Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:16915191-19345902

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28376 1 16898185 to 17091631 193446 + antisense lncRNA gene predicted gene 28376
4921511E07Rik 1 16930970 to 16931796 826 + unclassified gene RIKEN cDNA 4921511E07 gene
Jph1 1 16964560 to 17097889 133329 - protein coding gene junctophilin 1
Tssr11056 1 16996937 to 16996940 3 - TSS region transcription start site region 11056
Tssr11057 1 17015452 to 17015456 4 - TSS region transcription start site region 11057
Tssr11058 1 17082458 to 17082462 4 - TSS region transcription start site region 11058
Cpgi59 1 17091546 to 17092089 543 CpG island CpG island 59
Cpgi60 1 17096653 to 17098194 1541 CpG island CpG island 60
Tssr11059 1 17097708 to 17097713 5 - TSS region transcription start site region 11059
Tssr15 1 17097749 to 17097753 4 - TSS region transcription start site region 15
Tssr11060 1 17097798 to 17097806 8 - TSS region transcription start site region 11060
Tssr11061 1 17097839 to 17097872 33 - TSS region transcription start site region 11061
Gm46085 1 17097969 to 17100793 2824 + lncRNA gene predicted gene, 46085
Tssr6015 1 17098090 to 17098130 40 + TSS region transcription start site region 6015
Gm31982 1 17098573 to 17124568 25995 - lncRNA gene predicted gene, 31982
Gm28783 1 17124747 to 17128956 4209 + lincRNA gene predicted gene 28783
Cpgi61 1 17145342 to 17145799 457 CpG island CpG island 61
Tssr6016 1 17145357 to 17145431 74 + TSS region transcription start site region 6016
Gdap1 1 17145373 to 17164271 18898 + protein coding gene ganglioside-induced differentiation-associated-protein 1
Gm28784 1 17168403 to 17173103 4700 + lincRNA gene predicted gene 28784
Gm39597 1 17202970 to 17205577 2607 + lncRNA gene predicted gene, 39597
Gm28785 1 17250114 to 17250492 378 - pseudogene predicted gene 28785
Tssr11062 1 17267033 to 17267039 6 - TSS region transcription start site region 11062
Gm5251 1 17394958 to 17395429 471 + pseudogene predicted gene 5251
Rbm6-ps1 1 17397412 to 17400281 2869 - pseudogene RNA binding motif protein 6, pseudogene 1
Gm6075 1 17429043 to 17429528 485 - pseudogene predicted gene 6075
Tssr11063 1 17429574 to 17429575 1 - TSS region transcription start site region 11063
Tssr16 1 17505270 to 17505272 2 + TSS region transcription start site region 16
Gm25166 1 17520001 to 17520111 110 + snoRNA gene predicted gene, 25166
Tssr6017 1 17601842 to 17601859 17 + TSS region transcription start site region 6017
Tssr6018 1 17601893 to 17601913 20 + TSS region transcription start site region 6018
Pi15 1 17601901 to 17630939 29038 + protein coding gene peptidase inhibitor 15
Tssr6019 1 17601914 to 17601934 20 + TSS region transcription start site region 6019
Tssr6020 1 17601951 to 17601954 3 + TSS region transcription start site region 6020
Gm28154 1 17615084 to 17641081 25997 - antisense lncRNA gene predicted gene 28154
Tssr6021 1 17629050 to 17629065 15 + TSS region transcription start site region 6021
Gm16070 1 17676027 to 17727646 51619 - antisense lncRNA gene predicted gene 16070
Tssr6022 1 17727034 to 17727061 27 + TSS region transcription start site region 6022
Crispld1 1 17727045 to 17766344 39299 + protein coding gene cysteine-rich secretory protein LCCL domain containing 1
Tssr6023 1 17727381 to 17727391 10 + TSS region transcription start site region 6023
Tssr6024 1 17727409 to 17727424 15 + TSS region transcription start site region 6024
Gm28153 1 17741915 to 17805417 63502 - antisense lncRNA gene predicted gene 28153
Tssr6025 1 17946997 to 17947007 10 + TSS region transcription start site region 6025
Gm7690 1 17947041 to 17948439 1398 + pseudogene predicted gene 7690
Gm18775 1 17993010 to 17999622 6612 - pseudogene predicted gene, 18775
Gm17969 1 17993825 to 17997483 3658 + pseudogene predicted gene, 17969
Gm28756 1 17994462 to 18059056 64594 - unclassified non-coding RNA gene predicted gene 28756
Gm28755 1 18005961 to 18016186 10225 - pseudogene predicted gene 28755
Gm45784 1 18048100 to 18058269 10169 - pseudogene predicted gene 45784
Cpgi62 1 18057728 to 18059061 1333 CpG island CpG island 62
Tssr11064 1 18058788 to 18058802 14 - TSS region transcription start site region 11064
Crisp4 1 18115191 to 18145902 30711 - protein coding gene cysteine-rich secretory protein 4
Tssr11065 1 18145895 to 18145922 27 - TSS region transcription start site region 11065
Defb44-ps 1 18210053 to 18223564 13511 - pseudogene defensin beta 44, pseudogene
Tssr11066 1 18223570 to 18223582 12 - TSS region transcription start site region 11066
Tssr11067 1 18223603 to 18223608 5 - TSS region transcription start site region 11067
Defb18 1 18236473 to 18237443 970 - protein coding gene defensin beta 18
Tssr11068 1 18237473 to 18237478 5 - TSS region transcription start site region 11068
D1Ertd230e 1 18247918 to 18248152 234 DNA segment DNA segment, Chr 1, ERATO Doi 230, expressed
Defb41 1 18250980 to 18265138 14158 - protein coding gene defensin beta 41
Gm17837 1 18262395 to 18263379 984 - pseudogene predicted gene, 17837
Tssr11069 1 18265130 to 18265141 11 - TSS region transcription start site region 11069
D1Mit230 1 18333801 to 18333927 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 230
Gm5252 1 18708428 to 18709336 908 + pseudogene predicted gene 5252
Gm24075 1 18969762 to 18969833 71 - snoRNA gene predicted gene, 24075
Gm28343 1 19037266 to 19037377 111 + pseudogene predicted gene 28343
Gm28344 1 19062857 to 19063135 278 + pseudogene predicted gene 28344
Gm15825 1 19063300 to 19075464 12164 - antisense lncRNA gene predicted gene 15825
Cpgi63 1 19096944 to 19097168 224 CpG island CpG island 63
Tfap2d 1 19103022 to 19166346 63324 + protein coding gene transcription factor AP-2, delta
Tssr6026 1 19103031 to 19103043 12 + TSS region transcription start site region 6026
Cpgi64 1 19104091 to 19104915 824 CpG island CpG island 64
Tssr6027 1 19104131 to 19104138 7 + TSS region transcription start site region 6027
Tssr6028 1 19104173 to 19104188 15 + TSS region transcription start site region 6028
Tssr6029 1 19104688 to 19104693 5 + TSS region transcription start site region 6029
Gm10075 1 19153422 to 19153966 544 - pseudogene predicted gene 10075
D1Mit298 1 19182865 to 19183007 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 298
Tfap2b 1 19208914 to 19238576 29662 + protein coding gene transcription factor AP-2 beta
Tssr6030 1 19208940 to 19208967 27 + TSS region transcription start site region 6030
Tssr6031 1 19208983 to 19208994 11 + TSS region transcription start site region 6031
Tssr6032 1 19208998 to 19209011 13 + TSS region transcription start site region 6032
Tssr6033 1 19209014 to 19209033 19 + TSS region transcription start site region 6033
Tssr6034 1 19209038 to 19209053 15 + TSS region transcription start site region 6034
Tssr6035 1 19209070 to 19209089 19 + TSS region transcription start site region 6035
Tssr6036 1 19209094 to 19209101 7 + TSS region transcription start site region 6036
Tssr6037 1 19209112 to 19209126 14 + TSS region transcription start site region 6037
Tssr6038 1 19209140 to 19209153 13 + TSS region transcription start site region 6038
Tssr6039 1 19209155 to 19209177 22 + TSS region transcription start site region 6039
Cpgi65 1 19209681 to 19210435 754 CpG island CpG island 65
Tssr6040 1 19212104 to 19212106 2 + TSS region transcription start site region 6040
Tssr6041 1 19212271 to 19212273 2 + TSS region transcription start site region 6041
Tssr6042 1 19212445 to 19212468 23 + TSS region transcription start site region 6042
Cpgi66 1 19213877 to 19214474 597 CpG island CpG island 66
Cpgi67 1 19234063 to 19234330 267 CpG island CpG island 67
Tssr6043 1 19235326 to 19235332 6 + TSS region transcription start site region 6043
Tssr6044 1 19235493 to 19235503 10 + TSS region transcription start site region 6044
Tssr6045 1 19235769 to 19235782 13 + TSS region transcription start site region 6045
Cpgi68 1 19236530 to 19236897 367 CpG island CpG island 68
Tssr6046 1 19237406 to 19237417 11 + TSS region transcription start site region 6046
Tssr6047 1 19237601 to 19237612 11 + TSS region transcription start site region 6047
Gm28340 1 19242725 to 19243769 1044 + lincRNA gene predicted gene 28340
Gm28341 1 19320226 to 19320697 471 - pseudogene predicted gene 28341
Gm4849 1 19330939 to 19333184 2245 + pseudogene predicted gene 4849
Tssr11070 1 19337537 to 19337541 4 - TSS region transcription start site region 11070