Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171024985-171065055

44 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Del(1Fcgr2b-Fcgr3)1Rav	1	170960558 to 171064935	104377		chromosomal deletion	deletion, Chr 1, Jeffrey V Ravetch 1
Del(1Fcgr2b-Fcgr3)1Vlcg	1	170960558 to 171064935	104377		chromosomal deletion	deletion, Chr1, Regeneron Pharmaceuticals
Fcgr4	1	171018926 to 171029761	10835	+	protein coding gene	Fc receptor, IgG, low affinity IV
Tssr9950	1	171025579 to 171025593	14	+	TSS region	transcription start site region 9950
Tssr9951	1	171027961 to 171027972	11	+	TSS region	transcription start site region 9951
Gm26110	1	171027965 to 171028129	164	+	snRNA gene	predicted gene, 26110
Tssr9952	1	171029237 to 171029255	18	+	TSS region	transcription start site region 9952
Tssr9953	1	171029303 to 171029315	12	+	TSS region	transcription start site region 9953
Tssr9954	1	171029343 to 171029356	13	+	TSS region	transcription start site region 9954
Tssr9955	1	171029366 to 171029385	19	+	TSS region	transcription start site region 9955
Tssr9956	1	171029388 to 171029403	15	+	TSS region	transcription start site region 9956
Tssr9957	1	171029412 to 171029425	13	+	TSS region	transcription start site region 9957
Tssr9958	1	171029431 to 171029438	7	+	TSS region	transcription start site region 9958
Tssr9959	1	171032854 to 171032858	4	+	TSS region	transcription start site region 9959
Cpgi1001	1	171033139 to 171033330	191		CpG island	CpG island 1001
Gm35090	1	171033230 to 171034018	788	-	lncRNA gene	predicted gene, 35090
Cpgi1002	1	171033522 to 171034074	552		CpG island	CpG island 1002
n-TNgtt6	1	171033942 to 171034015	73	-	tRNA gene	nuclear encoded tRNA asparagine 6 (anticodon GTT)
n-TDgtc4	1	171037029 to 171037100	71	-	tRNA gene	nuclear encoded tRNA aspartic acid 4 (anticodon GTC)
n-TGtcc2	1	171037997 to 171038068	71	-	tRNA gene	nuclear encoded tRNA glycine 2 (anticodon TCC)
Cpgi1003	1	171038060 to 171038560	500		CpG island	CpG island 1003
n-TLcag3	1	171038614 to 171038696	82	+	tRNA gene	nuclear encoded tRNA leucine 3 (anticodon CAG)
Alcw1	1	171040785 to 172138790	1098005		QTL	alcohol withdrawal 1
Cpgi1004	1	171044596 to 171044828	232		CpG island	CpG island 1004
n-TGgcc4	1	171044985 to 171045055	70	+	tRNA gene	nuclear encoded tRNA glycine 4 (anticodon GCC)
Fcgr3	1	171051174 to 171064935	13761	-	protein coding gene	Fc receptor, IgG, low affinity III
Szs1	1	171051174 to 174628870	3577696		QTL	seizure susceptibility 1
Qrr1	1	171051174 to 175492500	4441326		QTL	QTL rich region on chromosome 1
Tssr9960	1	171051188 to 171051201	13	+	TSS region	transcription start site region 9960
Tssr9961	1	171051246 to 171051267	21	+	TSS region	transcription start site region 9961
Tssr14968	1	171051821 to 171051864	43	-	TSS region	transcription start site region 14968
Tssr14969	1	171053979 to 171054011	32	-	TSS region	transcription start site region 14969
Tssr14970	1	171057971 to 171057981	10	-	TSS region	transcription start site region 14970
Tssr14971	1	171058038 to 171058060	22	-	TSS region	transcription start site region 14971
Tssr14972	1	171058078 to 171058079	1	-	TSS region	transcription start site region 14972
Tssr14973	1	171058374 to 171058383	9	-	TSS region	transcription start site region 14973
Tssr14974	1	171058605 to 171058637	32	-	TSS region	transcription start site region 14974
Tssr14975	1	171059348 to 171059379	31	-	TSS region	transcription start site region 14975
Tssr14976	1	171059390 to 171059405	15	-	TSS region	transcription start site region 14976
Tssr14977	1	171059589 to 171059595	6	-	TSS region	transcription start site region 14977
Cpgi1005	1	171063753 to 171064053	300		CpG island	CpG island 1005
n-TEctc5	1	171064164 to 171064235	71	-	tRNA gene	nuclear encoded tRNA glutamic acid 5 (anticodon CTC)
Mir6546	1	171064591 to 171064652	61	-	miRNA gene	microRNA 6546
n-TGtcc1	1	171064699 to 171064770	71	-	tRNA gene	nuclear encoded tRNA glycine 1 (anticodon TCC)