Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171060568-171944111

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472 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scgq2 1 147249520 to 171804689 24555169 QTL spontaneous crescentic glomerulonephritis QTL 2
Nktcn1 1 168358674 to 171804689 3446015 QTL natural killer T cell numbers 1
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
Del(1Fcgr2b-Fcgr3)1Vlcg 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr1, Regeneron Pharmaceuticals
Del(1Fcgr2b-Fcgr3)1Rav 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr 1, Jeffrey V Ravetch 1
Fcgr3 1 171051174 to 171064935 13761 - protein coding gene Fc receptor, IgG, low affinity III
Cpgi1005 1 171063753 to 171064053 300 CpG island CpG island 1005
n-TEctc5 1 171064164 to 171064235 71 - tRNA gene nuclear encoded tRNA glutamic acid 5 (anticodon CTC)
Mir6546 1 171064591 to 171064652 61 - miRNA gene microRNA 6546
n-TGtcc1 1 171064699 to 171064770 71 - tRNA gene nuclear encoded tRNA glycine 1 (anticodon TCC)
n-TDgtc3 1 171065358 to 171065429 71 - tRNA gene nuclear encoded tRNA aspartic acid 3 (anticodon GTC)
n-TLcag6 1 171065984 to 171066066 82 + tRNA gene nuclear encoded tRNA leucine 6 (anticodon CAG)
n-TGgcc12 1 171066631 to 171066701 70 + tRNA gene nuclear encoded tRNA glycine 12 (anticodon GCC)
n-TEctc8 1 171071792 to 171071863 71 - tRNA gene nuclear encoded tRNA glutamic acid 8 (anticodon CTC)
Gm27552 1 171072226 to 171072287 61 - miRNA gene predicted gene, 27552
n-TGtcc5 1 171072334 to 171072405 71 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon TCC)
n-TDgtc7 1 171072993 to 171073064 71 - tRNA gene nuclear encoded tRNA aspartic acid 7 (anticodon GTC)
n-TLcag7 1 171073619 to 171073701 82 + tRNA gene nuclear encoded tRNA leucine 7 (anticodon CAG)
n-TGgcc13 1 171074302 to 171074372 70 + tRNA gene nuclear encoded tRNA glycine 13 (anticodon GCC)
Cpgi1006 1 171078614 to 171078784 170 CpG island CpG island 1006
n-TEctc7 1 171079406 to 171079477 71 - tRNA gene nuclear encoded tRNA glutamic acid 7 (anticodon CTC)
Gm27844 1 171079840 to 171079901 61 - miRNA gene predicted gene, 27844
n-TGtcc4 1 171079948 to 171080019 71 - tRNA gene nuclear encoded tRNA glycine 4 (anticodon TCC)
n-TDgtc6 1 171080607 to 171080678 71 - tRNA gene nuclear encoded tRNA aspartic acid 6 (anticodon GTC)
n-TLcag8 1 171081233 to 171081315 82 + tRNA gene nuclear encoded tRNA leucine 8 (anticodon CAG)
n-TGgcc14 1 171081876 to 171081946 70 + tRNA gene nuclear encoded tRNA glycine 14 (anticodon GCC)
Cpgi1007 1 171085741 to 171086115 374 CpG island CpG island 1007
Tssr14978 1 171089980 to 171089989 9 - TSS region transcription start site region 14978
Tssr14979 1 171101117 to 171101118 1 - TSS region transcription start site region 14979
Cpgi1008 1 171101828 to 171102879 1051 CpG island CpG island 1008
n-TLcag9 1 171101838 to 171101920 82 - tRNA gene nuclear encoded tRNA leucine 9 (anticodon CAG)
n-TDgtc5 1 171102371 to 171102442 71 + tRNA gene nuclear encoded tRNA aspartic acid 5 (anticodon GTC)
n-TGtcc3 1 171102756 to 171102827 71 + tRNA gene nuclear encoded tRNA glycine 3 (anticodon TCC)
n-TEctc6 1 171103043 to 171103114 71 + tRNA gene nuclear encoded tRNA glutamic acid 6 (anticodon CTC)
Cpgi1009 1 171110931 to 171111186 255 CpG island CpG island 1009
n-TVcac6 1 171111443 to 171111515 72 + tRNA gene nuclear encoded tRNA valine 6 (anticodon CAC)
Cpgi1010 1 171113827 to 171114265 438 CpG island CpG island 1010
Cfap126 1 171113918 to 171126967 13049 + protein coding gene cilia and flagella associated protein 126
Tssr14980 1 171113945 to 171113954 9 - TSS region transcription start site region 14980
Tssr9962 1 171113977 to 171114048 71 + TSS region transcription start site region 9962
Tssr9963 1 171114196 to 171114200 4 + TSS region transcription start site region 9963
Tssr9964 1 171121630 to 171121637 7 + TSS region transcription start site region 9964
Tssr9965 1 171121646 to 171121669 23 + TSS region transcription start site region 9965
Tssr9966 1 171121671 to 171121678 7 + TSS region transcription start site region 9966
Tssr9967 1 171121681 to 171121696 15 + TSS region transcription start site region 9967
Tssr9968 1 171121701 to 171121708 7 + TSS region transcription start site region 9968
Tssr9969 1 171122033 to 171122053 20 + TSS region transcription start site region 9969
Tssr9970 1 171123126 to 171123168 42 + TSS region transcription start site region 9970
Tssr9971 1 171125315 to 171125324 9 + TSS region transcription start site region 9971
Tssr9972 1 171126091 to 171126113 22 + TSS region transcription start site region 9972
Sdhc 1 171129157 to 171150603 21446 - protein coding gene succinate dehydrogenase complex, subunit C, integral membrane protein
Tssr14981 1 171129720 to 171129745 25 - TSS region transcription start site region 14981
Tssr14982 1 171129860 to 171129900 40 - TSS region transcription start site region 14982
Gm46172 1 171131757 to 171133767 2010 - lncRNA gene predicted gene, 46172
Tssr14983 1 171136063 to 171136075 12 - TSS region transcription start site region 14983
Tssr14984 1 171136148 to 171136160 12 - TSS region transcription start site region 14984
Cpgi1011 1 171150327 to 171150760 433 CpG island CpG island 1011
Tssr14985 1 171150592 to 171150609 17 - TSS region transcription start site region 14985
Mpz 1 171150713 to 171161130 10417 + protein coding gene myelin protein zero
Tssr9973 1 171155512 to 171155529 17 + TSS region transcription start site region 9973
Tssr9974 1 171158767 to 171158779 12 + TSS region transcription start site region 9974
Tssr9975 1 171159547 to 171159559 12 + TSS region transcription start site region 9975
Cpgi1012 1 171159766 to 171160114 348 CpG island CpG island 1012
Tssr9976 1 171160059 to 171160076 17 + TSS region transcription start site region 9976
Tssr9977 1 171160284 to 171160306 22 + TSS region transcription start site region 9977
Tssr9978 1 171160308 to 171160335 27 + TSS region transcription start site region 9978
Tssr9979 1 171160356 to 171160359 3 + TSS region transcription start site region 9979
Tssr9980 1 171160423 to 171160434 11 + TSS region transcription start site region 9980
Tssr9981 1 171160643 to 171160652 9 + TSS region transcription start site region 9981
Pcp4l1 1 171173264 to 171196268 23004 - protein coding gene Purkinje cell protein 4-like 1
Tssr14986 1 171173713 to 171173717 4 - TSS region transcription start site region 14986
Tssr14987 1 171174087 to 171174098 11 - TSS region transcription start site region 14987
Tssr9982 1 171174443 to 171174466 23 + TSS region transcription start site region 9982
Cpgi1013 1 171195843 to 171196252 409 CpG island CpG island 1013
Tssr285 1 171196171 to 171196182 11 - TSS region transcription start site region 285
Tssr14988 1 171196229 to 171196246 17 - TSS region transcription start site region 14988
Nr1i3 1 171213932 to 171218845 4913 + protein coding gene nuclear receptor subfamily 1, group I, member 3
Tssr9983 1 171213969 to 171214007 38 + TSS region transcription start site region 9983
Tssr9984 1 171214013 to 171214045 32 + TSS region transcription start site region 9984
Tomm40l 1 171217802 to 171222514 4712 - protein coding gene translocase of outer mitochondrial membrane 40-like
Tssr286 1 171219132 to 171219137 5 + TSS region transcription start site region 286
Tssr9985 1 171221774 to 171221785 11 + TSS region transcription start site region 9985
Cpgi1014 1 171221840 to 171222216 376 CpG island CpG island 1014
Tssr14989 1 171222435 to 171222471 36 - TSS region transcription start site region 14989
Tssr14990 1 171222508 to 171222519 11 - TSS region transcription start site region 14990
Apoa2 1 171225054 to 171226379 1325 + protein coding gene apolipoprotein A-II
Tssr9986 1 171225077 to 171225100 23 + TSS region transcription start site region 9986
Tssr9987 1 171225270 to 171225332 62 + TSS region transcription start site region 9987
Tssr9988 1 171225662 to 171225710 48 + TSS region transcription start site region 9988
Tssr9989 1 171225711 to 171225751 40 + TSS region transcription start site region 9989
Tssr9990 1 171225753 to 171225767 14 + TSS region transcription start site region 9990
Tssr9991 1 171226160 to 171226182 22 + TSS region transcription start site region 9991
Tssr14991 1 171226166 to 171226181 15 - TSS region transcription start site region 14991
Tssr14992 1 171226197 to 171226221 24 - TSS region transcription start site region 14992
Tssr14993 1 171226271 to 171226309 38 - TSS region transcription start site region 14993
Tssr9992 1 171226273 to 171226297 24 + TSS region transcription start site region 9992
Tssr14994 1 171226312 to 171226323 11 - TSS region transcription start site region 14994
Tssr14995 1 171226401 to 171226424 23 - TSS region transcription start site region 14995
Fcer1g 1 171229572 to 171234349 4777 - protein coding gene Fc receptor, IgE, high affinity I, gamma polypeptide
Tssr9993 1 171229573 to 171229584 11 + TSS region transcription start site region 9993
Tssr9994 1 171229597 to 171229611 14 + TSS region transcription start site region 9994
Tssr14996 1 171229601 to 171229613 12 - TSS region transcription start site region 14996
Tssr9995 1 171229654 to 171229717 63 + TSS region transcription start site region 9995
Tssr14997 1 171229676 to 171229685 9 - TSS region transcription start site region 14997
Tssr287 1 171229687 to 171229688 1 - TSS region transcription start site region 287
Tssr14998 1 171229710 to 171229727 17 - TSS region transcription start site region 14998
Tssr14999 1 171229735 to 171229746 11 - TSS region transcription start site region 14999
Tssr288 1 171229748 to 171229762 14 - TSS region transcription start site region 288
Tssr15000 1 171229797 to 171229807 10 - TSS region transcription start site region 15000
Tssr15001 1 171229817 to 171229832 15 - TSS region transcription start site region 15001
Tssr15002 1 171229834 to 171229851 17 - TSS region transcription start site region 15002
Tssr9996 1 171229840 to 171229856 16 + TSS region transcription start site region 9996
Tssr9997 1 171229857 to 171229895 38 + TSS region transcription start site region 9997
Tssr15003 1 171229863 to 171229874 11 - TSS region transcription start site region 15003
Tssr15004 1 171229875 to 171229893 18 - TSS region transcription start site region 15004
Tssr15005 1 171229915 to 171229930 15 - TSS region transcription start site region 15005
Tssr15006 1 171229934 to 171229946 12 - TSS region transcription start site region 15006
Tssr15007 1 171231015 to 171231056 41 - TSS region transcription start site region 15007
Tssr9998 1 171231166 to 171231195 29 + TSS region transcription start site region 9998
Tssr15008 1 171231199 to 171231219 20 - TSS region transcription start site region 15008
Tssr15009 1 171231223 to 171231233 10 - TSS region transcription start site region 15009
Tssr15010 1 171231245 to 171231264 19 - TSS region transcription start site region 15010
Tssr15011 1 171231929 to 171231950 21 - TSS region transcription start site region 15011
Tssr9999 1 171232127 to 171232160 33 + TSS region transcription start site region 9999
Cpgi1015 1 171234213 to 171234395 182 CpG island CpG island 1015
Tssr15012 1 171234276 to 171234287 11 - TSS region transcription start site region 15012
Tssr15013 1 171234290 to 171234324 34 - TSS region transcription start site region 15013
Tssr15014 1 171234333 to 171234344 11 - TSS region transcription start site region 15014
Tssr15015 1 171234485 to 171234501 16 - TSS region transcription start site region 15015
Tssr15016 1 171234607 to 171234620 13 - TSS region transcription start site region 15016
Tssr15017 1 171234642 to 171234650 8 - TSS region transcription start site region 15017
Tssr15018 1 171234698 to 171234729 31 - TSS region transcription start site region 15018
Ndufs2 1 171234853 to 171247122 12269 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S2
Tssr15019 1 171237598 to 171237606 8 - TSS region transcription start site region 15019
Tssr15020 1 171237607 to 171237624 17 - TSS region transcription start site region 15020
Tssr15021 1 171240107 to 171240116 9 - TSS region transcription start site region 15021
Bllact1 1 171241019 to 171241019 0 QTL base line locomotor activity 1
Tssr15022 1 171241045 to 171241059 14 - TSS region transcription start site region 15022
Cpgi1016 1 171246884 to 171247520 636 CpG island CpG island 1016
Tssr15023 1 171247096 to 171247121 25 - TSS region transcription start site region 15023
Tssr10000 1 171247352 to 171247377 25 + TSS region transcription start site region 10000
Tssr10001 1 171250416 to 171250433 17 + TSS region transcription start site region 10001
Adamts4 1 171250422 to 171259922 9500 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
Tssr10002 1 171250555 to 171250557 2 + TSS region transcription start site region 10002
Tssr15024 1 171251664 to 171251675 11 - TSS region transcription start site region 15024
Cpgi1017 1 171256589 to 171256766 177 CpG island CpG island 1017
Cpgi1018 1 171258845 to 171259050 205 CpG island CpG island 1018
Tssr10003 1 171266725 to 171266731 6 + TSS region transcription start site region 10003
Cpgi1019 1 171270130 to 171270912 782 CpG island CpG island 1019
Tssr10004 1 171270321 to 171270360 39 + TSS region transcription start site region 10004
B4galt3 1 171270328 to 171276895 6567 + protein coding gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
Tssr10005 1 171270375 to 171270386 11 + TSS region transcription start site region 10005
Tssr10006 1 171271627 to 171271629 2 + TSS region transcription start site region 10006
Ppox 1 171276991 to 171281192 4201 - protein coding gene protoporphyrinogen oxidase
Cpgi1020 1 171280784 to 171281702 918 CpG island CpG island 1020
Tssr15025 1 171280918 to 171280955 37 - TSS region transcription start site region 15025
Tssr15026 1 171280975 to 171280994 19 - TSS region transcription start site region 15026
Tssr15027 1 171281113 to 171281152 39 - TSS region transcription start site region 15027
Tssr15028 1 171281181 to 171281192 11 - TSS region transcription start site region 15028
Tssr10007 1 171281307 to 171281319 12 + TSS region transcription start site region 10007
Usp21 1 171281949 to 171287961 6012 - protein coding gene ubiquitin specific peptidase 21
Cpgi1021 1 171287390 to 171288201 811 CpG island CpG island 1021
Tssr15029 1 171287916 to 171287929 13 - TSS region transcription start site region 15029
Tssr15030 1 171287931 to 171287976 45 - TSS region transcription start site region 15030
Tssr10008 1 171288041 to 171288050 9 + TSS region transcription start site region 10008
Tssr10009 1 171288070 to 171288081 11 + TSS region transcription start site region 10009
Ufc1 1 171288564 to 171294982 6418 - protein coding gene ubiquitin-fold modifier conjugating enzyme 1
Cpgi1022 1 171294485 to 171294882 397 CpG island CpG island 1022
Tssr15031 1 171294752 to 171294787 35 - TSS region transcription start site region 15031
Tssr15032 1 171294824 to 171294839 15 - TSS region transcription start site region 15032
Tssr15033 1 171294937 to 171295011 74 - TSS region transcription start site region 15033
Rpl27-ps1 1 171305087 to 171305494 407 - pseudogene ribosomal protein L27, pseudogene 1
Gm25151 1 171308047 to 171308137 90 + snoRNA gene predicted gene, 25151
Tssr10010 1 171315317 to 171315323 6 + TSS region transcription start site region 10010
Gm20045 1 171320601 to 171326177 5576 - lincRNA gene predicted gene, 20045
Cpgi1023 1 171328726 to 171330147 1421 CpG island CpG island 1023
Tssr15034 1 171328923 to 171328951 28 - TSS region transcription start site region 15034
Tssr10011 1 171329015 to 171329027 12 + TSS region transcription start site region 10011
Dedd 1 171329145 to 171342331 13186 + protein coding gene death effector domain-containing
Tssr10012 1 171329376 to 171329404 28 + TSS region transcription start site region 10012
Tssr10013 1 171329448 to 171329501 53 + TSS region transcription start site region 10013
Tssr15035 1 171329509 to 171329537 28 - TSS region transcription start site region 15035
Tssr10014 1 171329623 to 171329653 30 + TSS region transcription start site region 10014
Tssr15036 1 171330296 to 171330302 6 - TSS region transcription start site region 15036
Tssr10015 1 171331122 to 171331129 7 + TSS region transcription start site region 10015
Tssr10016 1 171331340 to 171331358 18 + TSS region transcription start site region 10016
Tssr10017 1 171331362 to 171331374 12 + TSS region transcription start site region 10017
Tssr10018 1 171331414 to 171331418 4 + TSS region transcription start site region 10018
Nit1 1 171342235 to 171345645 3410 - protein coding gene nitrilase 1
Tssr15037 1 171344404 to 171344449 45 - TSS region transcription start site region 15037
Tssr10019 1 171344946 to 171344965 19 + TSS region transcription start site region 10019
Tssr15038 1 171345400 to 171345443 43 - TSS region transcription start site region 15038
Cpgi1024 1 171345401 to 171346510 1109 CpG island CpG island 1024
Pfdn2 1 171345554 to 171358170 12616 + protein coding gene prefoldin 2
Tssr15039 1 171345600 to 171345628 28 - TSS region transcription start site region 15039
Tssr15040 1 171345631 to 171345653 22 - TSS region transcription start site region 15040
Tssr10020 1 171345669 to 171345680 11 + TSS region transcription start site region 10020
Tssr10021 1 171345684 to 171345708 24 + TSS region transcription start site region 10021
Gm37154 1 171354126 to 171355415 1289 + unclassified gene predicted gene, 37154
Tssr10022 1 171356562 to 171356574 12 + TSS region transcription start site region 10022