Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171246181-171316192

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ndufs2 1 171234853 to 171247122 12269 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S2
Cpgi1016 1 171246884 to 171247520 636 CpG island CpG island 1016
Tssr15023 1 171247096 to 171247121 25 - TSS region transcription start site region 15023
Tssr10000 1 171247352 to 171247377 25 + TSS region transcription start site region 10000
Tssr10001 1 171250416 to 171250433 17 + TSS region transcription start site region 10001
Adamts4 1 171250422 to 171259922 9500 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
Tssr10002 1 171250555 to 171250557 2 + TSS region transcription start site region 10002
Tssr15024 1 171251664 to 171251675 11 - TSS region transcription start site region 15024
Cpgi1017 1 171256589 to 171256766 177 CpG island CpG island 1017
Cpgi1018 1 171258845 to 171259050 205 CpG island CpG island 1018
Tssr10003 1 171266725 to 171266731 6 + TSS region transcription start site region 10003
Cpgi1019 1 171270130 to 171270912 782 CpG island CpG island 1019
Tssr10004 1 171270321 to 171270360 39 + TSS region transcription start site region 10004
B4galt3 1 171270328 to 171276895 6567 + protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
Tssr10005 1 171270375 to 171270386 11 + TSS region transcription start site region 10005
Tssr10006 1 171271627 to 171271629 2 + TSS region transcription start site region 10006
Ppox 1 171276991 to 171281192 4201 - protein coding gene protoporphyrinogen oxidase
Cpgi1020 1 171280784 to 171281702 918 CpG island CpG island 1020
Tssr15025 1 171280918 to 171280955 37 - TSS region transcription start site region 15025
Tssr15026 1 171280975 to 171280994 19 - TSS region transcription start site region 15026
Tssr15027 1 171281113 to 171281152 39 - TSS region transcription start site region 15027
Tssr15028 1 171281181 to 171281192 11 - TSS region transcription start site region 15028
Tssr10007 1 171281307 to 171281319 12 + TSS region transcription start site region 10007
Usp21 1 171281949 to 171287961 6012 - protein coding gene ubiquitin specific peptidase 21
Cpgi1021 1 171287390 to 171288201 811 CpG island CpG island 1021
Tssr15029 1 171287916 to 171287929 13 - TSS region transcription start site region 15029
Tssr15030 1 171287931 to 171287976 45 - TSS region transcription start site region 15030
Tssr10008 1 171288041 to 171288050 9 + TSS region transcription start site region 10008
Tssr10009 1 171288070 to 171288081 11 + TSS region transcription start site region 10009
Ufc1 1 171288564 to 171294982 6418 - protein coding gene ubiquitin-fold modifier conjugating enzyme 1
Cpgi1022 1 171294485 to 171294882 397 CpG island CpG island 1022
Tssr15031 1 171294752 to 171294787 35 - TSS region transcription start site region 15031
Tssr15032 1 171294824 to 171294839 15 - TSS region transcription start site region 15032
Tssr15033 1 171294937 to 171295011 74 - TSS region transcription start site region 15033
Rpl27-ps1 1 171305087 to 171305494 407 - pseudogene ribosomal protein L27, pseudogene 1
Gm25151 1 171308047 to 171308137 90 + snoRNA gene predicted gene, 25151
Tssr10010 1 171315317 to 171315323 6 + TSS region transcription start site region 10010