Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171440284-171630300

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
F11r 1 171437561 to 171464593 27032 + protein coding gene F11 receptor
Tssr10057 1 171458105 to 171458119 14 + TSS region transcription start site region 10057
Tssr10058 1 171458333 to 171458359 26 + TSS region transcription start site region 10058
Tssr10059 1 171466009 to 171466016 7 + TSS region transcription start site region 10059
B930036N10Rik 1 171500568 to 171504111 3543 - antisense lncRNA gene RIKEN cDNA B930036N10 gene
Gm24871 1 171503048 to 171503163 115 - snRNA gene predicted gene, 24871
Cpgi1029 1 171503323 to 171504355 1032 CpG island CpG island 1029
Tssr10060 1 171503410 to 171503456 46 + TSS region transcription start site region 10060
Alyref2 1 171503478 to 171504750 1272 + protein coding gene Aly/REF export factor 2
Tssr10061 1 171503625 to 171503649 24 + TSS region transcription start site region 10061
Gm9765 1 171515233 to 171516922 1689 + pseudogene predicted gene 9765
Itln1 1 171518122 to 171535294 17172 - protein coding gene intelectin 1 (galactofuranose binding)
Tssr15046 1 171531131 to 171531148 17 - TSS region transcription start site region 15046
Tssr15047 1 171531660 to 171531688 28 - TSS region transcription start site region 15047
Tssr15048 1 171535284 to 171535300 16 - TSS region transcription start site region 15048
Gm37450 1 171541692 to 171541861 169 + pseudogene predicted gene, 37450
Gm35200 1 171553526 to 171557051 3525 - lncRNA gene predicted gene, 35200
Gm39703 1 171557872 to 171562126 4254 - lncRNA gene predicted gene, 39703
Cd244a 1 171558713 to 171585316 26603 + protein coding gene CD244 molecule A
Tssr10062 1 171558912 to 171558930 18 + TSS region transcription start site region 10062
Tssr10063 1 171559096 to 171559120 24 + TSS region transcription start site region 10063
Tssr10064 1 171559132 to 171559150 18 + TSS region transcription start site region 10064
Tssr10065 1 171559160 to 171559181 21 + TSS region transcription start site region 10065
Tssr10066 1 171559186 to 171559205 19 + TSS region transcription start site region 10066
Tssr10067 1 171559217 to 171559234 17 + TSS region transcription start site region 10067
Tssr10068 1 171559243 to 171559274 31 + TSS region transcription start site region 10068
Tssr10069 1 171559298 to 171559305 7 + TSS region transcription start site region 10069
Tssr15049 1 171562033 to 171562075 42 - TSS region transcription start site region 15049
Tssr10070 1 171580531 to 171580533 2 + TSS region transcription start site region 10070
Obq25 1 171582944 to 171582944 0 QTL obesity QTL 25
Ly9 1 171588624 to 171607410 18786 - protein coding gene lymphocyte antigen 9
Tssr15050 1 171601856 to 171601913 57 - TSS region transcription start site region 15050
Tssr15051 1 171602013 to 171602036 23 - TSS region transcription start site region 15051
Tssr15052 1 171605251 to 171605268 17 - TSS region transcription start site region 15052
Tssr15053 1 171607321 to 171607363 42 - TSS region transcription start site region 15053
Tssr15054 1 171607378 to 171607403 25 - TSS region transcription start site region 15054
Tssr10071 1 171607506 to 171607517 11 + TSS region transcription start site region 10071
Tssr15055 1 171616829 to 171616842 13 - TSS region transcription start site region 15055
Tssr10072 1 171619228 to 171619232 4 + TSS region transcription start site region 10072
Tssr10073 1 171628275 to 171628288 13 + TSS region transcription start site region 10073