Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171031174-171084935

49 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Del(1Fcgr2b-Fcgr3)1Vlcg	1	170960558 to 171064935	104377		chromosomal deletion	deletion, Chr1, Regeneron Pharmaceuticals
Del(1Fcgr2b-Fcgr3)1Rav	1	170960558 to 171064935	104377		chromosomal deletion	deletion, Chr 1, Jeffrey V Ravetch 1
Tssr9959	1	171032854 to 171032858	4	+	TSS region	transcription start site region 9959
Cpgi1001	1	171033139 to 171033330	191		CpG island	CpG island 1001
Gm35090	1	171033230 to 171034018	788	-	lncRNA gene	predicted gene, 35090
Cpgi1002	1	171033522 to 171034074	552		CpG island	CpG island 1002
n-TNgtt6	1	171033942 to 171034015	73	-	tRNA gene	nuclear encoded tRNA asparagine 6 (anticodon GTT)
n-TDgtc4	1	171037029 to 171037100	71	-	tRNA gene	nuclear encoded tRNA aspartic acid 4 (anticodon GTC)
n-TGtcc2	1	171037997 to 171038068	71	-	tRNA gene	nuclear encoded tRNA glycine 2 (anticodon TCC)
Cpgi1003	1	171038060 to 171038560	500		CpG island	CpG island 1003
n-TLcag3	1	171038614 to 171038696	82	+	tRNA gene	nuclear encoded tRNA leucine 3 (anticodon CAG)
Alcw1	1	171040785 to 172138790	1098005		QTL	alcohol withdrawal 1
Cpgi1004	1	171044596 to 171044828	232		CpG island	CpG island 1004
n-TGgcc4	1	171044985 to 171045055	70	+	tRNA gene	nuclear encoded tRNA glycine 4 (anticodon GCC)
Szs1	1	171051174 to 174628870	3577696		QTL	seizure susceptibility 1
Fcgr3	1	171051174 to 171064935	13761	-	protein coding gene	Fc receptor, IgG, low affinity III
Qrr1	1	171051174 to 175492500	4441326		QTL	QTL rich region on chromosome 1
Tssr9960	1	171051188 to 171051201	13	+	TSS region	transcription start site region 9960
Tssr9961	1	171051246 to 171051267	21	+	TSS region	transcription start site region 9961
Tssr14968	1	171051821 to 171051864	43	-	TSS region	transcription start site region 14968
Tssr14969	1	171053979 to 171054011	32	-	TSS region	transcription start site region 14969
Tssr14970	1	171057971 to 171057981	10	-	TSS region	transcription start site region 14970
Tssr14971	1	171058038 to 171058060	22	-	TSS region	transcription start site region 14971
Tssr14972	1	171058078 to 171058079	1	-	TSS region	transcription start site region 14972
Tssr14973	1	171058374 to 171058383	9	-	TSS region	transcription start site region 14973
Tssr14974	1	171058605 to 171058637	32	-	TSS region	transcription start site region 14974
Tssr14975	1	171059348 to 171059379	31	-	TSS region	transcription start site region 14975
Tssr14976	1	171059390 to 171059405	15	-	TSS region	transcription start site region 14976
Tssr14977	1	171059589 to 171059595	6	-	TSS region	transcription start site region 14977
Cpgi1005	1	171063753 to 171064053	300		CpG island	CpG island 1005
n-TEctc5	1	171064164 to 171064235	71	-	tRNA gene	nuclear encoded tRNA glutamic acid 5 (anticodon CTC)
Mir6546	1	171064591 to 171064652	61	-	miRNA gene	microRNA 6546
n-TGtcc1	1	171064699 to 171064770	71	-	tRNA gene	nuclear encoded tRNA glycine 1 (anticodon TCC)
n-TDgtc3	1	171065358 to 171065429	71	-	tRNA gene	nuclear encoded tRNA aspartic acid 3 (anticodon GTC)
n-TLcag6	1	171065984 to 171066066	82	+	tRNA gene	nuclear encoded tRNA leucine 6 (anticodon CAG)
n-TGgcc12	1	171066631 to 171066701	70	+	tRNA gene	nuclear encoded tRNA glycine 12 (anticodon GCC)
n-TEctc8	1	171071792 to 171071863	71	-	tRNA gene	nuclear encoded tRNA glutamic acid 8 (anticodon CTC)
Gm27552	1	171072226 to 171072287	61	-	miRNA gene	predicted gene, 27552
n-TGtcc5	1	171072334 to 171072405	71	-	tRNA gene	nuclear encoded tRNA glycine 5 (anticodon TCC)
n-TDgtc7	1	171072993 to 171073064	71	-	tRNA gene	nuclear encoded tRNA aspartic acid 7 (anticodon GTC)
n-TLcag7	1	171073619 to 171073701	82	+	tRNA gene	nuclear encoded tRNA leucine 7 (anticodon CAG)
n-TGgcc13	1	171074302 to 171074372	70	+	tRNA gene	nuclear encoded tRNA glycine 13 (anticodon GCC)
Cpgi1006	1	171078614 to 171078784	170		CpG island	CpG island 1006
n-TEctc7	1	171079406 to 171079477	71	-	tRNA gene	nuclear encoded tRNA glutamic acid 7 (anticodon CTC)
Gm27844	1	171079840 to 171079901	61	-	miRNA gene	predicted gene, 27844
n-TGtcc4	1	171079948 to 171080019	71	-	tRNA gene	nuclear encoded tRNA glycine 4 (anticodon TCC)
n-TDgtc6	1	171080607 to 171080678	71	-	tRNA gene	nuclear encoded tRNA aspartic acid 6 (anticodon GTC)
n-TLcag8	1	171081233 to 171081315	82	+	tRNA gene	nuclear encoded tRNA leucine 8 (anticodon CAG)
n-TGgcc14	1	171081876 to 171081946	70	+	tRNA gene	nuclear encoded tRNA glycine 14 (anticodon GCC)