Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:170162060-173302114

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1020 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scgq2 1 147249520 to 171804689 24555169 QTL spontaneous crescentic glomerulonephritis QTL 2
Leusq4 1 156774467 to 170976071 14201604 QTL leucocytosis susceptibility QTL 4
Nktcn1 1 168358674 to 171804689 3446015 QTL natural killer T cell numbers 1
Sle1a 1 168358674 to 170239759 1881085 QTL systematic lupus erythematosus susceptibility 1a
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
Uap1 1 170141938 to 170174957 33019 - protein coding gene UDP-N-acetylglucosamine pyrophosphorylase 1
Cpgi991 1 170174277 to 170175586 1309 CpG island CpG island 991
Tssr14906 1 170174781 to 170174796 15 - TSS region transcription start site region 14906
Tssr14907 1 170174816 to 170174827 11 - TSS region transcription start site region 14907
Tssr14908 1 170174884 to 170174899 15 - TSS region transcription start site region 14908
Tssr14909 1 170174900 to 170174951 51 - TSS region transcription start site region 14909
Tssr14910 1 170174959 to 170175001 42 - TSS region transcription start site region 14910
Gm37748 1 170175180 to 170176319 1139 + lincRNA gene predicted gene, 37748
Gm37502 1 170175382 to 170177772 2390 - lincRNA gene predicted gene, 37502
Tssr14911 1 170198767 to 170198791 24 - TSS region transcription start site region 14911
Uhmk1 1 170199256 to 170215435 16179 - protein coding gene U2AF homology motif (UHM) kinase 1
Tssr14912 1 170211743 to 170211746 3 - TSS region transcription start site region 14912
Tssr14913 1 170211768 to 170211775 7 - TSS region transcription start site region 14913
Tssr14914 1 170211779 to 170211785 6 - TSS region transcription start site region 14914
Cpgi992 1 170214730 to 170215479 749 CpG island CpG island 992
Tssr9921 1 170214826 to 170214863 37 + TSS region transcription start site region 9921
4930500M09Rik 1 170214860 to 170216422 1562 + antisense lncRNA gene RIKEN cDNA 4930500M09 gene
Tssr14915 1 170215380 to 170215420 40 - TSS region transcription start site region 14915
Sh2d1b2 1 170232871 to 170251587 18716 + protein coding gene SH2 domain containing 1B2
D1Mit353 1 170239646 to 170239759 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 353
D1Mit508 1 170239666 to 170239913 247 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 508
Gm6345 1 170254049 to 170255739 1690 - pseudogene predicted gene 6345
Cpgi993 1 170255066 to 170255838 772 CpG island CpG island 993
Tssr14916 1 170255721 to 170255761 40 - TSS region transcription start site region 14916
Sh2d1b1 1 170277324 to 170285662 8338 + protein coding gene SH2 domain containing 1B1
Gm7694 1 170298199 to 170306332 8133 - protein coding gene predicted gene 7694
Tssr9922 1 170308802 to 170308828 26 + TSS region transcription start site region 9922
Tssr9923 1 170308836 to 170308884 48 + TSS region transcription start site region 9923
Spata46 1 170308861 to 170312125 3264 + protein coding gene spermatogenesis associated 46
Tssr9924 1 170308890 to 170308893 3 + TSS region transcription start site region 9924
Tssr9925 1 170309333 to 170309343 10 + TSS region transcription start site region 9925
Tssr14917 1 170312996 to 170312999 3 - TSS region transcription start site region 14917
Nos1ap 1 170314700 to 170589849 275149 - protein coding gene nitric oxide synthase 1 (neuronal) adaptor protein
D1Mit205 1 170413869 to 170414015 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 205
D1Mit455 1 170413888 to 170414012 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 455
Tssr14918 1 170434262 to 170434291 29 - TSS region transcription start site region 14918
D1Mit473 1 170446470 to 170446608 138 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-473
Gm46171 1 170533084 to 170540809 7725 - lncRNA gene predicted gene, 46171
Tssr14919 1 170540814 to 170540818 4 - TSS region transcription start site region 14919
Cpgi994 1 170589011 to 170590273 1262 CpG island CpG island 994
Tssr14920 1 170589751 to 170589769 18 - TSS region transcription start site region 14920
Tssr14921 1 170589791 to 170589854 63 - TSS region transcription start site region 14921
Tssr9926 1 170630909 to 170630911 2 + TSS region transcription start site region 9926
Gm7299 1 170630921 to 170631501 580 + pseudogene predicted gene 7299
Tssr9927 1 170642840 to 170642851 11 + TSS region transcription start site region 9927
Cpgi995 1 170644170 to 170644885 715 CpG island CpG island 995
Tssr14922 1 170644328 to 170644340 12 - TSS region transcription start site region 14922
Tssr280 1 170644344 to 170644351 7 - TSS region transcription start site region 280
Tssr14923 1 170644379 to 170644392 13 - TSS region transcription start site region 14923
Tssr9928 1 170644449 to 170644458 9 + TSS region transcription start site region 9928
Tssr9929 1 170644490 to 170644514 24 + TSS region transcription start site region 9929
Tssr9930 1 170644523 to 170644570 47 + TSS region transcription start site region 9930
Olfml2b 1 170644532 to 170682789 38257 + protein coding gene olfactomedin-like 2B
Tssr9931 1 170644572 to 170644586 14 + TSS region transcription start site region 9931
Tssr9932 1 170644589 to 170644602 13 + TSS region transcription start site region 9932
Tssr9933 1 170644785 to 170644837 52 + TSS region transcription start site region 9933
Tssr281 1 170689997 to 170690025 28 + TSS region transcription start site region 281
Atf6 1 170704674 to 170867771 163097 - protein coding gene activating transcription factor 6
Tssr282 1 170707727 to 170707730 3 + TSS region transcription start site region 282
Tssr283 1 170709794 to 170709805 11 + TSS region transcription start site region 283
Gm23523 1 170751717 to 170751823 106 - snRNA gene predicted gene, 23523
Tssr14924 1 170761839 to 170761840 1 - TSS region transcription start site region 14924
Cpgi996 1 170771627 to 170771785 158 CpG island CpG island 996
Tssr14925 1 170788653 to 170788694 41 - TSS region transcription start site region 14925
Tssr14926 1 170824817 to 170824820 3 - TSS region transcription start site region 14926
Gm25235 1 170832765 to 170832871 106 - snRNA gene predicted gene, 25235
Tssr14927 1 170841771 to 170841790 19 - TSS region transcription start site region 14927
Tssr14928 1 170845787 to 170845800 13 - TSS region transcription start site region 14928
D1Mit270 1 170848421 to 170848536 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 270
Nhdlt1 1 170848421 to 170848536 115 QTL non-HDL cholesterol and triglyceride levels 1
Gm29733 1 170850526 to 170851536 1010 - protein coding gene predicted gene, 29733
Tssr14929 1 170857453 to 170857463 10 - TSS region transcription start site region 14929
Tssr14930 1 170857494 to 170857513 19 - TSS region transcription start site region 14930
Cpgi997 1 170867210 to 170867958 748 CpG island CpG island 997
Tssr14931 1 170867733 to 170867742 9 - TSS region transcription start site region 14931
Tssr14932 1 170867745 to 170867756 11 - TSS region transcription start site region 14932
Tssr14933 1 170867761 to 170867784 23 - TSS region transcription start site region 14933
Tssr14934 1 170867789 to 170867800 11 - TSS region transcription start site region 14934
Tssr14935 1 170867803 to 170867814 11 - TSS region transcription start site region 14935
Tssr14936 1 170868605 to 170868639 34 - TSS region transcription start site region 14936
Gm9929 1 170868645 to 170881721 13076 + unclassified non-coding RNA gene predicted gene 9929
Cpgi998 1 170868661 to 170868991 330 CpG island CpG island 998
Tssr9934 1 170868676 to 170868707 31 + TSS region transcription start site region 9934
Tssr9935 1 170868708 to 170868720 12 + TSS region transcription start site region 9935
Dusp12 1 170874187 to 170885878 11691 - protein coding gene dual specificity phosphatase 12
Cpgi999 1 170884830 to 170885579 749 CpG island CpG island 999
Gm26620 1 170885065 to 170885881 816 + protein coding gene predicted gene, 26620
Tssr9936 1 170885083 to 170885098 15 + TSS region transcription start site region 9936
Tssr14937 1 170885142 to 170885198 56 - TSS region transcription start site region 14937
Opefa 1 170885284 to 170885284 0 QTL open field activity
Tssr14938 1 170885388 to 170885446 58 - TSS region transcription start site region 14938
Tssr14939 1 170885452 to 170885467 15 - TSS region transcription start site region 14939
Tssr14940 1 170906994 to 170906998 4 - TSS region transcription start site region 14940
Fcrlb 1 170907273 to 170912941 5668 - protein coding gene Fc receptor-like B
Cpgi1000 1 170907291 to 170908922 1631 CpG island CpG island 1000
Tssr14941 1 170913665 to 170913668 3 - TSS region transcription start site region 14941
Tssr14942 1 170913682 to 170913703 21 - TSS region transcription start site region 14942
Tssr14943 1 170913716 to 170913749 33 - TSS region transcription start site region 14943
Tssr14944 1 170913754 to 170913759 5 - TSS region transcription start site region 14944
Fcrla 1 170917594 to 170927583 9989 - protein coding gene Fc receptor-like A
Gm2962 1 170925309 to 170925644 335 - pseudogene predicted pseudogene 2962
Tssr14945 1 170925656 to 170925659 3 - TSS region transcription start site region 14945
Tssr14946 1 170927519 to 170927531 12 - TSS region transcription start site region 14946
Tssr14947 1 170927540 to 170927566 26 - TSS region transcription start site region 14947
Tssr14948 1 170927567 to 170927583 16 - TSS region transcription start site region 14948
Gm37030 1 170935771 to 170936065 294 + pseudogene predicted gene, 37030
Gm39701 1 170945108 to 170949763 4655 + protein coding gene predicted gene, 39701
Tssr14949 1 170958895 to 170958917 22 - TSS region transcription start site region 14949
Tssr14950 1 170959739 to 170959771 32 - TSS region transcription start site region 14950
Tssr14951 1 170959817 to 170959840 23 - TSS region transcription start site region 14951
Tssr284 1 170959894 to 170959899 5 - TSS region transcription start site region 284
Tssr14952 1 170960074 to 170960085 11 - TSS region transcription start site region 14952
Tssr14953 1 170960089 to 170960100 11 - TSS region transcription start site region 14953
Fcgr2b 1 170960558 to 170976071 15513 - protein coding gene Fc receptor, IgG, low affinity IIb
Del(1Fcgr2b-Fcgr3)1Rav 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr 1, Jeffrey V Ravetch 1
Del(1Fcgr2b-Fcgr3)1Vlcg 1 170960558 to 171064935 104377 chromosomal deletion deletion, Chr1, Regeneron Pharmaceuticals
Tssr14954 1 170960856 to 170960867 11 - TSS region transcription start site region 14954
Tssr14955 1 170961085 to 170961105 20 - TSS region transcription start site region 14955
D1Mit147 1 170964737 to 170965077 340 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 147
Tssr14956 1 170965795 to 170965811 16 - TSS region transcription start site region 14956
Tssr14957 1 170966485 to 170966523 38 - TSS region transcription start site region 14957
Tssr14958 1 170968204 to 170968225 21 - TSS region transcription start site region 14958
D1Dcr16 1 170969863 to 170969965 102 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 16
D1Mit148 1 170969883 to 170970001 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 148
Tssr14959 1 170971959 to 170971961 2 - TSS region transcription start site region 14959
Tssr14960 1 170972859 to 170972867 8 - TSS region transcription start site region 14960
Gm38204 1 170973373 to 170977746 4373 + antisense lncRNA gene predicted gene, 38204
Tssr14961 1 170976004 to 170976015 11 - TSS region transcription start site region 14961
Tssr14962 1 170976023 to 170976038 15 - TSS region transcription start site region 14962
Tssr14963 1 170976044 to 170976106 62 - TSS region transcription start site region 14963
Tssr14964 1 170976112 to 170976120 8 - TSS region transcription start site region 14964
Tssr14965 1 170976567 to 170976608 41 - TSS region transcription start site region 14965
Gm34968 1 170977128 to 170979021 1893 - lncRNA gene predicted gene, 34968
Tssr14966 1 170978614 to 170978643 29 - TSS region transcription start site region 14966
Tssr9937 1 170978806 to 170978817 11 + TSS region transcription start site region 9937
Tssr9938 1 170979765 to 170979770 5 + TSS region transcription start site region 9938
Gm10522 1 170983859 to 170986466 2607 + lincRNA gene predicted gene 10522
Tssr9939 1 170985370 to 170985378 8 + TSS region transcription start site region 9939
Tssr9940 1 170986019 to 170986023 4 + TSS region transcription start site region 9940
D1Mit146 1 170995618 to 170995737 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 146
D1Dcr17 1 170995633 to 170995726 93 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 17
Tssr9941 1 170998565 to 170998594 29 + TSS region transcription start site region 9941
Tssr9942 1 171018027 to 171018073 46 + TSS region transcription start site region 9942
Tssr14967 1 171018709 to 171018753 44 - TSS region transcription start site region 14967
Tssr9943 1 171018896 to 171018908 12 + TSS region transcription start site region 9943
Tssr9944 1 171018923 to 171018930 7 + TSS region transcription start site region 9944
Fcgr4 1 171018926 to 171029761 10835 + protein coding gene Fc receptor, IgG, low affinity IV
Tssr9945 1 171018941 to 171018979 38 + TSS region transcription start site region 9945
Tssr9946 1 171019846 to 171019859 13 + TSS region transcription start site region 9946
Tssr9947 1 171019862 to 171019873 11 + TSS region transcription start site region 9947
Tssr9948 1 171019967 to 171019984 17 + TSS region transcription start site region 9948
Tssr9949 1 171023671 to 171023673 2 + TSS region transcription start site region 9949
Tssr9950 1 171025579 to 171025593 14 + TSS region transcription start site region 9950
Tssr9951 1 171027961 to 171027972 11 + TSS region transcription start site region 9951
Gm26110 1 171027965 to 171028129 164 + snRNA gene predicted gene, 26110
Tssr9952 1 171029237 to 171029255 18 + TSS region transcription start site region 9952
Tssr9953 1 171029303 to 171029315 12 + TSS region transcription start site region 9953
Tssr9954 1 171029343 to 171029356 13 + TSS region transcription start site region 9954
Tssr9955 1 171029366 to 171029385 19 + TSS region transcription start site region 9955
Tssr9956 1 171029388 to 171029403 15 + TSS region transcription start site region 9956
Tssr9957 1 171029412 to 171029425 13 + TSS region transcription start site region 9957
Tssr9958 1 171029431 to 171029438 7 + TSS region transcription start site region 9958
Tssr9959 1 171032854 to 171032858 4 + TSS region transcription start site region 9959
Cpgi1001 1 171033139 to 171033330 191 CpG island CpG island 1001
Gm35090 1 171033230 to 171034018 788 - lncRNA gene predicted gene, 35090
Cpgi1002 1 171033522 to 171034074 552 CpG island CpG island 1002
n-TNgtt6 1 171033942 to 171034015 73 - tRNA gene nuclear encoded tRNA asparagine 6 (anticodon GTT)
n-TDgtc4 1 171037029 to 171037100 71 - tRNA gene nuclear encoded tRNA aspartic acid 4 (anticodon GTC)
n-TGtcc2 1 171037997 to 171038068 71 - tRNA gene nuclear encoded tRNA glycine 2 (anticodon TCC)
Cpgi1003 1 171038060 to 171038560 500 CpG island CpG island 1003
n-TLcag3 1 171038614 to 171038696 82 + tRNA gene nuclear encoded tRNA leucine 3 (anticodon CAG)
Alcw1 1 171040785 to 172138790 1098005 QTL alcohol withdrawal 1
Cpgi1004 1 171044596 to 171044828 232 CpG island CpG island 1004
n-TGgcc4 1 171044985 to 171045055 70 + tRNA gene nuclear encoded tRNA glycine 4 (anticodon GCC)
Fcgr3 1 171051174 to 171064935 13761 - protein coding gene Fc receptor, IgG, low affinity III
Qrr1 1 171051174 to 175492500 4441326 QTL QTL rich region on chromosome 1
Szs1 1 171051174 to 174628870 3577696 QTL seizure susceptibility 1
Tssr9960 1 171051188 to 171051201 13 + TSS region transcription start site region 9960
Tssr9961 1 171051246 to 171051267 21 + TSS region transcription start site region 9961
Tssr14968 1 171051821 to 171051864 43 - TSS region transcription start site region 14968
Tssr14969 1 171053979 to 171054011 32 - TSS region transcription start site region 14969
Tssr14970 1 171057971 to 171057981 10 - TSS region transcription start site region 14970
Tssr14971 1 171058038 to 171058060 22 - TSS region transcription start site region 14971
Tssr14972 1 171058078 to 171058079 1 - TSS region transcription start site region 14972
Tssr14973 1 171058374 to 171058383 9 - TSS region transcription start site region 14973
Tssr14974 1 171058605 to 171058637 32 - TSS region transcription start site region 14974
Tssr14975 1 171059348 to 171059379 31 - TSS region transcription start site region 14975
Tssr14976 1 171059390 to 171059405 15 - TSS region transcription start site region 14976
Tssr14977 1 171059589 to 171059595 6 - TSS region transcription start site region 14977
Cpgi1005 1 171063753 to 171064053 300 CpG island CpG island 1005
n-TEctc5 1 171064164 to 171064235 71 - tRNA gene nuclear encoded tRNA glutamic acid 5 (anticodon CTC)
Mir6546 1 171064591 to 171064652 61 - miRNA gene microRNA 6546
n-TGtcc1 1 171064699 to 171064770 71 - tRNA gene nuclear encoded tRNA glycine 1 (anticodon TCC)
n-TDgtc3 1 171065358 to 171065429 71 - tRNA gene nuclear encoded tRNA aspartic acid 3 (anticodon GTC)
n-TLcag6 1 171065984 to 171066066 82 + tRNA gene nuclear encoded tRNA leucine 6 (anticodon CAG)