Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171359526-171919567

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272 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scgq2 1 147249520 to 171804689 24555169 QTL spontaneous crescentic glomerulonephritis QTL 2
Nktcn1 1 168358674 to 171804689 3446015 QTL natural killer T cell numbers 1
Klhdc9 1 171358449 to 171360798 2349 - protein coding gene kelch domain containing 9
Cpgi1025 1 171360110 to 171361096 986 CpG island CpG island 1025
Tssr15041 1 171360726 to 171360765 39 - TSS region transcription start site region 15041
Gm37097 1 171362862 to 171363197 335 + pseudogene predicted gene, 37097
Tssr10024 1 171370052 to 171370091 39 + TSS region transcription start site region 10024
Tssr10025 1 171370092 to 171370111 19 + TSS region transcription start site region 10025
Tssr10026 1 171370113 to 171370130 17 + TSS region transcription start site region 10026
Tssr10027 1 171370160 to 171370171 11 + TSS region transcription start site region 10027
Nectin4 1 171370173 to 171388287 18114 + protein coding gene nectin cell adhesion molecule 4
Tssr10028 1 171370345 to 171370359 14 + TSS region transcription start site region 10028
Tssr10029 1 171370385 to 171370408 23 + TSS region transcription start site region 10029
Cpgi1026 1 171380023 to 171380555 532 CpG island CpG island 1026
Tssr10030 1 171380144 to 171380166 22 + TSS region transcription start site region 10030
Tssr10031 1 171383514 to 171383520 6 + TSS region transcription start site region 10031
Tssr15042 1 171388754 to 171388763 9 - TSS region transcription start site region 15042
Tssr15043 1 171388772 to 171388798 26 - TSS region transcription start site region 15043
Tssr10032 1 171388920 to 171388935 15 + TSS region transcription start site region 10032
Tssr10033 1 171388955 to 171389042 87 + TSS region transcription start site region 10033
Arhgap30 1 171388960 to 171410240 21280 + protein coding gene Rho GTPase activating protein 30
Tssr10034 1 171389068 to 171389099 31 + TSS region transcription start site region 10034
Tssr10035 1 171389100 to 171389115 15 + TSS region transcription start site region 10035
Tssr10036 1 171389130 to 171389137 7 + TSS region transcription start site region 10036
Tssr10037 1 171389146 to 171389157 11 + TSS region transcription start site region 10037
Tssr10038 1 171389181 to 171389197 16 + TSS region transcription start site region 10038
Tssr10039 1 171389211 to 171389233 22 + TSS region transcription start site region 10039
Tssr10040 1 171389240 to 171389247 7 + TSS region transcription start site region 10040
Tssr15044 1 171390178 to 171390205 27 - TSS region transcription start site region 15044
Tssr10041 1 171403197 to 171403246 49 + TSS region transcription start site region 10041
Tssr10042 1 171407902 to 171407911 9 + TSS region transcription start site region 10042
Tssr10043 1 171408017 to 171408034 17 + TSS region transcription start site region 10043
Tssr10044 1 171408113 to 171408133 20 + TSS region transcription start site region 10044
Tssr10045 1 171408160 to 171408178 18 + TSS region transcription start site region 10045
Tssr10046 1 171408179 to 171408197 18 + TSS region transcription start site region 10046
Tssr10047 1 171408210 to 171408222 12 + TSS region transcription start site region 10047
Tssr10048 1 171409615 to 171409625 10 + TSS region transcription start site region 10048
Cpgi1027 1 171411166 to 171412357 1191 CpG island CpG island 1027
Tssr10049 1 171411305 to 171411337 32 + TSS region transcription start site region 10049
Usf1 1 171411313 to 171418759 7446 + protein coding gene upstream transcription factor 1
Tssr10050 1 171411343 to 171411382 39 + TSS region transcription start site region 10050
Tssr10051 1 171418964 to 171418969 5 + TSS region transcription start site region 10051
Tssr10052 1 171419027 to 171419052 25 + TSS region transcription start site region 10052
Tstd1 1 171419033 to 171420352 1319 + protein coding gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 1
Tssr10053 1 171419060 to 171419092 32 + TSS region transcription start site region 10053
Tssr289 1 171419094 to 171419099 5 + TSS region transcription start site region 289
Gm26641 1 171423185 to 171437318 14133 - lincRNA gene predicted gene, 26641
Tssr15045 1 171437288 to 171437323 35 - TSS region transcription start site region 15045
Cpgi1028 1 171437340 to 171438146 806 CpG island CpG island 1028
Tssr10054 1 171437552 to 171437566 14 + TSS region transcription start site region 10054
F11r 1 171437561 to 171464593 27032 + protein coding gene F11 receptor
Tssr10055 1 171437568 to 171437584 16 + TSS region transcription start site region 10055
Tssr10056 1 171437594 to 171437605 11 + TSS region transcription start site region 10056
Tssr290 1 171439316 to 171439321 5 + TSS region transcription start site region 290
Tssr10057 1 171458105 to 171458119 14 + TSS region transcription start site region 10057
Tssr10058 1 171458333 to 171458359 26 + TSS region transcription start site region 10058
Tssr10059 1 171466009 to 171466016 7 + TSS region transcription start site region 10059
B930036N10Rik 1 171500568 to 171504111 3543 - antisense lncRNA gene RIKEN cDNA B930036N10 gene
Gm24871 1 171503048 to 171503163 115 - snRNA gene predicted gene, 24871
Cpgi1029 1 171503323 to 171504355 1032 CpG island CpG island 1029
Tssr10060 1 171503410 to 171503456 46 + TSS region transcription start site region 10060
Alyref2 1 171503478 to 171504750 1272 + protein coding gene Aly/REF export factor 2
Tssr10061 1 171503625 to 171503649 24 + TSS region transcription start site region 10061
Gm9765 1 171515233 to 171516922 1689 + pseudogene predicted gene 9765
Itln1 1 171518122 to 171535294 17172 - protein coding gene intelectin 1 (galactofuranose binding)
Tssr15046 1 171531131 to 171531148 17 - TSS region transcription start site region 15046
Tssr15047 1 171531660 to 171531688 28 - TSS region transcription start site region 15047
Tssr15048 1 171535284 to 171535300 16 - TSS region transcription start site region 15048
Gm37450 1 171541692 to 171541861 169 + pseudogene predicted gene, 37450
Gm35200 1 171553526 to 171557051 3525 - lncRNA gene predicted gene, 35200
Gm39703 1 171557872 to 171562126 4254 - lncRNA gene predicted gene, 39703
Cd244a 1 171558713 to 171585316 26603 + protein coding gene CD244 molecule A
Tssr10062 1 171558912 to 171558930 18 + TSS region transcription start site region 10062
Tssr10063 1 171559096 to 171559120 24 + TSS region transcription start site region 10063
Tssr10064 1 171559132 to 171559150 18 + TSS region transcription start site region 10064
Tssr10065 1 171559160 to 171559181 21 + TSS region transcription start site region 10065
Tssr10066 1 171559186 to 171559205 19 + TSS region transcription start site region 10066
Tssr10067 1 171559217 to 171559234 17 + TSS region transcription start site region 10067
Tssr10068 1 171559243 to 171559274 31 + TSS region transcription start site region 10068
Tssr10069 1 171559298 to 171559305 7 + TSS region transcription start site region 10069
Tssr15049 1 171562033 to 171562075 42 - TSS region transcription start site region 15049
Tssr10070 1 171580531 to 171580533 2 + TSS region transcription start site region 10070
Obq25 1 171582944 to 171582944 0 QTL obesity QTL 25
Ly9 1 171588624 to 171607410 18786 - protein coding gene lymphocyte antigen 9
Tssr15050 1 171601856 to 171601913 57 - TSS region transcription start site region 15050
Tssr15051 1 171602013 to 171602036 23 - TSS region transcription start site region 15051
Tssr15052 1 171605251 to 171605268 17 - TSS region transcription start site region 15052
Tssr15053 1 171607321 to 171607363 42 - TSS region transcription start site region 15053
Tssr15054 1 171607378 to 171607403 25 - TSS region transcription start site region 15054
Tssr10071 1 171607506 to 171607517 11 + TSS region transcription start site region 10071
Tssr15055 1 171616829 to 171616842 13 - TSS region transcription start site region 15055
Tssr10072 1 171619228 to 171619232 4 + TSS region transcription start site region 10072
Tssr10073 1 171628275 to 171628288 13 + TSS region transcription start site region 10073
Tssr15056 1 171630419 to 171630425 6 - TSS region transcription start site region 15056
Tssr10074 1 171630634 to 171630639 5 + TSS region transcription start site region 10074
Tssr15057 1 171632064 to 171632087 23 - TSS region transcription start site region 15057
Tssr15058 1 171632162 to 171632167 5 - TSS region transcription start site region 15058
Tssr15059 1 171632235 to 171632246 11 - TSS region transcription start site region 15059
Slamf7 1 171632403 to 171653035 20632 - protein coding gene SLAM family member 7
Tssr15060 1 171632779 to 171632798 19 - TSS region transcription start site region 15060
Tssr15061 1 171632845 to 171632856 11 - TSS region transcription start site region 15061
Tssr15062 1 171632869 to 171632879 10 - TSS region transcription start site region 15062
Tssr15063 1 171633164 to 171633180 16 - TSS region transcription start site region 15063
Tssr15064 1 171633312 to 171633331 19 - TSS region transcription start site region 15064
Tssr15065 1 171633900 to 171633905 5 - TSS region transcription start site region 15065
Tssr15066 1 171634074 to 171634084 10 - TSS region transcription start site region 15066
Tssr15067 1 171634108 to 171634119 11 - TSS region transcription start site region 15067
Tssr15068 1 171634127 to 171634141 14 - TSS region transcription start site region 15068
Tssr15069 1 171634157 to 171634164 7 - TSS region transcription start site region 15069
Tssr15070 1 171634202 to 171634218 16 - TSS region transcription start site region 15070
Tssr15071 1 171634285 to 171634311 26 - TSS region transcription start site region 15071
Tssr15072 1 171634322 to 171634343 21 - TSS region transcription start site region 15072
Tssr15073 1 171634444 to 171634455 11 - TSS region transcription start site region 15073
Tssr15074 1 171634491 to 171634509 18 - TSS region transcription start site region 15074
Tssr15075 1 171634547 to 171634558 11 - TSS region transcription start site region 15075
Tssr15076 1 171634566 to 171634589 23 - TSS region transcription start site region 15076
Tssr15077 1 171634625 to 171634638 13 - TSS region transcription start site region 15077
Tssr15078 1 171634642 to 171634653 11 - TSS region transcription start site region 15078
Tssr15079 1 171634715 to 171634732 17 - TSS region transcription start site region 15079
Tssr15080 1 171634739 to 171634764 25 - TSS region transcription start site region 15080
Tssr10075 1 171634757 to 171634769 12 + TSS region transcription start site region 10075
Tssr15081 1 171634793 to 171634823 30 - TSS region transcription start site region 15081
Tssr10076 1 171634871 to 171634906 35 + TSS region transcription start site region 10076
Gm37787 1 171634879 to 171636022 1143 + antisense lncRNA gene predicted gene, 37787
Tssr15082 1 171634914 to 171634932 18 - TSS region transcription start site region 15082
Tssr15083 1 171634943 to 171634961 18 - TSS region transcription start site region 15083
Tssr15084 1 171634965 to 171634976 11 - TSS region transcription start site region 15084
Tssr15085 1 171634979 to 171635001 22 - TSS region transcription start site region 15085
Tssr15086 1 171636340 to 171636380 40 - TSS region transcription start site region 15086
Tssr15087 1 171636666 to 171636691 25 - TSS region transcription start site region 15087
Tssr15088 1 171637179 to 171637188 9 - TSS region transcription start site region 15088
Tssr15089 1 171637241 to 171637268 27 - TSS region transcription start site region 15089
Tssr15090 1 171637323 to 171637337 14 - TSS region transcription start site region 15090
Tssr15091 1 171637346 to 171637378 32 - TSS region transcription start site region 15091
Tssr15092 1 171638717 to 171638736 19 - TSS region transcription start site region 15092
Tssr15093 1 171638747 to 171638761 14 - TSS region transcription start site region 15093
Tssr15094 1 171638765 to 171638776 11 - TSS region transcription start site region 15094
Tssr10077 1 171638991 to 171639039 48 + TSS region transcription start site region 10077
Tssr15095 1 171639017 to 171639044 27 - TSS region transcription start site region 15095
Tssr15096 1 171639060 to 171639074 14 - TSS region transcription start site region 15096
Tssr15097 1 171639166 to 171639177 11 - TSS region transcription start site region 15097
Tssr15098 1 171639247 to 171639258 11 - TSS region transcription start site region 15098
Tssr15099 1 171639526 to 171639567 41 - TSS region transcription start site region 15099
Tssr15100 1 171639628 to 171639631 3 - TSS region transcription start site region 15100
Tssr15101 1 171641020 to 171641036 16 - TSS region transcription start site region 15101
Tssr15102 1 171641059 to 171641086 27 - TSS region transcription start site region 15102
Tssr15103 1 171641114 to 171641127 13 - TSS region transcription start site region 15103
Tssr15104 1 171641155 to 171641168 13 - TSS region transcription start site region 15104
Tssr15105 1 171641173 to 171641180 7 - TSS region transcription start site region 15105
Mir7683 1 171641840 to 171641900 60 - miRNA gene microRNA 7683
Tssr15106 1 171643348 to 171643375 27 - TSS region transcription start site region 15106
Tssr15107 1 171645881 to 171645894 13 - TSS region transcription start site region 15107
Tssr15108 1 171645950 to 171645973 23 - TSS region transcription start site region 15108
Tssr15109 1 171646411 to 171646423 12 - TSS region transcription start site region 15109
Tssr15110 1 171648364 to 171648377 13 - TSS region transcription start site region 15110
Tssr15111 1 171648388 to 171648401 13 - TSS region transcription start site region 15111
Tssr15112 1 171648503 to 171648512 9 - TSS region transcription start site region 15112
Tssr15113 1 171648945 to 171648988 43 - TSS region transcription start site region 15113
Tssr15114 1 171649002 to 171649012 10 - TSS region transcription start site region 15114
Tssr15115 1 171652873 to 171652884 11 - TSS region transcription start site region 15115
Tssr15116 1 171652923 to 171652932 9 - TSS region transcription start site region 15116
n-THatg1 1 171669439 to 171669511 72 + tRNA gene nuclear encoded tRNA histidine 1 (anticodon ATG)
A630035G10Rik 1 171676684 to 171681980 5296 - unclassified gene RIKEN cDNA A630035G10 gene
Gm37981 1 171679336 to 171679870 534 - pseudogene predicted gene, 37981
Cpgi1030 1 171679709 to 171680026 317 CpG island CpG island 1030
Tssr10078 1 171681991 to 171681992 1 + TSS region transcription start site region 10078
Tssr10079 1 171682004 to 171682071 67 + TSS region transcription start site region 10079
Cd48 1 171682009 to 171705258 23249 + protein coding gene CD48 antigen
Tssr10080 1 171682077 to 171682092 15 + TSS region transcription start site region 10080
Gm37010 1 171688311 to 171690014 1703 + unclassified gene predicted gene, 37010
Tssr10081 1 171695889 to 171695907 18 + TSS region transcription start site region 10081
Tma7-ps 1 171711088 to 171711282 194 + pseudogene translational machinery associated 7 homolog (S. cerevisiae), pseudogene
Tssr10082 1 171712914 to 171712924 10 + TSS region transcription start site region 10082
Gm37693 1 171725405 to 171725638 233 - pseudogene predicted gene, 37693
Gm19030 1 171729915 to 171730466 551 + pseudogene predicted gene, 19030
Gm26412 1 171732060 to 171732114 54 - snRNA gene predicted gene, 26412
Gm22950 1 171733299 to 171733405 106 - snRNA gene predicted gene, 22950
Tssr10083 1 171762925 to 171762966 41 + TSS region transcription start site region 10083
Tssr10084 1 171766895 to 171766913 18 + TSS region transcription start site region 10084
Tssr10085 1 171766925 to 171766941 16 + TSS region transcription start site region 10085
Tssr10086 1 171767123 to 171767138 15 + TSS region transcription start site region 10086
Slamf1 1 171767132 to 171801184 34052 + protein coding gene signaling lymphocytic activation molecule family member 1
Tssr10087 1 171767144 to 171767170 26 + TSS region transcription start site region 10087
Tssr15117 1 171770938 to 171770946 8 - TSS region transcription start site region 15117
Tssr10088 1 171775159 to 171775162 3 + TSS region transcription start site region 10088
Tssr10089 1 171775364 to 171775372 8 + TSS region transcription start site region 10089
Tssr10090 1 171777176 to 171777187 11 + TSS region transcription start site region 10090
Tssr10091 1 171778598 to 171778639 41 + TSS region transcription start site region 10091
Tssr10092 1 171787979 to 171787985 6 + TSS region transcription start site region 10092
Tssr10093 1 171799615 to 171799627 12 + TSS region transcription start site region 10093
Tssr10094 1 171800456 to 171800467 11 + TSS region transcription start site region 10094
Scfr1 1 171804480 to 189571420 17766940 QTL stem cell frequency regulator 1
Emrq1 1 171804480 to 172888802 1084322 QTL emotional reactivity QTL 1
D1Mit113 1 171804480 to 171804689 209 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 113
Mptp1 1 171804480 to 192998742 21194262 QTL MPTP sensitivity 1
2410084L01Rik 1 171829669 to 171830181 512 unclassified gene RIKEN cDNA 2410084L01 gene
Tssr10095 1 171839694 to 171839699 5 + TSS region transcription start site region 10095
Cd84 1 171839697 to 171890718 51021 + protein coding gene CD84 antigen
Tssr10096 1 171839715 to 171839731 16 + TSS region transcription start site region 10096
Tssr10097 1 171840557 to 171840570 13 + TSS region transcription start site region 10097