Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171169748-171289762

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcp4l1 1 171173264 to 171196268 23004 - protein coding gene Purkinje cell protein 4-like 1
Tssr14986 1 171173713 to 171173717 4 - TSS region transcription start site region 14986
Tssr14987 1 171174087 to 171174098 11 - TSS region transcription start site region 14987
Tssr9982 1 171174443 to 171174466 23 + TSS region transcription start site region 9982
Cpgi1013 1 171195843 to 171196252 409 CpG island CpG island 1013
Tssr285 1 171196171 to 171196182 11 - TSS region transcription start site region 285
Tssr14988 1 171196229 to 171196246 17 - TSS region transcription start site region 14988
Nr1i3 1 171213932 to 171218845 4913 + protein coding gene nuclear receptor subfamily 1, group I, member 3
Tssr9983 1 171213969 to 171214007 38 + TSS region transcription start site region 9983
Tssr9984 1 171214013 to 171214045 32 + TSS region transcription start site region 9984
Tomm40l 1 171217802 to 171222514 4712 - protein coding gene translocase of outer mitochondrial membrane 40-like
Tssr286 1 171219132 to 171219137 5 + TSS region transcription start site region 286
Tssr9985 1 171221774 to 171221785 11 + TSS region transcription start site region 9985
Cpgi1014 1 171221840 to 171222216 376 CpG island CpG island 1014
Tssr14989 1 171222435 to 171222471 36 - TSS region transcription start site region 14989
Tssr14990 1 171222508 to 171222519 11 - TSS region transcription start site region 14990
Apoa2 1 171225054 to 171226379 1325 + protein coding gene apolipoprotein A-II
Tssr9986 1 171225077 to 171225100 23 + TSS region transcription start site region 9986
Tssr9987 1 171225270 to 171225332 62 + TSS region transcription start site region 9987
Tssr9988 1 171225662 to 171225710 48 + TSS region transcription start site region 9988
Tssr9989 1 171225711 to 171225751 40 + TSS region transcription start site region 9989
Tssr9990 1 171225753 to 171225767 14 + TSS region transcription start site region 9990
Tssr9991 1 171226160 to 171226182 22 + TSS region transcription start site region 9991
Tssr14991 1 171226166 to 171226181 15 - TSS region transcription start site region 14991
Tssr14992 1 171226197 to 171226221 24 - TSS region transcription start site region 14992
Tssr14993 1 171226271 to 171226309 38 - TSS region transcription start site region 14993
Tssr9992 1 171226273 to 171226297 24 + TSS region transcription start site region 9992
Tssr14994 1 171226312 to 171226323 11 - TSS region transcription start site region 14994
Tssr14995 1 171226401 to 171226424 23 - TSS region transcription start site region 14995
Fcer1g 1 171229572 to 171234349 4777 - protein coding gene Fc receptor, IgE, high affinity I, gamma polypeptide
Tssr9993 1 171229573 to 171229584 11 + TSS region transcription start site region 9993
Tssr9994 1 171229597 to 171229611 14 + TSS region transcription start site region 9994
Tssr14996 1 171229601 to 171229613 12 - TSS region transcription start site region 14996
Tssr9995 1 171229654 to 171229717 63 + TSS region transcription start site region 9995
Tssr14997 1 171229676 to 171229685 9 - TSS region transcription start site region 14997
Tssr287 1 171229687 to 171229688 1 - TSS region transcription start site region 287
Tssr14998 1 171229710 to 171229727 17 - TSS region transcription start site region 14998
Tssr14999 1 171229735 to 171229746 11 - TSS region transcription start site region 14999
Tssr288 1 171229748 to 171229762 14 - TSS region transcription start site region 288
Tssr15000 1 171229797 to 171229807 10 - TSS region transcription start site region 15000
Tssr15001 1 171229817 to 171229832 15 - TSS region transcription start site region 15001
Tssr15002 1 171229834 to 171229851 17 - TSS region transcription start site region 15002
Tssr9996 1 171229840 to 171229856 16 + TSS region transcription start site region 9996
Tssr9997 1 171229857 to 171229895 38 + TSS region transcription start site region 9997
Tssr15003 1 171229863 to 171229874 11 - TSS region transcription start site region 15003
Tssr15004 1 171229875 to 171229893 18 - TSS region transcription start site region 15004
Tssr15005 1 171229915 to 171229930 15 - TSS region transcription start site region 15005
Tssr15006 1 171229934 to 171229946 12 - TSS region transcription start site region 15006
Tssr15007 1 171231015 to 171231056 41 - TSS region transcription start site region 15007
Tssr9998 1 171231166 to 171231195 29 + TSS region transcription start site region 9998
Tssr15008 1 171231199 to 171231219 20 - TSS region transcription start site region 15008
Tssr15009 1 171231223 to 171231233 10 - TSS region transcription start site region 15009
Tssr15010 1 171231245 to 171231264 19 - TSS region transcription start site region 15010
Tssr15011 1 171231929 to 171231950 21 - TSS region transcription start site region 15011
Tssr9999 1 171232127 to 171232160 33 + TSS region transcription start site region 9999
Cpgi1015 1 171234213 to 171234395 182 CpG island CpG island 1015
Tssr15012 1 171234276 to 171234287 11 - TSS region transcription start site region 15012
Tssr15013 1 171234290 to 171234324 34 - TSS region transcription start site region 15013
Tssr15014 1 171234333 to 171234344 11 - TSS region transcription start site region 15014
Tssr15015 1 171234485 to 171234501 16 - TSS region transcription start site region 15015
Tssr15016 1 171234607 to 171234620 13 - TSS region transcription start site region 15016
Tssr15017 1 171234642 to 171234650 8 - TSS region transcription start site region 15017
Tssr15018 1 171234698 to 171234729 31 - TSS region transcription start site region 15018
Ndufs2 1 171234853 to 171247122 12269 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S2
Tssr15019 1 171237598 to 171237606 8 - TSS region transcription start site region 15019
Tssr15020 1 171237607 to 171237624 17 - TSS region transcription start site region 15020
Tssr15021 1 171240107 to 171240116 9 - TSS region transcription start site region 15021
Bllact1 1 171241019 to 171241019 0 QTL base line locomotor activity 1
Tssr15022 1 171241045 to 171241059 14 - TSS region transcription start site region 15022
Cpgi1016 1 171246884 to 171247520 636 CpG island CpG island 1016
Tssr15023 1 171247096 to 171247121 25 - TSS region transcription start site region 15023
Tssr10000 1 171247352 to 171247377 25 + TSS region transcription start site region 10000
Tssr10001 1 171250416 to 171250433 17 + TSS region transcription start site region 10001
Adamts4 1 171250422 to 171259922 9500 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
Tssr10002 1 171250555 to 171250557 2 + TSS region transcription start site region 10002
Tssr15024 1 171251664 to 171251675 11 - TSS region transcription start site region 15024
Cpgi1017 1 171256589 to 171256766 177 CpG island CpG island 1017
Cpgi1018 1 171258845 to 171259050 205 CpG island CpG island 1018
Tssr10003 1 171266725 to 171266731 6 + TSS region transcription start site region 10003
Cpgi1019 1 171270130 to 171270912 782 CpG island CpG island 1019
Tssr10004 1 171270321 to 171270360 39 + TSS region transcription start site region 10004
B4galt3 1 171270328 to 171276895 6567 + protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
Tssr10005 1 171270375 to 171270386 11 + TSS region transcription start site region 10005
Tssr10006 1 171271627 to 171271629 2 + TSS region transcription start site region 10006
Ppox 1 171276991 to 171281192 4201 - protein coding gene protoporphyrinogen oxidase
Cpgi1020 1 171280784 to 171281702 918 CpG island CpG island 1020
Tssr15025 1 171280918 to 171280955 37 - TSS region transcription start site region 15025
Tssr15026 1 171280975 to 171280994 19 - TSS region transcription start site region 15026
Tssr15027 1 171281113 to 171281152 39 - TSS region transcription start site region 15027
Tssr15028 1 171281181 to 171281192 11 - TSS region transcription start site region 15028
Tssr10007 1 171281307 to 171281319 12 + TSS region transcription start site region 10007
Usp21 1 171281949 to 171287961 6012 - protein coding gene ubiquitin specific peptidase 21
Cpgi1021 1 171287390 to 171288201 811 CpG island CpG island 1021
Tssr15029 1 171287916 to 171287929 13 - TSS region transcription start site region 15029
Tssr15030 1 171287931 to 171287976 45 - TSS region transcription start site region 15030
Tssr10008 1 171288041 to 171288050 9 + TSS region transcription start site region 10008
Tssr10009 1 171288070 to 171288081 11 + TSS region transcription start site region 10009
Ufc1 1 171288564 to 171294982 6418 - protein coding gene ubiquitin-fold modifier conjugating enzyme 1