Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:170223084-170850809

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sle1a 1 168358674 to 170239759 1881085 QTL systematic lupus erythematosus susceptibility 1a
Sh2d1b2 1 170232871 to 170251587 18716 + protein coding gene SH2 domain containing 1B2
D1Mit353 1 170239646 to 170239759 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 353
D1Mit508 1 170239666 to 170239913 247 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 508
Gm6345 1 170254049 to 170255739 1690 - pseudogene predicted gene 6345
Cpgi993 1 170255066 to 170255838 772 CpG island CpG island 993
Tssr14916 1 170255721 to 170255761 40 - TSS region transcription start site region 14916
Sh2d1b1 1 170277324 to 170285662 8338 + protein coding gene SH2 domain containing 1B1
Gm7694 1 170298199 to 170306332 8133 - protein coding gene predicted gene 7694
Tssr9922 1 170308802 to 170308828 26 + TSS region transcription start site region 9922
Tssr9923 1 170308836 to 170308884 48 + TSS region transcription start site region 9923
Spata46 1 170308861 to 170312125 3264 + protein coding gene spermatogenesis associated 46
Tssr9924 1 170308890 to 170308893 3 + TSS region transcription start site region 9924
Tssr9925 1 170309333 to 170309343 10 + TSS region transcription start site region 9925
Tssr14917 1 170312996 to 170312999 3 - TSS region transcription start site region 14917
Nos1ap 1 170314700 to 170589849 275149 - protein coding gene nitric oxide synthase 1 (neuronal) adaptor protein
D1Mit205 1 170413869 to 170414015 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 205
D1Mit455 1 170413888 to 170414012 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 455
Tssr14918 1 170434262 to 170434291 29 - TSS region transcription start site region 14918
D1Mit473 1 170446470 to 170446608 138 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-473
Gm46171 1 170533084 to 170540809 7725 - lncRNA gene predicted gene, 46171
Tssr14919 1 170540814 to 170540818 4 - TSS region transcription start site region 14919
Cpgi994 1 170589011 to 170590273 1262 CpG island CpG island 994
Tssr14920 1 170589751 to 170589769 18 - TSS region transcription start site region 14920
Tssr14921 1 170589791 to 170589854 63 - TSS region transcription start site region 14921
Tssr9926 1 170630909 to 170630911 2 + TSS region transcription start site region 9926
Gm7299 1 170630921 to 170631501 580 + pseudogene predicted gene 7299
Tssr9927 1 170642840 to 170642851 11 + TSS region transcription start site region 9927
Cpgi995 1 170644170 to 170644885 715 CpG island CpG island 995
Tssr14922 1 170644328 to 170644340 12 - TSS region transcription start site region 14922
Tssr280 1 170644344 to 170644351 7 - TSS region transcription start site region 280
Tssr14923 1 170644379 to 170644392 13 - TSS region transcription start site region 14923
Tssr9928 1 170644449 to 170644458 9 + TSS region transcription start site region 9928
Tssr9929 1 170644490 to 170644514 24 + TSS region transcription start site region 9929
Tssr9930 1 170644523 to 170644570 47 + TSS region transcription start site region 9930
Olfml2b 1 170644532 to 170682789 38257 + protein coding gene olfactomedin-like 2B
Tssr9931 1 170644572 to 170644586 14 + TSS region transcription start site region 9931
Tssr9932 1 170644589 to 170644602 13 + TSS region transcription start site region 9932
Tssr9933 1 170644785 to 170644837 52 + TSS region transcription start site region 9933
Tssr281 1 170689997 to 170690025 28 + TSS region transcription start site region 281
Atf6 1 170704674 to 170867771 163097 - protein coding gene activating transcription factor 6
Tssr282 1 170707727 to 170707730 3 + TSS region transcription start site region 282
Tssr283 1 170709794 to 170709805 11 + TSS region transcription start site region 283
Gm23523 1 170751717 to 170751823 106 - snRNA gene predicted gene, 23523
Tssr14924 1 170761839 to 170761840 1 - TSS region transcription start site region 14924
Cpgi996 1 170771627 to 170771785 158 CpG island CpG island 996
Tssr14925 1 170788653 to 170788694 41 - TSS region transcription start site region 14925
Tssr14926 1 170824817 to 170824820 3 - TSS region transcription start site region 14926
Gm25235 1 170832765 to 170832871 106 - snRNA gene predicted gene, 25235
Tssr14927 1 170841771 to 170841790 19 - TSS region transcription start site region 14927
Tssr14928 1 170845787 to 170845800 13 - TSS region transcription start site region 14928
D1Mit270 1 170848421 to 170848536 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 270
Nhdlt1 1 170848421 to 170848536 115 QTL non-HDL cholesterol and triglyceride levels 1
Gm29733 1 170850526 to 170851536 1010 - protein coding gene predicted gene, 29733