Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:169933869-170894015

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sle1a 1 168358674 to 170239759 1881085 QTL systematic lupus erythematosus susceptibility 1a
Ccdc190 1 169928648 to 169934653 6005 + protein coding gene coiled-coil domain containing 190
Gm15852 1 169932698 to 169934248 1550 - unclassified non-coding RNA gene predicted gene 15852
Hsd17b7 1 169949535 to 169969240 19705 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 7
Cpgi990 1 169968826 to 169969462 636 CpG island CpG island 990
Tssr14894 1 169969143 to 169969218 75 - TSS region transcription start site region 14894
3110045C21Rik 1 169969409 to 169972396 2987 + antisense lncRNA gene RIKEN cDNA 3110045C21 gene
Tssr9919 1 169969428 to 169969454 26 + TSS region transcription start site region 9919
Tssr9920 1 169969765 to 169969773 8 + TSS region transcription start site region 9920
Ddr2 1 169972307 to 170110762 138455 - protein coding gene discoidin domain receptor family, member 2
Tssr14895 1 169974989 to 169975003 14 - TSS region transcription start site region 14895
Tssr14896 1 169975025 to 169975038 13 - TSS region transcription start site region 14896
Tssr278 1 170016244 to 170016246 2 + TSS region transcription start site region 278
Tssr14897 1 170110315 to 170110332 17 - TSS region transcription start site region 14897
Tssr14898 1 170110425 to 170110440 15 - TSS region transcription start site region 14898
Tssr14899 1 170110441 to 170110480 39 - TSS region transcription start site region 14899
Tssr14900 1 170110491 to 170110532 41 - TSS region transcription start site region 14900
Tssr14901 1 170110723 to 170110729 6 - TSS region transcription start site region 14901
Tssr14902 1 170110744 to 170110823 79 - TSS region transcription start site region 14902
Tssr14903 1 170110829 to 170110834 5 - TSS region transcription start site region 14903
Tssr279 1 170111070 to 170111086 16 - TSS region transcription start site region 279
Tssr14904 1 170111177 to 170111214 37 - TSS region transcription start site region 14904
Tssr14905 1 170111416 to 170111427 11 - TSS region transcription start site region 14905
Uap1 1 170141938 to 170174957 33019 - protein coding gene UDP-N-acetylglucosamine pyrophosphorylase 1
Cpgi991 1 170174277 to 170175586 1309 CpG island CpG island 991
Tssr14906 1 170174781 to 170174796 15 - TSS region transcription start site region 14906
Tssr14907 1 170174816 to 170174827 11 - TSS region transcription start site region 14907
Tssr14908 1 170174884 to 170174899 15 - TSS region transcription start site region 14908
Tssr14909 1 170174900 to 170174951 51 - TSS region transcription start site region 14909
Tssr14910 1 170174959 to 170175001 42 - TSS region transcription start site region 14910
Gm37748 1 170175180 to 170176319 1139 + lincRNA gene predicted gene, 37748
Gm37502 1 170175382 to 170177772 2390 - lincRNA gene predicted gene, 37502
Tssr14911 1 170198767 to 170198791 24 - TSS region transcription start site region 14911
Uhmk1 1 170199256 to 170215435 16179 - protein coding gene U2AF homology motif (UHM) kinase 1
Tssr14912 1 170211743 to 170211746 3 - TSS region transcription start site region 14912
Tssr14913 1 170211768 to 170211775 7 - TSS region transcription start site region 14913
Tssr14914 1 170211779 to 170211785 6 - TSS region transcription start site region 14914
Cpgi992 1 170214730 to 170215479 749 CpG island CpG island 992
Tssr9921 1 170214826 to 170214863 37 + TSS region transcription start site region 9921
4930500M09Rik 1 170214860 to 170216422 1562 + antisense lncRNA gene RIKEN cDNA 4930500M09 gene
Tssr14915 1 170215380 to 170215420 40 - TSS region transcription start site region 14915
Sh2d1b2 1 170232871 to 170251587 18716 + protein coding gene SH2 domain containing 1B2
D1Mit353 1 170239646 to 170239759 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 353
D1Mit508 1 170239666 to 170239913 247 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 508
Gm6345 1 170254049 to 170255739 1690 - pseudogene predicted gene 6345
Cpgi993 1 170255066 to 170255838 772 CpG island CpG island 993
Tssr14916 1 170255721 to 170255761 40 - TSS region transcription start site region 14916
Sh2d1b1 1 170277324 to 170285662 8338 + protein coding gene SH2 domain containing 1B1
Gm7694 1 170298199 to 170306332 8133 - protein coding gene predicted gene 7694
Tssr9922 1 170308802 to 170308828 26 + TSS region transcription start site region 9922
Tssr9923 1 170308836 to 170308884 48 + TSS region transcription start site region 9923
Spata46 1 170308861 to 170312125 3264 + protein coding gene spermatogenesis associated 46
Tssr9924 1 170308890 to 170308893 3 + TSS region transcription start site region 9924
Tssr9925 1 170309333 to 170309343 10 + TSS region transcription start site region 9925
Tssr14917 1 170312996 to 170312999 3 - TSS region transcription start site region 14917
Nos1ap 1 170314700 to 170589849 275149 - protein coding gene nitric oxide synthase 1 (neuronal) adaptor protein
D1Mit205 1 170413869 to 170414015 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 205
D1Mit455 1 170413888 to 170414012 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 455
Tssr14918 1 170434262 to 170434291 29 - TSS region transcription start site region 14918
D1Mit473 1 170446470 to 170446608 138 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-473
Gm46171 1 170533084 to 170540809 7725 - lncRNA gene predicted gene, 46171
Tssr14919 1 170540814 to 170540818 4 - TSS region transcription start site region 14919
Cpgi994 1 170589011 to 170590273 1262 CpG island CpG island 994
Tssr14920 1 170589751 to 170589769 18 - TSS region transcription start site region 14920
Tssr14921 1 170589791 to 170589854 63 - TSS region transcription start site region 14921
Tssr9926 1 170630909 to 170630911 2 + TSS region transcription start site region 9926
Gm7299 1 170630921 to 170631501 580 + pseudogene predicted gene 7299
Tssr9927 1 170642840 to 170642851 11 + TSS region transcription start site region 9927
Cpgi995 1 170644170 to 170644885 715 CpG island CpG island 995
Tssr14922 1 170644328 to 170644340 12 - TSS region transcription start site region 14922
Tssr280 1 170644344 to 170644351 7 - TSS region transcription start site region 280
Tssr14923 1 170644379 to 170644392 13 - TSS region transcription start site region 14923
Tssr9928 1 170644449 to 170644458 9 + TSS region transcription start site region 9928
Tssr9929 1 170644490 to 170644514 24 + TSS region transcription start site region 9929
Tssr9930 1 170644523 to 170644570 47 + TSS region transcription start site region 9930
Olfml2b 1 170644532 to 170682789 38257 + protein coding gene olfactomedin-like 2B
Tssr9931 1 170644572 to 170644586 14 + TSS region transcription start site region 9931
Tssr9932 1 170644589 to 170644602 13 + TSS region transcription start site region 9932
Tssr9933 1 170644785 to 170644837 52 + TSS region transcription start site region 9933
Tssr281 1 170689997 to 170690025 28 + TSS region transcription start site region 281
Atf6 1 170704674 to 170867771 163097 - protein coding gene activating transcription factor 6
Tssr282 1 170707727 to 170707730 3 + TSS region transcription start site region 282
Tssr283 1 170709794 to 170709805 11 + TSS region transcription start site region 283
Gm23523 1 170751717 to 170751823 106 - snRNA gene predicted gene, 23523
Tssr14924 1 170761839 to 170761840 1 - TSS region transcription start site region 14924
Cpgi996 1 170771627 to 170771785 158 CpG island CpG island 996
Tssr14925 1 170788653 to 170788694 41 - TSS region transcription start site region 14925
Tssr14926 1 170824817 to 170824820 3 - TSS region transcription start site region 14926
Gm25235 1 170832765 to 170832871 106 - snRNA gene predicted gene, 25235
Tssr14927 1 170841771 to 170841790 19 - TSS region transcription start site region 14927
Tssr14928 1 170845787 to 170845800 13 - TSS region transcription start site region 14928
D1Mit270 1 170848421 to 170848536 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 270
Nhdlt1 1 170848421 to 170848536 115 QTL non-HDL cholesterol and triglyceride levels 1
Gm29733 1 170850526 to 170851536 1010 - protein coding gene predicted gene, 29733
Tssr14929 1 170857453 to 170857463 10 - TSS region transcription start site region 14929
Tssr14930 1 170857494 to 170857513 19 - TSS region transcription start site region 14930
Cpgi997 1 170867210 to 170867958 748 CpG island CpG island 997
Tssr14931 1 170867733 to 170867742 9 - TSS region transcription start site region 14931
Tssr14932 1 170867745 to 170867756 11 - TSS region transcription start site region 14932
Tssr14933 1 170867761 to 170867784 23 - TSS region transcription start site region 14933
Tssr14934 1 170867789 to 170867800 11 - TSS region transcription start site region 14934
Tssr14935 1 170867803 to 170867814 11 - TSS region transcription start site region 14935
Tssr14936 1 170868605 to 170868639 34 - TSS region transcription start site region 14936
Gm9929 1 170868645 to 170881721 13076 + unclassified non-coding RNA gene predicted gene 9929
Cpgi998 1 170868661 to 170868991 330 CpG island CpG island 998
Tssr9934 1 170868676 to 170868707 31 + TSS region transcription start site region 9934
Tssr9935 1 170868708 to 170868720 12 + TSS region transcription start site region 9935
Dusp12 1 170874187 to 170885878 11691 - protein coding gene dual specificity phosphatase 12
Cpgi999 1 170884830 to 170885579 749 CpG island CpG island 999
Gm26620 1 170885065 to 170885881 816 + protein coding gene predicted gene, 26620
Tssr9936 1 170885083 to 170885098 15 + TSS region transcription start site region 9936
Tssr14937 1 170885142 to 170885198 56 - TSS region transcription start site region 14937
Opefa 1 170885284 to 170885284 0 QTL open field activity
Tssr14938 1 170885388 to 170885446 58 - TSS region transcription start site region 14938
Tssr14939 1 170885452 to 170885467 15 - TSS region transcription start site region 14939