Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:168747934-170281464

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd3k 1 147249520 to 169211344 21961824 QTL Nidd3 on KK-A
Cfcd 1 168000922 to 169211344 1210422 QTL contextual fear conditioning
Sle1a 1 168358674 to 170239759 1881085 QTL systematic lupus erythematosus susceptibility 1a
D1Mit540.1 1 168755783 to 168755928 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 540.1
D1Mit540 1 168755906 to 168756030 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 540
Tssr14887 1 168873727 to 168873734 7 - TSS region transcription start site region 14887
D1Mit114 1 168891415 to 168891558 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 114
D1Mit112 1 168964995 to 168965172 177 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 112
Nba2 1 169007542 to 169007711 169 QTL New Zealand Black autoimmunity 2
D1Mit111 1 169007542 to 169007711 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 111
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
Mir6354 1 169018974 to 169019089 115 - miRNA gene microRNA 6354
Tssr14888 1 169046869 to 169046878 9 - TSS region transcription start site region 14888
Tssr14889 1 169046891 to 169046896 5 - TSS region transcription start site region 14889
Tssr14890 1 169087599 to 169087601 2 - TSS region transcription start site region 14890
Gm39697 1 169128222 to 169172873 44651 - lncRNA gene predicted gene, 39697
Cfmq1 1 169211172 to 169211344 172 QTL cystic fibrosis modifier QTL 1
D1Mit36 1 169211172 to 169211344 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 36
Cgnz1 1 169211172 to 169211344 172 QTL chronic glomerulonephritis in NZM 1
Lprq3 1 169211172 to 169211344 172 QTL lipoprotein QTL 3
Bbaa30 1 169211172 to 174628870 5417698 QTL B.burgdorferi-associated arthritis 30
Lbw7 1 169211172 to 169211344 172 QTL lupus NZB x NZW 7
Sle16 1 169211172 to 177550021 8338849 QTL systematic lupus erythematosus susceptibility 16
Sle1 1 169211172 to 169211344 172 QTL systemic lupus erythmatosus susceptibility 1
D1Mit402 1 169251917 to 169252020 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 402
Gm34421 1 169254610 to 169260876 6266 + lncRNA gene predicted gene, 34421
Hdlq107 1 169305175 to 169305175 0 QTL HDL QTL 107
Ewc1 1 169305175 to 169305175 0 QTL ethanol withdrawal and consumption 1
Tcq11 1 169310000 to 179820000 10510000 QTL total cholesterol QTL 11
Gm37839 1 169328529 to 169347632 19103 - lincRNA gene predicted gene, 37839
Gm34477 1 169364509 to 169370283 5774 + lncRNA gene predicted gene, 34477
Gm5265 1 169453528 to 169453869 341 - pseudogene predicted pseudogene 5265
Gm34535 1 169462966 to 169470755 7789 + lncRNA gene predicted gene, 34535
Nuf2 1 169497934 to 169531464 33530 - protein coding gene NUF2, NDC80 kinetochore complex component
Cpgi989 1 169531199 to 169531707 508 CpG island CpG island 989
Tssr14891 1 169531343 to 169531437 94 - TSS region transcription start site region 14891
Tssr14892 1 169531447 to 169531460 13 - TSS region transcription start site region 14892
Gm34624 1 169531526 to 169542467 10941 + lncRNA gene predicted gene, 34624
Gm18900 1 169591549 to 169592132 583 - pseudogene predicted gene, 18900
Gm36980 1 169595784 to 169596939 1155 - pseudogene predicted gene, 36980
Tssr9914 1 169655493 to 169655508 15 + TSS region transcription start site region 9914
Rgs5 1 169655501 to 169695813 40312 + protein coding gene regulator of G-protein signaling 5
Tssr9915 1 169692573 to 169692578 5 + TSS region transcription start site region 9915
Tssr9916 1 169693666 to 169693695 29 + TSS region transcription start site region 9916
Tssr9917 1 169693827 to 169693847 20 + TSS region transcription start site region 9917
Tssr276 1 169694030 to 169694055 25 + TSS region transcription start site region 276
Rgs4 1 169741477 to 169747642 6165 - protein coding gene regulator of G-protein signaling 4
Tssr14893 1 169747634 to 169747649 15 - TSS region transcription start site region 14893
Gm39698 1 169748473 to 169756950 8477 - lncRNA gene predicted gene, 39698
Gm22114 1 169799450 to 169799556 106 - snRNA gene predicted gene, 22114
D1Mit524 1 169843673 to 169843787 114 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-524
Gm37586 1 169853548 to 169853751 203 + pseudogene predicted gene, 37586
Gm39699 1 169926029 to 169928588 2559 + lncRNA gene predicted gene, 39699
Ccdc190 1 169928648 to 169934653 6005 + protein coding gene coiled-coil domain containing 190
Tssr9918 1 169928807 to 169928815 8 + TSS region transcription start site region 9918
Tssr277 1 169930094 to 169930136 42 + TSS region transcription start site region 277
Gm15852 1 169932698 to 169934248 1550 - unclassified non-coding RNA gene predicted gene 15852
Hsd17b7 1 169949535 to 169969240 19705 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 7
Cpgi990 1 169968826 to 169969462 636 CpG island CpG island 990
Tssr14894 1 169969143 to 169969218 75 - TSS region transcription start site region 14894
3110045C21Rik 1 169969409 to 169972396 2987 + antisense lncRNA gene RIKEN cDNA 3110045C21 gene
Tssr9919 1 169969428 to 169969454 26 + TSS region transcription start site region 9919
Tssr9920 1 169969765 to 169969773 8 + TSS region transcription start site region 9920
Ddr2 1 169972307 to 170110762 138455 - protein coding gene discoidin domain receptor family, member 2
Tssr14895 1 169974989 to 169975003 14 - TSS region transcription start site region 14895
Tssr14896 1 169975025 to 169975038 13 - TSS region transcription start site region 14896
Tssr278 1 170016244 to 170016246 2 + TSS region transcription start site region 278
Tssr14897 1 170110315 to 170110332 17 - TSS region transcription start site region 14897
Tssr14898 1 170110425 to 170110440 15 - TSS region transcription start site region 14898
Tssr14899 1 170110441 to 170110480 39 - TSS region transcription start site region 14899
Tssr14900 1 170110491 to 170110532 41 - TSS region transcription start site region 14900
Tssr14901 1 170110723 to 170110729 6 - TSS region transcription start site region 14901
Tssr14902 1 170110744 to 170110823 79 - TSS region transcription start site region 14902
Tssr14903 1 170110829 to 170110834 5 - TSS region transcription start site region 14903
Tssr279 1 170111070 to 170111086 16 - TSS region transcription start site region 279
Tssr14904 1 170111177 to 170111214 37 - TSS region transcription start site region 14904
Tssr14905 1 170111416 to 170111427 11 - TSS region transcription start site region 14905
Uap1 1 170141938 to 170174957 33019 - protein coding gene UDP-N-acetylglucosamine pyrophosphorylase 1
Cpgi991 1 170174277 to 170175586 1309 CpG island CpG island 991
Tssr14906 1 170174781 to 170174796 15 - TSS region transcription start site region 14906
Tssr14907 1 170174816 to 170174827 11 - TSS region transcription start site region 14907
Tssr14908 1 170174884 to 170174899 15 - TSS region transcription start site region 14908
Tssr14909 1 170174900 to 170174951 51 - TSS region transcription start site region 14909
Tssr14910 1 170174959 to 170175001 42 - TSS region transcription start site region 14910
Gm37748 1 170175180 to 170176319 1139 + lincRNA gene predicted gene, 37748
Gm37502 1 170175382 to 170177772 2390 - lincRNA gene predicted gene, 37502
Tssr14911 1 170198767 to 170198791 24 - TSS region transcription start site region 14911
Uhmk1 1 170199256 to 170215435 16179 - protein coding gene U2AF homology motif (UHM) kinase 1
Tssr14912 1 170211743 to 170211746 3 - TSS region transcription start site region 14912
Tssr14913 1 170211768 to 170211775 7 - TSS region transcription start site region 14913
Tssr14914 1 170211779 to 170211785 6 - TSS region transcription start site region 14914
Cpgi992 1 170214730 to 170215479 749 CpG island CpG island 992
Tssr9921 1 170214826 to 170214863 37 + TSS region transcription start site region 9921
4930500M09Rik 1 170214860 to 170216422 1562 + antisense lncRNA gene RIKEN cDNA 4930500M09 gene
Tssr14915 1 170215380 to 170215420 40 - TSS region transcription start site region 14915
Sh2d1b2 1 170232871 to 170251587 18716 + protein coding gene SH2 domain containing 1B2
D1Mit353 1 170239646 to 170239759 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 353
D1Mit508 1 170239666 to 170239913 247 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 508
Gm6345 1 170254049 to 170255739 1690 - pseudogene predicted gene 6345
Cpgi993 1 170255066 to 170255838 772 CpG island CpG island 993
Tssr14916 1 170255721 to 170255761 40 - TSS region transcription start site region 14916
Sh2d1b1 1 170277324 to 170285662 8338 + protein coding gene SH2 domain containing 1B1