Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171920960-172107314

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
Slamf6 1 171917515 to 171953170 35655 + protein coding gene SLAM family member 6
Tssr10156 1 171927993 to 171927996 3 + TSS region transcription start site region 10156
Vangl2 1 172000960 to 172027314 26354 - protein coding gene VANGL planar cell polarity 2
Tssr15127 1 172004090 to 172004104 14 - TSS region transcription start site region 15127
Tssr15128 1 172004138 to 172004149 11 - TSS region transcription start site region 15128
Tssr15129 1 172004270 to 172004311 41 - TSS region transcription start site region 15129
Tssr15130 1 172004451 to 172004458 7 - TSS region transcription start site region 15130
Tssr15131 1 172004528 to 172004535 7 - TSS region transcription start site region 15131
Tssr15132 1 172004540 to 172004553 13 - TSS region transcription start site region 15132
Cpgi1031 1 172009465 to 172010071 606 CpG island CpG island 1031
Cpgi1032 1 172012999 to 172013169 170 CpG island CpG island 1032
Cpgi1033 1 172026481 to 172027568 1087 CpG island CpG island 1033
Tssr10157 1 172026857 to 172026866 9 + TSS region transcription start site region 10157
Tssr15133 1 172027251 to 172027268 17 - TSS region transcription start site region 15133
Tssr15134 1 172027269 to 172027313 44 - TSS region transcription start site region 15134
Tssr15135 1 172028964 to 172028975 11 - TSS region transcription start site region 15135
Nhlh1 1 172052292 to 172057573 5281 - protein coding gene nescient helix loop helix 1
Tssr15136 1 172052657 to 172052698 41 - TSS region transcription start site region 15136
Cpgi1034 1 172053778 to 172054342 564 CpG island CpG island 1034
Tssr15137 1 172057589 to 172057598 9 - TSS region transcription start site region 15137
Ncstn 1 172066013 to 172082749 16736 - protein coding gene nicastrin
Tssr15138 1 172066492 to 172066535 43 - TSS region transcription start site region 15138
Tssr15139 1 172066550 to 172066566 16 - TSS region transcription start site region 15139
Tssr15140 1 172066597 to 172066615 18 - TSS region transcription start site region 15140
Tssr15141 1 172066768 to 172066783 15 - TSS region transcription start site region 15141
Tssr15142 1 172067442 to 172067463 21 - TSS region transcription start site region 15142
Tssr15143 1 172067834 to 172067858 24 - TSS region transcription start site region 15143
Tssr15144 1 172068767 to 172068772 5 - TSS region transcription start site region 15144
Tssr10158 1 172082304 to 172082309 5 + TSS region transcription start site region 10158
Tssr15145 1 172082394 to 172082435 41 - TSS region transcription start site region 15145
Tssr10159 1 172082509 to 172082543 34 + TSS region transcription start site region 10159
Cpgi1035 1 172082511 to 172083227 716 CpG island CpG island 1035
Copa 1 172082529 to 172122330 39801 + protein coding gene coatomer protein complex subunit alpha
Tssr15146 1 172082678 to 172082720 42 - TSS region transcription start site region 15146
Tssr15147 1 172082757 to 172082770 13 - TSS region transcription start site region 15147
Tssr10160 1 172082780 to 172082793 13 + TSS region transcription start site region 10160
Tssr10161 1 172082796 to 172082855 59 + TSS region transcription start site region 10161
Tssr293 1 172082857 to 172082875 18 + TSS region transcription start site region 293
Tssr10162 1 172087478 to 172087481 3 + TSS region transcription start site region 10162
Gm38164 1 172088474 to 172088803 329 + pseudogene predicted gene, 38164
Gm37756 1 172089910 to 172092679 2769 - antisense lncRNA gene predicted gene, 37756
Tssr10163 1 172102099 to 172102111 12 + TSS region transcription start site region 10163
Tssr10164 1 172102132 to 172102147 15 + TSS region transcription start site region 10164