Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:168509995-169420172

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nidd3k 1 147249520 to 169211344 21961824 QTL Nidd3 on KK-A
Cfcd 1 168000922 to 169211344 1210422 QTL contextual fear conditioning
Tssr275 1 168582818 to 168582840 22 - TSS region transcription start site region 275
Gm34320 1 168661495 to 168731546 70051 - lncRNA gene predicted gene, 34320
1700063I16Rik 1 168675272 to 168675882 610 - unclassified gene RIKEN cDNA 1700063I16 gene
Tssr14884 1 168675863 to 168675873 10 - TSS region transcription start site region 14884
Tssr14885 1 168675876 to 168675888 12 - TSS region transcription start site region 14885
Tssr14886 1 168675900 to 168675913 13 - TSS region transcription start site region 14886
D1Mit540.1 1 168755783 to 168755928 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 540.1
D1Mit540 1 168755906 to 168756030 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 540
Tssr14887 1 168873727 to 168873734 7 - TSS region transcription start site region 14887
D1Mit114 1 168891415 to 168891558 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 114
D1Mit112 1 168964995 to 168965172 177 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 112
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
D1Mit111 1 169007542 to 169007711 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 111
Nba2 1 169007542 to 169007711 169 QTL New Zealand Black autoimmunity 2
Mir6354 1 169018974 to 169019089 115 - miRNA gene microRNA 6354
Tssr14888 1 169046869 to 169046878 9 - TSS region transcription start site region 14888
Tssr14889 1 169046891 to 169046896 5 - TSS region transcription start site region 14889
Tssr14890 1 169087599 to 169087601 2 - TSS region transcription start site region 14890
Gm39697 1 169128222 to 169172873 44651 - lncRNA gene predicted gene, 39697
Lprq3 1 169211172 to 169211344 172 QTL lipoprotein QTL 3
Lbw7 1 169211172 to 169211344 172 QTL lupus NZB x NZW 7
Cfmq1 1 169211172 to 169211344 172 QTL cystic fibrosis modifier QTL 1
D1Mit36 1 169211172 to 169211344 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 36
Cgnz1 1 169211172 to 169211344 172 QTL chronic glomerulonephritis in NZM 1
Bbaa30 1 169211172 to 174628870 5417698 QTL B.burgdorferi-associated arthritis 30
Sle16 1 169211172 to 177550021 8338849 QTL systematic lupus erythematosus susceptibility 16
Sle1 1 169211172 to 169211344 172 QTL systemic lupus erythmatosus susceptibility 1
D1Mit402 1 169251917 to 169252020 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 402
Gm34421 1 169254610 to 169260876 6266 + lncRNA gene predicted gene, 34421
Hdlq107 1 169305175 to 169305175 0 QTL HDL QTL 107
Ewc1 1 169305175 to 169305175 0 QTL ethanol withdrawal and consumption 1
Tcq11 1 169310000 to 179820000 10510000 QTL total cholesterol QTL 11
Gm37839 1 169328529 to 169347632 19103 - lincRNA gene predicted gene, 37839
Gm34477 1 169364509 to 169370283 5774 + lncRNA gene predicted gene, 34477