Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171061838-171141920

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(1Fcgr2b-Fcgr3)1Vlcg 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr1, Regeneron Pharmaceuticals
Del(1Fcgr2b-Fcgr3)1Rav 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr 1, Jeffrey V Ravetch 1
Fcgr3 1 171051174 to 171064935 13761 - protein coding gene Fc receptor, IgG, low affinity III
Cpgi1005 1 171063753 to 171064053 300 CpG island CpG island 1005
n-TEctc5 1 171064164 to 171064235 71 - tRNA gene nuclear encoded tRNA glutamic acid 5 (anticodon CTC)
Mir6546 1 171064591 to 171064652 61 - miRNA gene microRNA 6546
n-TGtcc1 1 171064699 to 171064770 71 - tRNA gene nuclear encoded tRNA glycine 1 (anticodon TCC)
n-TDgtc3 1 171065358 to 171065429 71 - tRNA gene nuclear encoded tRNA aspartic acid 3 (anticodon GTC)
n-TLcag6 1 171065984 to 171066066 82 + tRNA gene nuclear encoded tRNA leucine 6 (anticodon CAG)
n-TGgcc12 1 171066631 to 171066701 70 + tRNA gene nuclear encoded tRNA glycine 12 (anticodon GCC)
n-TEctc8 1 171071792 to 171071863 71 - tRNA gene nuclear encoded tRNA glutamic acid 8 (anticodon CTC)
Gm27552 1 171072226 to 171072287 61 - miRNA gene predicted gene, 27552
n-TGtcc5 1 171072334 to 171072405 71 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon TCC)
n-TDgtc7 1 171072993 to 171073064 71 - tRNA gene nuclear encoded tRNA aspartic acid 7 (anticodon GTC)
n-TLcag7 1 171073619 to 171073701 82 + tRNA gene nuclear encoded tRNA leucine 7 (anticodon CAG)
n-TGgcc13 1 171074302 to 171074372 70 + tRNA gene nuclear encoded tRNA glycine 13 (anticodon GCC)
Cpgi1006 1 171078614 to 171078784 170 CpG island CpG island 1006
n-TEctc7 1 171079406 to 171079477 71 - tRNA gene nuclear encoded tRNA glutamic acid 7 (anticodon CTC)
Gm27844 1 171079840 to 171079901 61 - miRNA gene predicted gene, 27844
n-TGtcc4 1 171079948 to 171080019 71 - tRNA gene nuclear encoded tRNA glycine 4 (anticodon TCC)
n-TDgtc6 1 171080607 to 171080678 71 - tRNA gene nuclear encoded tRNA aspartic acid 6 (anticodon GTC)
n-TLcag8 1 171081233 to 171081315 82 + tRNA gene nuclear encoded tRNA leucine 8 (anticodon CAG)
n-TGgcc14 1 171081876 to 171081946 70 + tRNA gene nuclear encoded tRNA glycine 14 (anticodon GCC)
Cpgi1007 1 171085741 to 171086115 374 CpG island CpG island 1007
Tssr14978 1 171089980 to 171089989 9 - TSS region transcription start site region 14978
Tssr14979 1 171101117 to 171101118 1 - TSS region transcription start site region 14979
Cpgi1008 1 171101828 to 171102879 1051 CpG island CpG island 1008
n-TLcag9 1 171101838 to 171101920 82 - tRNA gene nuclear encoded tRNA leucine 9 (anticodon CAG)
n-TDgtc5 1 171102371 to 171102442 71 + tRNA gene nuclear encoded tRNA aspartic acid 5 (anticodon GTC)
n-TGtcc3 1 171102756 to 171102827 71 + tRNA gene nuclear encoded tRNA glycine 3 (anticodon TCC)
n-TEctc6 1 171103043 to 171103114 71 + tRNA gene nuclear encoded tRNA glutamic acid 6 (anticodon CTC)
Cpgi1009 1 171110931 to 171111186 255 CpG island CpG island 1009
n-TVcac6 1 171111443 to 171111515 72 + tRNA gene nuclear encoded tRNA valine 6 (anticodon CAC)
Cpgi1010 1 171113827 to 171114265 438 CpG island CpG island 1010
Cfap126 1 171113918 to 171126967 13049 + protein coding gene cilia and flagella associated protein 126
Tssr14980 1 171113945 to 171113954 9 - TSS region transcription start site region 14980
Tssr9962 1 171113977 to 171114048 71 + TSS region transcription start site region 9962
Tssr9963 1 171114196 to 171114200 4 + TSS region transcription start site region 9963
Tssr9964 1 171121630 to 171121637 7 + TSS region transcription start site region 9964
Tssr9965 1 171121646 to 171121669 23 + TSS region transcription start site region 9965
Tssr9966 1 171121671 to 171121678 7 + TSS region transcription start site region 9966
Tssr9967 1 171121681 to 171121696 15 + TSS region transcription start site region 9967
Tssr9968 1 171121701 to 171121708 7 + TSS region transcription start site region 9968
Tssr9969 1 171122033 to 171122053 20 + TSS region transcription start site region 9969
Tssr9970 1 171123126 to 171123168 42 + TSS region transcription start site region 9970
Tssr9971 1 171125315 to 171125324 9 + TSS region transcription start site region 9971
Tssr9972 1 171126091 to 171126113 22 + TSS region transcription start site region 9972
Sdhc 1 171129157 to 171150603 21446 - protein coding gene succinate dehydrogenase complex, subunit C, integral membrane protein
Tssr14981 1 171129720 to 171129745 25 - TSS region transcription start site region 14981
Tssr14982 1 171129860 to 171129900 40 - TSS region transcription start site region 14982
Gm46172 1 171131757 to 171133767 2010 - lncRNA gene predicted gene, 46172
Tssr14983 1 171136063 to 171136075 12 - TSS region transcription start site region 14983
Tssr14984 1 171136148 to 171136160 12 - TSS region transcription start site region 14984