start site region 15164
Tssr295 1 172206680 to 172206683 3 - TSS region transcription start site region 295
Tssr15165 1 172206684 to 172206755 71 - TSS region transcription start site region 15165
Tssr296 1 172206756 to 172206759 3 - TSS region transcription start site region 296
Tssr15166 1 172206775 to 172206786 11 - TSS region transcription start site region 15166
Tssr297 1 172206787 to 172206793 6 - TSS region transcription start site region 297
Tssr15167 1 172207701 to 172207706 5 - TSS region transcription start site region 15167
Casq1 1 172209894 to 172219868 9974 - protein coding gene calsequestrin 1
Tssr15168 1 172210106 to 172210126 20 - TSS region transcription start site region 15168
Tssr15169 1 172210193 to 172210204 11 - TSS region transcription start site region 15169
Tssr15170 1 172210220 to 172210226 6 - TSS region transcription start site region 15170
Tssr15171 1 172210234 to 172210244 10 - TSS region transcription start site region 15171
Tssr15172 1 172210316 to 172210325 9 - TSS region transcription start site region 15172
Tssr10179 1 172210323 to 172210345 22 + TSS region transcription start site region 10179
Tssr15173 1 172210408 to 172210419 11 - TSS region transcription start site region 15173
Tssr15174 1 172210460 to 172210473 13 - TSS region transcription start site region 15174
Tssr15175 1 172211983 to 172212022 39 - TSS region transcription start site region 15175
Gm17224 1 172213021 to 172213680 659 + antisense lncRNA gene predicted gene 17224
Tssr15176 1 172213064 to 172213075 11 - TSS region transcription start site region 15176
Tssr15177 1 172213118 to 172213129 11 - TSS region transcription start site region 15177
Tssr15178 1 172213142 to 172213162 20 - TSS region transcription start site region 15178
Tssr15179 1 172213164 to 172213178 14 - TSS region transcription start site region 15179
Tssr15180 1 172213369 to 172213398 29 - TSS region transcription start site region 15180
Tssr15181 1 172213945 to 172213961 16 - TSS region transcription start site region 15181
Tssr15182 1 172215040 to 172215045 5 - TSS region transcription start site region 15182
Tssr15183 1 172215981 to 172215989 8 - TSS region transcription start site region 15183
Tssr15184 1 172216826 to 172216839 13 - TSS region transcription start site region 15184
Tssr15185 1 172217935 to 172217948 13 - TSS region transcription start site region 15185
Tssr15186 1 172218315 to 172218324 9 - TSS region transcription start site region 15186
Tssr15187 1 172219462 to 172219498 36 - TSS region transcription start site region 15187
Tssr10180 1 172219483 to 172219497 14 + TSS region transcription start site region 10180
Tssr10181 1 172219516 to 172219528 12 + TSS region transcription start site region 10181
Tssr15188 1 172219527 to 172219532 5 - TSS region transcription start site region 15188
Tssr15189 1 172219583 to 172219589 6 - TSS region transcription start site region 15189
Tssr15190 1 172219832 to 172219876 44 - TSS region transcription start site region 15190
Tssr15191 1 172219890 to 172219901 11 - TSS region transcription start site region 15191
Tssr15192 1 172220024 to 172220102 78 - TSS region transcription start site region 15192
Tssr15193 1 172220464 to 172220471 7 - TSS region transcription start site region 15193
Atp1a4 1 172223513 to 172258414 34901 - protein coding gene ATPase, Na+/K+ transporting, alpha 4 polypeptide
Gm4816 1 172226239 to 172227300 1061 + pseudogene predicted gene 4816
D1Sta3 1 172233177 to 172233247 70 DNA segment DNA segment, Chr 1, Philip Stanier 3
Tssr15194 1 172234623 to 172234632 9 - TSS region transcription start site region 15194
Tssr15195 1 172234635 to 172234655 20 - TSS region transcription start site region 15195
Gm37950 1 172237291 to 172238290 999 + antisense lncRNA gene predicted gene, 37950
Cpgi1039 1 172244676 to 172245101 425 CpG island CpG island 1039
Tssr15196 1 172258410 to 172258438 28 - TSS region transcription start site region 15196
Tssr15197 1 172258444 to 172258453 9 - TSS region transcription start site region 15197
Atp1a2 1 172271709 to 172298064 26355 - protein coding gene ATPase, Na+/K+ transporting, alpha 2 polypeptide
Tssr15198 1 172274123 to 172274147 24 - TSS region transcription start site region 15198
Tssr15199 1 172274149 to 172274166 17 - TSS region transcription start site region 15199
Tssr15200 1 172274190 to 172274213 23 - TSS region transcription start site region 15200
Tssr15201 1 172274324 to 172274344 20 - TSS region transcription start site region 15201
Tssr15202 1 172274431 to 172274454 23 - TSS region transcription start site region 15202
Tssr15203 1 172274722 to 172274731 9 - TSS region transcription start site region 15203
Tssr15204 1 172278918 to 172278927 9 - TSS region transcription start site region 15204
Gm39704 1 172287892 to 172289294 1402 - lncRNA gene predicted gene, 39704
Tssr15205 1 172289387 to 172289398 11 - TSS region transcription start site region 15205
Tssr15206 1 172291323 to 172291354 31 - TSS region transcription start site region 15206
Tssr15207 1 172293666 to 172293677 11 - TSS region transcription start site region 15207
Tssr15208 1 172297989 to 172298008 19 - TSS region transcription start site region 15208
Cpgi1040 1 172310046 to 172310212 166 CpG island CpG island 1040
Cpgi1041 1 172311972 to 172312995 1023 CpG island CpG island 1041
Igsf8 1 172312367 to 172319843 7476 + protein coding gene immunoglobulin superfamily, member 8
Tssr10182 1 172312378 to 172312437 59 + TSS region transcription start site region 10182
Tssr15209 1 172313991 to 172314035 44 - TSS region transcription start site region 15209
Tssr298 1 172317563 to 172317581 18 + TSS region transcription start site region 298
Cpgi1042 1 172318132 to 172318607 475 CpG island CpG island 1042
Kcnj9 1 172320501 to 172329318 8817 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 9
Gm36937 1 172322994 to 172323661 667 + antisense lncRNA gene predicted gene, 36937
Cpgi1043 1 172325544 to 172326955 1411 CpG island CpG island 1043
Tssr15210 1 172326218 to 172326225 7 - TSS region transcription start site region 15210
Tssr15211 1 172326228 to 172326238 10 - TSS region transcription start site region 15211
Tssr15212 1 172326248 to 172326255 7 - TSS region transcription start site region 15212
Tssr15213 1 172329261 to 172329307 46 - TSS region transcription start site region 15213
Tssr15214 1 172329317 to 172329326 9 - TSS region transcription start site region 15214
Tssr15215 1 172335933 to 172335946 13 - TSS region transcription start site region 15215
Cpgi1044 1 172340755 to 172341502 747 CpG island CpG island 1044
Tssr10183 1 172340907 to 172340935 28 + TSS region transcription start site region 10183
Tssr15216 1 172341030 to 172341045 15 - TSS region transcription start site region 15216
Tssr10184 1 172341197 to 172341217 20 + TSS region transcription start site region 10184
Kcnj10 1 172341210 to 172374085 32875 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 10
Tssr10185 1 172341304 to 172341322 18 + TSS region transcription start site region 10185
Tssr10186 1 172341326 to 172341349 23 + TSS region transcription start site region 10186
Tssr10187 1 172341353 to 172341370 17 + TSS region transcription start site region 10187
Tssr10188 1 172341419 to 172341425 6 + TSS region transcription start site region 10188
Tssr10189 1 172343178 to 172343198 20 + TSS region transcription start site region 10189
Cpgi1045 1 172368929 to 172369456 527 CpG island CpG island 1045
Cpgi1046 1 172369784 to 172369969 185 CpG island CpG island 1046
Tssr10190 1 172370473 to 172370485 12 + TSS region transcription start site region 10190
Tssr10191 1 172370684 to 172370701 17 + TSS region transcription start site region 10191
Tssr10192 1 172370864 to 172370881 17 + TSS region transcription start site region 10192
2810449G22Rik 1 172374969 to 172376690 1721 unclassified gene RIKEN cDNA 2810449G22 gene
Cpgi1047 1 172376213 to 172377609 1396 CpG island CpG island 1047
Tssr15217 1 172376288 to 172376318 30 - TSS region transcription start site region 15217
Tssr10193 1 172376528 to 172376599 71 + TSS region transcription start site region 10193
Pigm 1 172376546 to 172384099 7553 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class M
Tssr10194 1 172376600 to 172376624 24 + TSS region transcription start site region 10194
Tssr10195 1 172376907 to 172376933 26 + TSS region transcription start site region 10195
Tssr15218 1 172377981 to 172378000 19 - TSS region transcription start site region 15218
Gm37145 1 172388234 to 172390989 2755 - unclassified gene predicted gene, 37145
Cpgi1048 1 172392160 to 172392410 250 CpG island CpG island 1048
Tssr299 1 172428899 to 172428914 15 + TSS region transcription start site region 299
Tssr300 1 172430949 to 172430956 7 + TSS region transcription start site region 300
Tssr10196 1 172431010 to 172431021 11 + TSS region transcription start site region 10196
Tssr10197 1 172435299 to 172435312 13 + TSS region transcription start site region 10197
Cpgi1049 1 172451123 to 172451275 152 CpG island CpG island 1049
Gm7804 1 172474023 to 172474814 791 + pseudogene predicted gene 7804
Tssr15219 1 172475165 to 172475200 35 - TSS region transcription start site region 15219
Slamf9 1 172475358 to 172478575 3217 + protein coding gene SLAM family member 9
Tssr10198 1 172475371 to 172475384 13 + TSS region transcription start site region 10198
Tssr10199 1 172475387 to 172475412 25 + TSS region transcription start site region 10199
Tssr10200 1 172475427 to 172475434 7 + TSS region transcription start site region 10200
Gm35522 1 172479501 to 172481663 2162 - lncRNA gene predicted gene, 35522
Cpgi1050 1 172481760 to 172482342 582 CpG island CpG island 1050
Tssr10201 1 172481765 to 172481792 27 + TSS region transcription start site region 10201