Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171855960-172172314

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
Alcw1 1 171040785 to 172138790 1098005 QTL alcohol withdrawal 1
Cd84 1 171839697 to 171890718 51021 + protein coding gene CD84 antigen
Tssr10131 1 171856078 to 171856089 11 + TSS region transcription start site region 10131
Tssr10132 1 171856134 to 171856171 37 + TSS region transcription start site region 10132
Tssr10133 1 171856514 to 171856530 16 + TSS region transcription start site region 10133
Tssr10134 1 171856616 to 171856627 11 + TSS region transcription start site region 10134
Tssr10135 1 171856650 to 171856671 21 + TSS region transcription start site region 10135
Tssr10136 1 171856748 to 171856759 11 + TSS region transcription start site region 10136
Tssr10137 1 171856837 to 171856887 50 + TSS region transcription start site region 10137
Tssr10138 1 171856916 to 171856940 24 + TSS region transcription start site region 10138
Tssr10139 1 171856989 to 171857026 37 + TSS region transcription start site region 10139
Tssr10140 1 171857096 to 171857111 15 + TSS region transcription start site region 10140
Tssr10141 1 171864383 to 171864411 28 + TSS region transcription start site region 10141
Tssr10142 1 171864591 to 171864611 20 + TSS region transcription start site region 10142
Tssr10143 1 171868809 to 171868833 24 + TSS region transcription start site region 10143
Gm10521 1 171895664 to 171898237 2573 + protein coding gene predicted gene 10521
Tssr10144 1 171896584 to 171896602 18 + TSS region transcription start site region 10144
Tssr10145 1 171896920 to 171896943 23 + TSS region transcription start site region 10145
Tssr10146 1 171899025 to 171899048 23 + TSS region transcription start site region 10146
Tssr10147 1 171907319 to 171907344 25 + TSS region transcription start site region 10147
Gm37065 1 171913532 to 171919586 6054 - antisense lncRNA gene predicted gene, 37065
Tssr10148 1 171917438 to 171917472 34 + TSS region transcription start site region 10148
Tssr10149 1 171917489 to 171917503 14 + TSS region transcription start site region 10149
Tssr10150 1 171917512 to 171917517 5 + TSS region transcription start site region 10150
Slamf6 1 171917515 to 171953170 35655 + protein coding gene SLAM family member 6
Tssr10151 1 171917668 to 171917708 40 + TSS region transcription start site region 10151
Tssr10152 1 171917724 to 171917731 7 + TSS region transcription start site region 10152
Tssr10153 1 171917876 to 171917883 7 + TSS region transcription start site region 10153
Tssr15125 1 171919315 to 171919326 11 - TSS region transcription start site region 15125
Tssr15126 1 171919345 to 171919372 27 - TSS region transcription start site region 15126
Tssr10154 1 171919433 to 171919441 8 + TSS region transcription start site region 10154
Tssr10155 1 171919480 to 171919495 15 + TSS region transcription start site region 10155
Tssr10156 1 171927993 to 171927996 3 + TSS region transcription start site region 10156
Vangl2 1 172000960 to 172027314 26354 - protein coding gene VANGL planar cell polarity 2
Tssr15127 1 172004090 to 172004104 14 - TSS region transcription start site region 15127
Tssr15128 1 172004138 to 172004149 11 - TSS region transcription start site region 15128
Tssr15129 1 172004270 to 172004311 41 - TSS region transcription start site region 15129
Tssr15130 1 172004451 to 172004458 7 - TSS region transcription start site region 15130
Tssr15131 1 172004528 to 172004535 7 - TSS region transcription start site region 15131
Tssr15132 1 172004540 to 172004553 13 - TSS region transcription start site region 15132
Cpgi1031 1 172009465 to 172010071 606 CpG island CpG island 1031
Cpgi1032 1 172012999 to 172013169 170 CpG island CpG island 1032
Cpgi1033 1 172026481 to 172027568 1087 CpG island CpG island 1033
Tssr10157 1 172026857 to 172026866 9 + TSS region transcription start site region 10157
Tssr15133 1 172027251 to 172027268 17 - TSS region transcription start site region 15133
Tssr15134 1 172027269 to 172027313 44 - TSS region transcription start site region 15134
Tssr15135 1 172028964 to 172028975 11 - TSS region transcription start site region 15135
Nhlh1 1 172052292 to 172057573 5281 - protein coding gene nescient helix loop helix 1
Tssr15136 1 172052657 to 172052698 41 - TSS region transcription start site region 15136
Cpgi1034 1 172053778 to 172054342 564 CpG island CpG island 1034
Tssr15137 1 172057589 to 172057598 9 - TSS region transcription start site region 15137
Ncstn 1 172066013 to 172082749 16736 - protein coding gene nicastrin
Tssr15138 1 172066492 to 172066535 43 - TSS region transcription start site region 15138
Tssr15139 1 172066550 to 172066566 16 - TSS region transcription start site region 15139
Tssr15140 1 172066597 to 172066615 18 - TSS region transcription start site region 15140
Tssr15141 1 172066768 to 172066783 15 - TSS region transcription start site region 15141
Tssr15142 1 172067442 to 172067463 21 - TSS region transcription start site region 15142
Tssr15143 1 172067834 to 172067858 24 - TSS region transcription start site region 15143
Tssr15144 1 172068767 to 172068772 5 - TSS region transcription start site region 15144
Tssr10158 1 172082304 to 172082309 5 + TSS region transcription start site region 10158
Tssr15145 1 172082394 to 172082435 41 - TSS region transcription start site region 15145
Tssr10159 1 172082509 to 172082543 34 + TSS region transcription start site region 10159
Cpgi1035 1 172082511 to 172083227 716 CpG island CpG island 1035
Copa 1 172082529 to 172122330 39801 + protein coding gene coatomer protein complex subunit alpha
Tssr15146 1 172082678 to 172082720 42 - TSS region transcription start site region 15146
Tssr15147 1 172082757 to 172082770 13 - TSS region transcription start site region 15147
Tssr10160 1 172082780 to 172082793 13 + TSS region transcription start site region 10160
Tssr10161 1 172082796 to 172082855 59 + TSS region transcription start site region 10161
Tssr293 1 172082857 to 172082875 18 + TSS region transcription start site region 293
Tssr10162 1 172087478 to 172087481 3 + TSS region transcription start site region 10162
Gm38164 1 172088474 to 172088803 329 + pseudogene predicted gene, 38164
Gm37756 1 172089910 to 172092679 2769 - antisense lncRNA gene predicted gene, 37756
Tssr10163 1 172102099 to 172102111 12 + TSS region transcription start site region 10163
Tssr10164 1 172102132 to 172102147 15 + TSS region transcription start site region 10164
Tssr10165 1 172121720 to 172121743 23 + TSS region transcription start site region 10165
Tssr10166 1 172121744 to 172121795 51 + TSS region transcription start site region 10166
Cpgi1036 1 172126726 to 172126996 270 CpG island CpG island 1036
Tssr10167 1 172126750 to 172126779 29 + TSS region transcription start site region 10167
Pex19 1 172126755 to 172136493 9738 + protein coding gene peroxisomal biogenesis factor 19
Tssr10168 1 172135377 to 172135408 31 + TSS region transcription start site region 10168
Tssr10169 1 172136183 to 172136197 14 + TSS region transcription start site region 10169
Gm10171 1 172144274 to 172144901 627 - pseudogene predicted gene 10171
Cpgi1037 1 172147837 to 172148905 1068 CpG island CpG island 1037
Tssr15148 1 172147923 to 172147965 42 - TSS region transcription start site region 15148
Dcaf8 1 172148015 to 172196393 48378 + protein coding gene DDB1 and CUL4 associated factor 8
Tssr10170 1 172148037 to 172148048 11 + TSS region transcription start site region 10170
Tssr10171 1 172148058 to 172148094 36 + TSS region transcription start site region 10171
Tssr10172 1 172148098 to 172148103 5 + TSS region transcription start site region 10172
Tssr10173 1 172148110 to 172148176 66 + TSS region transcription start site region 10173
Tssr10174 1 172157532 to 172157534 2 + TSS region transcription start site region 10174
Tssr10175 1 172165523 to 172165532 9 + TSS region transcription start site region 10175