Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171280317-171350323

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppox 1 171276991 to 171281192 4201 - protein coding gene protoporphyrinogen oxidase
Cpgi1020 1 171280784 to 171281702 918 CpG island CpG island 1020
Tssr15025 1 171280918 to 171280955 37 - TSS region transcription start site region 15025
Tssr15026 1 171280975 to 171280994 19 - TSS region transcription start site region 15026
Tssr15027 1 171281113 to 171281152 39 - TSS region transcription start site region 15027
Tssr15028 1 171281181 to 171281192 11 - TSS region transcription start site region 15028
Tssr10007 1 171281307 to 171281319 12 + TSS region transcription start site region 10007
Usp21 1 171281949 to 171287961 6012 - protein coding gene ubiquitin specific peptidase 21
Cpgi1021 1 171287390 to 171288201 811 CpG island CpG island 1021
Tssr15029 1 171287916 to 171287929 13 - TSS region transcription start site region 15029
Tssr15030 1 171287931 to 171287976 45 - TSS region transcription start site region 15030
Tssr10008 1 171288041 to 171288050 9 + TSS region transcription start site region 10008
Tssr10009 1 171288070 to 171288081 11 + TSS region transcription start site region 10009
Ufc1 1 171288564 to 171294982 6418 - protein coding gene ubiquitin-fold modifier conjugating enzyme 1
Cpgi1022 1 171294485 to 171294882 397 CpG island CpG island 1022
Tssr15031 1 171294752 to 171294787 35 - TSS region transcription start site region 15031
Tssr15032 1 171294824 to 171294839 15 - TSS region transcription start site region 15032
Tssr15033 1 171294937 to 171295011 74 - TSS region transcription start site region 15033
Rpl27-ps1 1 171305087 to 171305494 407 - pseudogene ribosomal protein L27, pseudogene 1
Gm25151 1 171308047 to 171308137 90 + snoRNA gene predicted gene, 25151
Tssr10010 1 171315317 to 171315323 6 + TSS region transcription start site region 10010
Gm20045 1 171320601 to 171326177 5576 - lincRNA gene predicted gene, 20045
Cpgi1023 1 171328726 to 171330147 1421 CpG island CpG island 1023
Tssr15034 1 171328923 to 171328951 28 - TSS region transcription start site region 15034
Tssr10011 1 171329015 to 171329027 12 + TSS region transcription start site region 10011
Dedd 1 171329145 to 171342331 13186 + protein coding gene death effector domain-containing
Tssr10012 1 171329376 to 171329404 28 + TSS region transcription start site region 10012
Tssr10013 1 171329448 to 171329501 53 + TSS region transcription start site region 10013
Tssr15035 1 171329509 to 171329537 28 - TSS region transcription start site region 15035
Tssr10014 1 171329623 to 171329653 30 + TSS region transcription start site region 10014
Tssr15036 1 171330296 to 171330302 6 - TSS region transcription start site region 15036
Tssr10015 1 171331122 to 171331129 7 + TSS region transcription start site region 10015
Tssr10016 1 171331340 to 171331358 18 + TSS region transcription start site region 10016
Tssr10017 1 171331362 to 171331374 12 + TSS region transcription start site region 10017
Tssr10018 1 171331414 to 171331418 4 + TSS region transcription start site region 10018
Nit1 1 171342235 to 171345645 3410 - protein coding gene nitrilase 1
Tssr15037 1 171344404 to 171344449 45 - TSS region transcription start site region 15037
Tssr10019 1 171344946 to 171344965 19 + TSS region transcription start site region 10019
Tssr15038 1 171345400 to 171345443 43 - TSS region transcription start site region 15038
Cpgi1024 1 171345401 to 171346510 1109 CpG island CpG island 1024
Pfdn2 1 171345554 to 171358170 12616 + protein coding gene prefoldin 2
Tssr15039 1 171345600 to 171345628 28 - TSS region transcription start site region 15039
Tssr15040 1 171345631 to 171345653 22 - TSS region transcription start site region 15040
Tssr10020 1 171345669 to 171345680 11 + TSS region transcription start site region 10020
Tssr10021 1 171345684 to 171345708 24 + TSS region transcription start site region 10021