Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:171004589-171114595

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(1Fcgr2b-Fcgr3)1Vlcg 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr1, Regeneron Pharmaceuticals
Del(1Fcgr2b-Fcgr3)1Rav 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr 1, Jeffrey V Ravetch 1
Tssr9942 1 171018027 to 171018073 46 + TSS region transcription start site region 9942
Tssr14967 1 171018709 to 171018753 44 - TSS region transcription start site region 14967
Tssr9943 1 171018896 to 171018908 12 + TSS region transcription start site region 9943
Tssr9944 1 171018923 to 171018930 7 + TSS region transcription start site region 9944
Fcgr4 1 171018926 to 171029761 10835 + protein coding gene Fc receptor, IgG, low affinity IV
Tssr9945 1 171018941 to 171018979 38 + TSS region transcription start site region 9945
Tssr9946 1 171019846 to 171019859 13 + TSS region transcription start site region 9946
Tssr9947 1 171019862 to 171019873 11 + TSS region transcription start site region 9947
Tssr9948 1 171019967 to 171019984 17 + TSS region transcription start site region 9948
Tssr9949 1 171023671 to 171023673 2 + TSS region transcription start site region 9949
Tssr9950 1 171025579 to 171025593 14 + TSS region transcription start site region 9950
Tssr9951 1 171027961 to 171027972 11 + TSS region transcription start site region 9951
Gm26110 1 171027965 to 171028129 164 + snRNA gene predicted gene, 26110
Tssr9952 1 171029237 to 171029255 18 + TSS region transcription start site region 9952
Tssr9953 1 171029303 to 171029315 12 + TSS region transcription start site region 9953
Tssr9954 1 171029343 to 171029356 13 + TSS region transcription start site region 9954
Tssr9955 1 171029366 to 171029385 19 + TSS region transcription start site region 9955
Tssr9956 1 171029388 to 171029403 15 + TSS region transcription start site region 9956
Tssr9957 1 171029412 to 171029425 13 + TSS region transcription start site region 9957
Tssr9958 1 171029431 to 171029438 7 + TSS region transcription start site region 9958
Tssr9959 1 171032854 to 171032858 4 + TSS region transcription start site region 9959
Cpgi1001 1 171033139 to 171033330 191 CpG island CpG island 1001
Gm35090 1 171033230 to 171034018 788 - lncRNA gene predicted gene, 35090
Cpgi1002 1 171033522 to 171034074 552 CpG island CpG island 1002
n-TNgtt6 1 171033942 to 171034015 73 - tRNA gene nuclear encoded tRNA asparagine 6 (anticodon GTT)
n-TDgtc4 1 171037029 to 171037100 71 - tRNA gene nuclear encoded tRNA aspartic acid 4 (anticodon GTC)
n-TGtcc2 1 171037997 to 171038068 71 - tRNA gene nuclear encoded tRNA glycine 2 (anticodon TCC)
Cpgi1003 1 171038060 to 171038560 500 CpG island CpG island 1003
n-TLcag3 1 171038614 to 171038696 82 + tRNA gene nuclear encoded tRNA leucine 3 (anticodon CAG)
Alcw1 1 171040785 to 172138790 1098005 QTL alcohol withdrawal 1
Cpgi1004 1 171044596 to 171044828 232 CpG island CpG island 1004
n-TGgcc4 1 171044985 to 171045055 70 + tRNA gene nuclear encoded tRNA glycine 4 (anticodon GCC)
Qrr1 1 171051174 to 175492500 4441326 QTL QTL rich region on chromosome 1
Szs1 1 171051174 to 174628870 3577696 QTL seizure susceptibility 1
Fcgr3 1 171051174 to 171064935 13761 - protein coding gene Fc receptor, IgG, low affinity III
Tssr9960 1 171051188 to 171051201 13 + TSS region transcription start site region 9960
Tssr9961 1 171051246 to 171051267 21 + TSS region transcription start site region 9961
Tssr14968 1 171051821 to 171051864 43 - TSS region transcription start site region 14968
Tssr14969 1 171053979 to 171054011 32 - TSS region transcription start site region 14969
Tssr14970 1 171057971 to 171057981 10 - TSS region transcription start site region 14970
Tssr14971 1 171058038 to 171058060 22 - TSS region transcription start site region 14971
Tssr14972 1 171058078 to 171058079 1 - TSS region transcription start site region 14972
Tssr14973 1 171058374 to 171058383 9 - TSS region transcription start site region 14973
Tssr14974 1 171058605 to 171058637 32 - TSS region transcription start site region 14974
Tssr14975 1 171059348 to 171059379 31 - TSS region transcription start site region 14975
Tssr14976 1 171059390 to 171059405 15 - TSS region transcription start site region 14976
Tssr14977 1 171059589 to 171059595 6 - TSS region transcription start site region 14977
Cpgi1005 1 171063753 to 171064053 300 CpG island CpG island 1005
n-TEctc5 1 171064164 to 171064235 71 - tRNA gene nuclear encoded tRNA glutamic acid 5 (anticodon CTC)
Mir6546 1 171064591 to 171064652 61 - miRNA gene microRNA 6546
n-TGtcc1 1 171064699 to 171064770 71 - tRNA gene nuclear encoded tRNA glycine 1 (anticodon TCC)
n-TDgtc3 1 171065358 to 171065429 71 - tRNA gene nuclear encoded tRNA aspartic acid 3 (anticodon GTC)
n-TLcag6 1 171065984 to 171066066 82 + tRNA gene nuclear encoded tRNA leucine 6 (anticodon CAG)
n-TGgcc12 1 171066631 to 171066701 70 + tRNA gene nuclear encoded tRNA glycine 12 (anticodon GCC)
n-TEctc8 1 171071792 to 171071863 71 - tRNA gene nuclear encoded tRNA glutamic acid 8 (anticodon CTC)
Gm27552 1 171072226 to 171072287 61 - miRNA gene predicted gene, 27552
n-TGtcc5 1 171072334 to 171072405 71 - tRNA gene nuclear encoded tRNA glycine 5 (anticodon TCC)
n-TDgtc7 1 171072993 to 171073064 71 - tRNA gene nuclear encoded tRNA aspartic acid 7 (anticodon GTC)
n-TLcag7 1 171073619 to 171073701 82 + tRNA gene nuclear encoded tRNA leucine 7 (anticodon CAG)
n-TGgcc13 1 171074302 to 171074372 70 + tRNA gene nuclear encoded tRNA glycine 13 (anticodon GCC)
Cpgi1006 1 171078614 to 171078784 170 CpG island CpG island 1006
n-TEctc7 1 171079406 to 171079477 71 - tRNA gene nuclear encoded tRNA glutamic acid 7 (anticodon CTC)
Gm27844 1 171079840 to 171079901 61 - miRNA gene predicted gene, 27844
n-TGtcc4 1 171079948 to 171080019 71 - tRNA gene nuclear encoded tRNA glycine 4 (anticodon TCC)
n-TDgtc6 1 171080607 to 171080678 71 - tRNA gene nuclear encoded tRNA aspartic acid 6 (anticodon GTC)
n-TLcag8 1 171081233 to 171081315 82 + tRNA gene nuclear encoded tRNA leucine 8 (anticodon CAG)
n-TGgcc14 1 171081876 to 171081946 70 + tRNA gene nuclear encoded tRNA glycine 14 (anticodon GCC)
Cpgi1007 1 171085741 to 171086115 374 CpG island CpG island 1007
Tssr14978 1 171089980 to 171089989 9 - TSS region transcription start site region 14978
Tssr14979 1 171101117 to 171101118 1 - TSS region transcription start site region 14979
Cpgi1008 1 171101828 to 171102879 1051 CpG island CpG island 1008
n-TLcag9 1 171101838 to 171101920 82 - tRNA gene nuclear encoded tRNA leucine 9 (anticodon CAG)
n-TDgtc5 1 171102371 to 171102442 71 + tRNA gene nuclear encoded tRNA aspartic acid 5 (anticodon GTC)
n-TGtcc3 1 171102756 to 171102827 71 + tRNA gene nuclear encoded tRNA glycine 3 (anticodon TCC)
n-TEctc6 1 171103043 to 171103114 71 + tRNA gene nuclear encoded tRNA glutamic acid 6 (anticodon CTC)
Cpgi1009 1 171110931 to 171111186 255 CpG island CpG island 1009
n-TVcac6 1 171111443 to 171111515 72 + tRNA gene nuclear encoded tRNA valine 6 (anticodon CAC)
Cpgi1010 1 171113827 to 171114265 438 CpG island CpG island 1010
Cfap126 1 171113918 to 171126967 13049 + protein coding gene cilia and flagella associated protein 126
Tssr14980 1 171113945 to 171113954 9 - TSS region transcription start site region 14980
Tssr9962 1 171113977 to 171114048 71 + TSS region transcription start site region 9962
Tssr9963 1 171114196 to 171114200 4 + TSS region transcription start site region 9963