Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:167410493-171900508

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809 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrnx12 1 112081092 to 168358833 56277741 QTL learning-contextual 12
Ap1q 1 147032461 to 167758653 20726192 QTL alcohol preference 1 QTL
Nidd3k 1 147249520 to 169211344 21961824 QTL Nidd3 on KK-A
Scgq2 1 147249520 to 171804689 24555169 QTL spontaneous crescentic glomerulonephritis QTL 2
Hcs7 1 156774467 to 168358833 11584366 QTL hepatocarcinogenesis susceptibility 7
Leusq4 1 156774467 to 170976071 14201604 QTL leucocytosis susceptibility QTL 4
Leusq1 1 156774467 to 168358833 11584366 QTL leucocytosis susceptibility QTL 1
Gm34207 1 167423356 to 167455198 31842 + lncRNA gene predicted gene, 34207
Lrrc52 1 167445675 to 167466780 21105 - protein coding gene leucine rich repeat containing 52
Cpgi977 1 167445842 to 167446106 264 CpG island CpG island 977
Tssr14857 1 167466979 to 167466987 8 - TSS region transcription start site region 14857
Tssr14858 1 167467012 to 167467024 12 - TSS region transcription start site region 14858
D1Mit109 1 167468543 to 167468738 195 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 109
Tssr9896 1 167562828 to 167562837 9 + TSS region transcription start site region 9896
Cpgi978 1 167598280 to 167598973 693 CpG island CpG island 978
Tssr9897 1 167598302 to 167598325 23 + TSS region transcription start site region 9897
Tssr9898 1 167598326 to 167598351 25 + TSS region transcription start site region 9898
Tssr9899 1 167598360 to 167598374 14 + TSS region transcription start site region 9899
Rxrg 1 167598384 to 167639623 41239 + protein coding gene retinoid X receptor gamma
Tssr9900 1 167598389 to 167598411 22 + TSS region transcription start site region 9900
Tssr9901 1 167598420 to 167598438 18 + TSS region transcription start site region 9901
Tssr9902 1 167598450 to 167598476 26 + TSS region transcription start site region 9902
Tssr9903 1 167598589 to 167598618 29 + TSS region transcription start site region 9903
Tssr9904 1 167598692 to 167598729 37 + TSS region transcription start site region 9904
Cpgi979 1 167618165 to 167618562 397 CpG island CpG island 979
Tssr9905 1 167618246 to 167618299 53 + TSS region transcription start site region 9905
Cpgi980 1 167632208 to 167632718 510 CpG island CpG island 980
Cpgi981 1 167660550 to 167660742 192 CpG island CpG island 981
Cpgi982 1 167661173 to 167661469 296 CpG island CpG island 982
Cpgi983 1 167672704 to 167673019 315 CpG island CpG island 983
Cpgi984 1 167688216 to 167690198 1982 CpG island CpG island 984
Tssr9906 1 167688620 to 167688633 13 + TSS region transcription start site region 9906
Tssr14859 1 167689037 to 167689049 12 - TSS region transcription start site region 14859
Tssr9907 1 167689108 to 167689126 18 + TSS region transcription start site region 9907
Tssr9908 1 167689202 to 167689217 15 + TSS region transcription start site region 9908
Lmx1a 1 167689237 to 167848741 159504 + protein coding gene LIM homeobox transcription factor 1 alpha
Tssr14860 1 167689400 to 167689409 9 - TSS region transcription start site region 14860
Tssr9909 1 167689525 to 167689534 9 + TSS region transcription start site region 9909
Tssr9910 1 167689552 to 167689563 11 + TSS region transcription start site region 9910
Tssr9911 1 167689634 to 167689662 28 + TSS region transcription start site region 9911
Cpgi985 1 167691900 to 167692483 583 CpG island CpG island 985
D1Mit110 1 167758517 to 167758653 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 110
Liq1 1 167758517 to 191493284 23734767 QTL limb inflammation QTL 1
Cpgi986 1 167802703 to 167803636 933 CpG island CpG island 986
D1Mit16 1 167929168 to 167929353 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 16
Mop3 1 167929168 to 189571420 21642252 QTL morphine preference 3
Skmw12 1 167929168 to 167929353 185 QTL skeletal muscle weight 12
Cpgi987 1 167929781 to 167930095 314 CpG island CpG island 987
D1Mit370 1 168000922 to 168001092 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 370
Cfcd 1 168000922 to 169211344 1210422 QTL contextual fear conditioning
Gm20711 1 168004139 to 168122465 118326 + antisense lncRNA gene predicted gene 20711
Pbx1 1 168119364 to 168432264 312900 - protein coding gene pre B cell leukemia homeobox 1
Tssr14861 1 168155777 to 168155793 16 - TSS region transcription start site region 14861
Tssr14862 1 168215483 to 168215489 6 - TSS region transcription start site region 14862
Tssr14863 1 168293445 to 168293451 6 - TSS region transcription start site region 14863
Tssr14864 1 168323272 to 168323276 4 - TSS region transcription start site region 14864
Gm37524 1 168335980 to 168337671 1691 - unclassified gene predicted gene, 37524
Tssr14865 1 168343004 to 168343015 11 - TSS region transcription start site region 14865
Gm38381 1 168348534 to 168350808 2274 - unclassified gene predicted gene, 38381
Nktcn1 1 168358674 to 171804689 3446015 QTL natural killer T cell numbers 1
Sluc5 1 168358674 to 168358833 159 QTL susceptibility to lung cancer 5
D1Mit15 1 168358674 to 168358833 159 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 15
Sle1a 1 168358674 to 170239759 1881085 QTL systematic lupus erythematosus susceptibility 1a
Tssr14866 1 168370090 to 168370095 5 - TSS region transcription start site region 14866
Tssr14867 1 168395559 to 168395563 4 - TSS region transcription start site region 14867
Tssr14868 1 168406276 to 168406279 3 - TSS region transcription start site region 14868
4833414E09Rik 1 168419639 to 168420828 1189 unclassified non-coding RNA gene RIKEN cDNA 4833414E09 gene
Tssr9912 1 168430401 to 168430414 13 + TSS region transcription start site region 9912
Tssr14869 1 168431267 to 168431269 2 - TSS region transcription start site region 14869
Tssr14870 1 168431502 to 168431513 11 - TSS region transcription start site region 14870
Tssr14871 1 168431547 to 168431558 11 - TSS region transcription start site region 14871
Tssr14872 1 168431564 to 168431591 27 - TSS region transcription start site region 14872
Tssr14873 1 168431599 to 168431638 39 - TSS region transcription start site region 14873
Tssr14874 1 168431646 to 168431666 20 - TSS region transcription start site region 14874
Tssr14875 1 168431695 to 168431713 18 - TSS region transcription start site region 14875
Tssr14876 1 168431860 to 168431884 24 - TSS region transcription start site region 14876
Tssr14877 1 168431896 to 168431905 9 - TSS region transcription start site region 14877
Tssr14878 1 168431909 to 168431982 73 - TSS region transcription start site region 14878
Tssr14879 1 168432111 to 168432125 14 - TSS region transcription start site region 14879
Tssr14880 1 168432142 to 168432186 44 - TSS region transcription start site region 14880
Tssr14881 1 168432191 to 168432202 11 - TSS region transcription start site region 14881
Tssr14882 1 168432204 to 168432225 21 - TSS region transcription start site region 14882
Tssr14883 1 168432306 to 168432347 41 - TSS region transcription start site region 14883
Cpgi988 1 168432566 to 168432783 217 CpG island CpG island 988
Tssr274 1 168432573 to 168432578 5 + TSS region transcription start site region 274
Gm39696 1 168475634 to 168495913 20279 - lncRNA gene predicted gene, 39696
Mir6348 1 168490643 to 168490762 119 + miRNA gene microRNA 6348
Tssr9913 1 168502712 to 168502721 9 + TSS region transcription start site region 9913
Tssr275 1 168582818 to 168582840 22 - TSS region transcription start site region 275
Gm34320 1 168661495 to 168731546 70051 - lncRNA gene predicted gene, 34320
1700063I16Rik 1 168675272 to 168675882 610 - unclassified gene RIKEN cDNA 1700063I16 gene
Tssr14884 1 168675863 to 168675873 10 - TSS region transcription start site region 14884
Tssr14885 1 168675876 to 168675888 12 - TSS region transcription start site region 14885
Tssr14886 1 168675900 to 168675913 13 - TSS region transcription start site region 14886
D1Mit540.1 1 168755783 to 168755928 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 540.1
D1Mit540 1 168755906 to 168756030 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 540
Tssr14887 1 168873727 to 168873734 7 - TSS region transcription start site region 14887
D1Mit114 1 168891415 to 168891558 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 114
D1Mit112 1 168964995 to 168965172 177 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 112
Nba2 1 169007542 to 169007711 169 QTL New Zealand Black autoimmunity 2
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
D1Mit111 1 169007542 to 169007711 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 111
Mir6354 1 169018974 to 169019089 115 - miRNA gene microRNA 6354
Tssr14888 1 169046869 to 169046878 9 - TSS region transcription start site region 14888
Tssr14889 1 169046891 to 169046896 5 - TSS region transcription start site region 14889
Tssr14890 1 169087599 to 169087601 2 - TSS region transcription start site region 14890
Gm39697 1 169128222 to 169172873 44651 - lncRNA gene predicted gene, 39697
Lprq3 1 169211172 to 169211344 172 QTL lipoprotein QTL 3
Sle16 1 169211172 to 177550021 8338849 QTL systematic lupus erythematosus susceptibility 16
Sle1 1 169211172 to 169211344 172 QTL systemic lupus erythmatosus susceptibility 1
D1Mit36 1 169211172 to 169211344 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 36
Lbw7 1 169211172 to 169211344 172 QTL lupus NZB x NZW 7
Cgnz1 1 169211172 to 169211344 172 QTL chronic glomerulonephritis in NZM 1
Cfmq1 1 169211172 to 169211344 172 QTL cystic fibrosis modifier QTL 1
Bbaa30 1 169211172 to 174628870 5417698 QTL B.burgdorferi-associated arthritis 30
D1Mit402 1 169251917 to 169252020 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 402
Gm34421 1 169254610 to 169260876 6266 + lncRNA gene predicted gene, 34421
Ewc1 1 169305175 to 169305175 0 QTL ethanol withdrawal and consumption 1
Hdlq107 1 169305175 to 169305175 0 QTL HDL QTL 107
Tcq11 1 169310000 to 179820000 10510000 QTL total cholesterol QTL 11
Gm37839 1 169328529 to 169347632 19103 - lincRNA gene predicted gene, 37839
Gm34477 1 169364509 to 169370283 5774 + lncRNA gene predicted gene, 34477
Gm5265 1 169453528 to 169453869 341 - pseudogene predicted pseudogene 5265
Gm34535 1 169462966 to 169470755 7789 + lncRNA gene predicted gene, 34535
Nuf2 1 169497934 to 169531464 33530 - protein coding gene NUF2, NDC80 kinetochore complex component
Cpgi989 1 169531199 to 169531707 508 CpG island CpG island 989
Tssr14891 1 169531343 to 169531437 94 - TSS region transcription start site region 14891
Tssr14892 1 169531447 to 169531460 13 - TSS region transcription start site region 14892
Gm34624 1 169531526 to 169542467 10941 + lncRNA gene predicted gene, 34624
Gm18900 1 169591549 to 169592132 583 - pseudogene predicted gene, 18900
Gm36980 1 169595784 to 169596939 1155 - pseudogene predicted gene, 36980
Tssr9914 1 169655493 to 169655508 15 + TSS region transcription start site region 9914
Rgs5 1 169655501 to 169695813 40312 + protein coding gene regulator of G-protein signaling 5
Tssr9915 1 169692573 to 169692578 5 + TSS region transcription start site region 9915
Tssr9916 1 169693666 to 169693695 29 + TSS region transcription start site region 9916
Tssr9917 1 169693827 to 169693847 20 + TSS region transcription start site region 9917
Tssr276 1 169694030 to 169694055 25 + TSS region transcription start site region 276
Rgs4 1 169741477 to 169747642 6165 - protein coding gene regulator of G-protein signaling 4
Tssr14893 1 169747634 to 169747649 15 - TSS region transcription start site region 14893
Gm39698 1 169748473 to 169756950 8477 - lncRNA gene predicted gene, 39698
Gm22114 1 169799450 to 169799556 106 - snRNA gene predicted gene, 22114
D1Mit524 1 169843673 to 169843787 114 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-524
Gm37586 1 169853548 to 169853751 203 + pseudogene predicted gene, 37586
Gm39699 1 169926029 to 169928588 2559 + lncRNA gene predicted gene, 39699
Ccdc190 1 169928648 to 169934653 6005 + protein coding gene coiled-coil domain containing 190
Tssr9918 1 169928807 to 169928815 8 + TSS region transcription start site region 9918
Tssr277 1 169930094 to 169930136 42 + TSS region transcription start site region 277
Gm15852 1 169932698 to 169934248 1550 - unclassified non-coding RNA gene predicted gene 15852
Hsd17b7 1 169949535 to 169969240 19705 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 7
Cpgi990 1 169968826 to 169969462 636 CpG island CpG island 990
Tssr14894 1 169969143 to 169969218 75 - TSS region transcription start site region 14894
3110045C21Rik 1 169969409 to 169972396 2987 + antisense lncRNA gene RIKEN cDNA 3110045C21 gene
Tssr9919 1 169969428 to 169969454 26 + TSS region transcription start site region 9919
Tssr9920 1 169969765 to 169969773 8 + TSS region transcription start site region 9920
Ddr2 1 169972307 to 170110762 138455 - protein coding gene discoidin domain receptor family, member 2
Tssr14895 1 169974989 to 169975003 14 - TSS region transcription start site region 14895
Tssr14896 1 169975025 to 169975038 13 - TSS region transcription start site region 14896
Tssr278 1 170016244 to 170016246 2 + TSS region transcription start site region 278
Tssr14897 1 170110315 to 170110332 17 - TSS region transcription start site region 14897
Tssr14898 1 170110425 to 170110440 15 - TSS region transcription start site region 14898
Tssr14899 1 170110441 to 170110480 39 - TSS region transcription start site region 14899
Tssr14900 1 170110491 to 170110532 41 - TSS region transcription start site region 14900
Tssr14901 1 170110723 to 170110729 6 - TSS region transcription start site region 14901
Tssr14902 1 170110744 to 170110823 79 - TSS region transcription start site region 14902
Tssr14903 1 170110829 to 170110834 5 - TSS region transcription start site region 14903
Tssr279 1 170111070 to 170111086 16 - TSS region transcription start site region 279
Tssr14904 1 170111177 to 170111214 37 - TSS region transcription start site region 14904
Tssr14905 1 170111416 to 170111427 11 - TSS region transcription start site region 14905
Uap1 1 170141938 to 170174957 33019 - protein coding gene UDP-N-acetylglucosamine pyrophosphorylase 1
Cpgi991 1 170174277 to 170175586 1309 CpG island CpG island 991
Tssr14906 1 170174781 to 170174796 15 - TSS region transcription start site region 14906
Tssr14907 1 170174816 to 170174827 11 - TSS region transcription start site region 14907
Tssr14908 1 170174884 to 170174899 15 - TSS region transcription start site region 14908
Tssr14909 1 170174900 to 170174951 51 - TSS region transcription start site region 14909
Tssr14910 1 170174959 to 170175001 42 - TSS region transcription start site region 14910
Gm37748 1 170175180 to 170176319 1139 + lincRNA gene predicted gene, 37748
Gm37502 1 170175382 to 170177772 2390 - lincRNA gene predicted gene, 37502
Tssr14911 1 170198767 to 170198791 24 - TSS region transcription start site region 14911
Uhmk1 1 170199256 to 170215435 16179 - protein coding gene U2AF homology motif (UHM) kinase 1
Tssr14912 1 170211743 to 170211746 3 - TSS region transcription start site region 14912
Tssr14913 1 170211768 to 170211775 7 - TSS region transcription start site region 14913
Tssr14914 1 170211779 to 170211785 6 - TSS region transcription start site region 14914
Cpgi992 1 170214730 to 170215479 749 CpG island CpG island 992
Tssr9921 1 170214826 to 170214863 37 + TSS region transcription start site region 9921
4930500M09Rik 1 170214860 to 170216422 1562 + antisense lncRNA gene RIKEN cDNA 4930500M09 gene
Tssr14915 1 170215380 to 170215420 40 - TSS region transcription start site region 14915
Sh2d1b2 1 170232871 to 170251587 18716 + protein coding gene SH2 domain containing 1B2
D1Mit353 1 170239646 to 170239759 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 353
D1Mit508 1 170239666 to 170239913 247 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 508
Gm6345 1 170254049 to 170255739 1690 - pseudogene predicted gene 6345
Cpgi993 1 170255066 to 170255838 772 CpG island CpG island 993
Tssr14916 1 170255721 to 170255761 40 - TSS region transcription start site region 14916
Sh2d1b1 1 170277324 to 170285662 8338 + protein coding gene SH2 domain containing 1B1
Gm7694 1 170298199 to 170306332 8133 - protein coding gene predicted gene 7694
Tssr9922 1 170308802 to 170308828 26 + TSS region transcription start site region 9922
Tssr9923 1 170308836 to 170308884 48 + TSS region transcription start site region 9923
Spata46 1 170308861 to 170312125 3264 + protein coding gene spermatogenesis associated 46
Tssr9924 1 170308890 to 170308893 3 + TSS region transcription start site region 9924
Tssr9925 1 170309333 to 170309343 10 + TSS region transcription start site region 9925
Tssr14917 1 170312996 to 170312999 3 - TSS region transcription start site region 14917