Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171243999-173784012

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828 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scgq2 1 147249520 to 171804689 24555169 QTL spontaneous crescentic glomerulonephritis QTL 2
Nktcn1 1 168358674 to 171804689 3446015 QTL natural killer T cell numbers 1
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
Alcw1 1 171040785 to 172138790 1098005 QTL alcohol withdrawal 1
Ndufs2 1 171234853 to 171247122 12269 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S2
Cpgi1016 1 171246884 to 171247520 636 CpG island CpG island 1016
Tssr15023 1 171247096 to 171247121 25 - TSS region transcription start site region 15023
Tssr10000 1 171247352 to 171247377 25 + TSS region transcription start site region 10000
Tssr10001 1 171250416 to 171250433 17 + TSS region transcription start site region 10001
Adamts4 1 171250422 to 171259922 9500 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
Tssr10002 1 171250555 to 171250557 2 + TSS region transcription start site region 10002
Tssr15024 1 171251664 to 171251675 11 - TSS region transcription start site region 15024
Cpgi1017 1 171256589 to 171256766 177 CpG island CpG island 1017
Cpgi1018 1 171258845 to 171259050 205 CpG island CpG island 1018
Tssr10003 1 171266725 to 171266731 6 + TSS region transcription start site region 10003
Cpgi1019 1 171270130 to 171270912 782 CpG island CpG island 1019
Tssr10004 1 171270321 to 171270360 39 + TSS region transcription start site region 10004
B4galt3 1 171270328 to 171276895 6567 + protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
Tssr10005 1 171270375 to 171270386 11 + TSS region transcription start site region 10005
Tssr10006 1 171271627 to 171271629 2 + TSS region transcription start site region 10006
Ppox 1 171276991 to 171281192 4201 - protein coding gene protoporphyrinogen oxidase
Cpgi1020 1 171280784 to 171281702 918 CpG island CpG island 1020
Tssr15025 1 171280918 to 171280955 37 - TSS region transcription start site region 15025
Tssr15026 1 171280975 to 171280994 19 - TSS region transcription start site region 15026
Tssr15027 1 171281113 to 171281152 39 - TSS region transcription start site region 15027
Tssr15028 1 171281181 to 171281192 11 - TSS region transcription start site region 15028
Tssr10007 1 171281307 to 171281319 12 + TSS region transcription start site region 10007
Usp21 1 171281949 to 171287961 6012 - protein coding gene ubiquitin specific peptidase 21
Cpgi1021 1 171287390 to 171288201 811 CpG island CpG island 1021
Tssr15029 1 171287916 to 171287929 13 - TSS region transcription start site region 15029
Tssr15030 1 171287931 to 171287976 45 - TSS region transcription start site region 15030
Tssr10008 1 171288041 to 171288050 9 + TSS region transcription start site region 10008
Tssr10009 1 171288070 to 171288081 11 + TSS region transcription start site region 10009
Ufc1 1 171288564 to 171294982 6418 - protein coding gene ubiquitin-fold modifier conjugating enzyme 1
Cpgi1022 1 171294485 to 171294882 397 CpG island CpG island 1022
Tssr15031 1 171294752 to 171294787 35 - TSS region transcription start site region 15031
Tssr15032 1 171294824 to 171294839 15 - TSS region transcription start site region 15032
Tssr15033 1 171294937 to 171295011 74 - TSS region transcription start site region 15033
Rpl27-ps1 1 171305087 to 171305494 407 - pseudogene ribosomal protein L27, pseudogene 1
Gm25151 1 171308047 to 171308137 90 + snoRNA gene predicted gene, 25151
Tssr10010 1 171315317 to 171315323 6 + TSS region transcription start site region 10010
Gm20045 1 171320601 to 171326177 5576 - lincRNA gene predicted gene, 20045
Cpgi1023 1 171328726 to 171330147 1421 CpG island CpG island 1023
Tssr15034 1 171328923 to 171328951 28 - TSS region transcription start site region 15034
Tssr10011 1 171329015 to 171329027 12 + TSS region transcription start site region 10011
Dedd 1 171329145 to 171342331 13186 + protein coding gene death effector domain-containing
Tssr10012 1 171329376 to 171329404 28 + TSS region transcription start site region 10012
Tssr10013 1 171329448 to 171329501 53 + TSS region transcription start site region 10013
Tssr15035 1 171329509 to 171329537 28 - TSS region transcription start site region 15035
Tssr10014 1 171329623 to 171329653 30 + TSS region transcription start site region 10014
Tssr15036 1 171330296 to 171330302 6 - TSS region transcription start site region 15036
Tssr10015 1 171331122 to 171331129 7 + TSS region transcription start site region 10015
Tssr10016 1 171331340 to 171331358 18 + TSS region transcription start site region 10016
Tssr10017 1 171331362 to 171331374 12 + TSS region transcription start site region 10017
Tssr10018 1 171331414 to 171331418 4 + TSS region transcription start site region 10018
Nit1 1 171342235 to 171345645 3410 - protein coding gene nitrilase 1
Tssr15037 1 171344404 to 171344449 45 - TSS region transcription start site region 15037
Tssr10019 1 171344946 to 171344965 19 + TSS region transcription start site region 10019
Tssr15038 1 171345400 to 171345443 43 - TSS region transcription start site region 15038
Cpgi1024 1 171345401 to 171346510 1109 CpG island CpG island 1024
Pfdn2 1 171345554 to 171358170 12616 + protein coding gene prefoldin 2
Tssr15039 1 171345600 to 171345628 28 - TSS region transcription start site region 15039
Tssr15040 1 171345631 to 171345653 22 - TSS region transcription start site region 15040
Tssr10020 1 171345669 to 171345680 11 + TSS region transcription start site region 10020
Tssr10021 1 171345684 to 171345708 24 + TSS region transcription start site region 10021
Gm37154 1 171354126 to 171355415 1289 + unclassified gene predicted gene, 37154
Tssr10022 1 171356562 to 171356574 12 + TSS region transcription start site region 10022
Tssr10023 1 171358055 to 171358091 36 + TSS region transcription start site region 10023
Klhdc9 1 171358449 to 171360798 2349 - protein coding gene kelch domain containing 9
Cpgi1025 1 171360110 to 171361096 986 CpG island CpG island 1025
Tssr15041 1 171360726 to 171360765 39 - TSS region transcription start site region 15041
Gm37097 1 171362862 to 171363197 335 + pseudogene predicted gene, 37097
Tssr10024 1 171370052 to 171370091 39 + TSS region transcription start site region 10024
Tssr10025 1 171370092 to 171370111 19 + TSS region transcription start site region 10025
Tssr10026 1 171370113 to 171370130 17 + TSS region transcription start site region 10026
Tssr10027 1 171370160 to 171370171 11 + TSS region transcription start site region 10027
Nectin4 1 171370173 to 171388287 18114 + protein coding gene nectin cell adhesion molecule 4
Tssr10028 1 171370345 to 171370359 14 + TSS region transcription start site region 10028
Tssr10029 1 171370385 to 171370408 23 + TSS region transcription start site region 10029
Cpgi1026 1 171380023 to 171380555 532 CpG island CpG island 1026
Tssr10030 1 171380144 to 171380166 22 + TSS region transcription start site region 10030
Tssr10031 1 171383514 to 171383520 6 + TSS region transcription start site region 10031
Tssr15042 1 171388754 to 171388763 9 - TSS region transcription start site region 15042
Tssr15043 1 171388772 to 171388798 26 - TSS region transcription start site region 15043
Tssr10032 1 171388920 to 171388935 15 + TSS region transcription start site region 10032
Tssr10033 1 171388955 to 171389042 87 + TSS region transcription start site region 10033
Arhgap30 1 171388960 to 171410240 21280 + protein coding gene Rho GTPase activating protein 30
Tssr10034 1 171389068 to 171389099 31 + TSS region transcription start site region 10034
Tssr10035 1 171389100 to 171389115 15 + TSS region transcription start site region 10035
Tssr10036 1 171389130 to 171389137 7 + TSS region transcription start site region 10036
Tssr10037 1 171389146 to 171389157 11 + TSS region transcription start site region 10037
Tssr10038 1 171389181 to 171389197 16 + TSS region transcription start site region 10038
Tssr10039 1 171389211 to 171389233 22 + TSS region transcription start site region 10039
Tssr10040 1 171389240 to 171389247 7 + TSS region transcription start site region 10040
Tssr15044 1 171390178 to 171390205 27 - TSS region transcription start site region 15044
Tssr10041 1 171403197 to 171403246 49 + TSS region transcription start site region 10041
Tssr10042 1 171407902 to 171407911 9 + TSS region transcription start site region 10042
Tssr10043 1 171408017 to 171408034 17 + TSS region transcription start site region 10043
Tssr10044 1 171408113 to 171408133 20 + TSS region transcription start site region 10044
Tssr10045 1 171408160 to 171408178 18 + TSS region transcription start site region 10045
Tssr10046 1 171408179 to 171408197 18 + TSS region transcription start site region 10046
Tssr10047 1 171408210 to 171408222 12 + TSS region transcription start site region 10047
Tssr10048 1 171409615 to 171409625 10 + TSS region transcription start site region 10048
Cpgi1027 1 171411166 to 171412357 1191 CpG island CpG island 1027
Tssr10049 1 171411305 to 171411337 32 + TSS region transcription start site region 10049
Usf1 1 171411313 to 171418759 7446 + protein coding gene upstream transcription factor 1
Tssr10050 1 171411343 to 171411382 39 + TSS region transcription start site region 10050
Tssr10051 1 171418964 to 171418969 5 + TSS region transcription start site region 10051
Tssr10052 1 171419027 to 171419052 25 + TSS region transcription start site region 10052
Tstd1 1 171419033 to 171420352 1319 + protein coding gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 1
Tssr10053 1 171419060 to 171419092 32 + TSS region transcription start site region 10053
Tssr289 1 171419094 to 171419099 5 + TSS region transcription start site region 289
Gm26641 1 171423185 to 171437318 14133 - lincRNA gene predicted gene, 26641
Tssr15045 1 171437288 to 171437323 35 - TSS region transcription start site region 15045
Cpgi1028 1 171437340 to 171438146 806 CpG island CpG island 1028
Tssr10054 1 171437552 to 171437566 14 + TSS region transcription start site region 10054
F11r 1 171437561 to 171464593 27032 + protein coding gene F11 receptor
Tssr10055 1 171437568 to 171437584 16 + TSS region transcription start site region 10055
Tssr10056 1 171437594 to 171437605 11 + TSS region transcription start site region 10056
Tssr290 1 171439316 to 171439321 5 + TSS region transcription start site region 290
Tssr10057 1 171458105 to 171458119 14 + TSS region transcription start site region 10057
Tssr10058 1 171458333 to 171458359 26 + TSS region transcription start site region 10058
Tssr10059 1 171466009 to 171466016 7 + TSS region transcription start site region 10059
B930036N10Rik 1 171500568 to 171504111 3543 - antisense lncRNA gene RIKEN cDNA B930036N10 gene
Gm24871 1 171503048 to 171503163 115 - snRNA gene predicted gene, 24871
Cpgi1029 1 171503323 to 171504355 1032 CpG island CpG island 1029
Tssr10060 1 171503410 to 171503456 46 + TSS region transcription start site region 10060
Alyref2 1 171503478 to 171504750 1272 + protein coding gene Aly/REF export factor 2
Tssr10061 1 171503625 to 171503649 24 + TSS region transcription start site region 10061
Gm9765 1 171515233 to 171516922 1689 + pseudogene predicted gene 9765
Itln1 1 171518122 to 171535294 17172 - protein coding gene intelectin 1 (galactofuranose binding)
Tssr15046 1 171531131 to 171531148 17 - TSS region transcription start site region 15046
Tssr15047 1 171531660 to 171531688 28 - TSS region transcription start site region 15047
Tssr15048 1 171535284 to 171535300 16 - TSS region transcription start site region 15048
Gm37450 1 171541692 to 171541861 169 + pseudogene predicted gene, 37450
Gm35200 1 171553526 to 171557051 3525 - lncRNA gene predicted gene, 35200
Gm39703 1 171557872 to 171562126 4254 - lncRNA gene predicted gene, 39703
Cd244a 1 171558713 to 171585316 26603 + protein coding gene CD244 molecule A
Tssr10062 1 171558912 to 171558930 18 + TSS region transcription start site region 10062
Tssr10063 1 171559096 to 171559120 24 + TSS region transcription start site region 10063
Tssr10064 1 171559132 to 171559150 18 + TSS region transcription start site region 10064
Tssr10065 1 171559160 to 171559181 21 + TSS region transcription start site region 10065
Tssr10066 1 171559186 to 171559205 19 + TSS region transcription start site region 10066
Tssr10067 1 171559217 to 171559234 17 + TSS region transcription start site region 10067
Tssr10068 1 171559243 to 171559274 31 + TSS region transcription start site region 10068
Tssr10069 1 171559298 to 171559305 7 + TSS region transcription start site region 10069
Tssr15049 1 171562033 to 171562075 42 - TSS region transcription start site region 15049
Tssr10070 1 171580531 to 171580533 2 + TSS region transcription start site region 10070
Obq25 1 171582944 to 171582944 0 QTL obesity QTL 25
Ly9 1 171588624 to 171607410 18786 - protein coding gene lymphocyte antigen 9
Tssr15050 1 171601856 to 171601913 57 - TSS region transcription start site region 15050
Tssr15051 1 171602013 to 171602036 23 - TSS region transcription start site region 15051
Tssr15052 1 171605251 to 171605268 17 - TSS region transcription start site region 15052
Tssr15053 1 171607321 to 171607363 42 - TSS region transcription start site region 15053
Tssr15054 1 171607378 to 171607403 25 - TSS region transcription start site region 15054
Tssr10071 1 171607506 to 171607517 11 + TSS region transcription start site region 10071
Tssr15055 1 171616829 to 171616842 13 - TSS region transcription start site region 15055
Tssr10072 1 171619228 to 171619232 4 + TSS region transcription start site region 10072
Tssr10073 1 171628275 to 171628288 13 + TSS region transcription start site region 10073
Tssr15056 1 171630419 to 171630425 6 - TSS region transcription start site region 15056
Tssr10074 1 171630634 to 171630639 5 + TSS region transcription start site region 10074
Tssr15057 1 171632064 to 171632087 23 - TSS region transcription start site region 15057
Tssr15058 1 171632162 to 171632167 5 - TSS region transcription start site region 15058
Tssr15059 1 171632235 to 171632246 11 - TSS region transcription start site region 15059
Slamf7 1 171632403 to 171653035 20632 - protein coding gene SLAM family member 7
Tssr15060 1 171632779 to 171632798 19 - TSS region transcription start site region 15060
Tssr15061 1 171632845 to 171632856 11 - TSS region transcription start site region 15061
Tssr15062 1 171632869 to 171632879 10 - TSS region transcription start site region 15062
Tssr15063 1 171633164 to 171633180 16 - TSS region transcription start site region 15063
Tssr15064 1 171633312 to 171633331 19 - TSS region transcription start site region 15064
Tssr15065 1 171633900 to 171633905 5 - TSS region transcription start site region 15065
Tssr15066 1 171634074 to 171634084 10 - TSS region transcription start site region 15066
Tssr15067 1 171634108 to 171634119 11 - TSS region transcription start site region 15067
Tssr15068 1 171634127 to 171634141 14 - TSS region transcription start site region 15068
Tssr15069 1 171634157 to 171634164 7 - TSS region transcription start site region 15069
Tssr15070 1 171634202 to 171634218 16 - TSS region transcription start site region 15070
Tssr15071 1 171634285 to 171634311 26 - TSS region transcription start site region 15071
Tssr15072 1 171634322 to 171634343 21 - TSS region transcription start site region 15072
Tssr15073 1 171634444 to 171634455 11 - TSS region transcription start site region 15073
Tssr15074 1 171634491 to 171634509 18 - TSS region transcription start site region 15074
Tssr15075 1 171634547 to 171634558 11 - TSS region transcription start site region 15075
Tssr15076 1 171634566 to 171634589 23 - TSS region transcription start site region 15076
Tssr15077 1 171634625 to 171634638 13 - TSS region transcription start site region 15077
Tssr15078 1 171634642 to 171634653 11 - TSS region transcription start site region 15078
Tssr15079 1 171634715 to 171634732 17 - TSS region transcription start site region 15079
Tssr15080 1 171634739 to 171634764 25 - TSS region transcription start site region 15080
Tssr10075 1 171634757 to 171634769 12 + TSS region transcription start site region 10075
Tssr15081 1 171634793 to 171634823 30 - TSS region transcription start site region 15081
Tssr10076 1 171634871 to 171634906 35 + TSS region transcription start site region 10076
Gm37787 1 171634879 to 171636022 1143 + antisense lncRNA gene predicted gene, 37787
Tssr15082 1 171634914 to 171634932 18 - TSS region transcription start site region 15082
Tssr15083 1 171634943 to 171634961 18 - TSS region transcription start site region 15083
Tssr15084 1 171634965 to 171634976 11 - TSS region transcription start site region 15084
Tssr15085 1 171634979 to 171635001 22 - TSS region transcription start site region 15085
Tssr15086 1 171636340 to 171636380 40 - TSS region transcription start site region 15086
Tssr15087 1 171636666 to 171636691 25 - TSS region transcription start site region 15087
Tssr15088 1 171637179 to 171637188 9 - TSS region transcription start site region 15088
Tssr15089 1 171637241 to 171637268 27 - TSS region transcription start site region 15089
Tssr15090 1 171637323 to 171637337 14 - TSS region transcription start site region 15090
Tssr15091 1 171637346 to 171637378 32 - TSS region transcription start site region 15091