Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:167336646-169526666

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrnx12 1 112081092 to 168358833 56277741 QTL learning-contextual 12
Ap1q 1 147032461 to 167758653 20726192 QTL alcohol preference 1 QTL
Nidd3k 1 147249520 to 169211344 21961824 QTL Nidd3 on KK-A
Leusq1 1 156774467 to 168358833 11584366 QTL leucocytosis susceptibility QTL 1
Hcs7 1 156774467 to 168358833 11584366 QTL hepatocarcinogenesis susceptibility 7
Cpgi973 1 167340022 to 167340760 738 CpG island CpG island 973
Gm25911 1 167340369 to 167340424 55 - miRNA gene predicted gene, 25911
Tssr14850 1 167340515 to 167340546 31 - TSS region transcription start site region 14850
Gm24182 1 167349025 to 167349131 106 + snRNA gene predicted gene, 24182
Cpgi974 1 167349869 to 167350655 786 CpG island CpG island 974
Tssr9890 1 167349976 to 167350065 89 + TSS region transcription start site region 9890
Aldh9a1 1 167349991 to 167368530 18539 + protein coding gene aldehyde dehydrogenase 9, subfamily A1
Tssr9891 1 167350151 to 167350162 11 + TSS region transcription start site region 9891
Tssr9892 1 167350165 to 167350170 5 + TSS region transcription start site region 9892
Tssr9893 1 167350184 to 167350234 50 + TSS region transcription start site region 9893
Tssr9894 1 167350246 to 167350249 3 + TSS region transcription start site region 9894
Tssr9895 1 167350276 to 167350285 9 + TSS region transcription start site region 9895
Tssr14851 1 167350360 to 167350370 10 - TSS region transcription start site region 14851
Mgst3 1 167372384 to 167393797 21413 - protein coding gene microsomal glutathione S-transferase 3
Tssr14852 1 167372417 to 167372422 5 - TSS region transcription start site region 14852
Tssr14853 1 167373521 to 167373525 4 - TSS region transcription start site region 14853
Tssr14854 1 167374541 to 167374573 32 - TSS region transcription start site region 14854
Cpgi975 1 167393581 to 167393883 302 CpG island CpG island 975
Tssr14855 1 167393775 to 167393824 49 - TSS region transcription start site region 14855
Tssr14856 1 167393826 to 167393835 9 - TSS region transcription start site region 14856
Cpgi976 1 167393950 to 167394304 354 CpG island CpG island 976
Gm34207 1 167423356 to 167455198 31842 + lncRNA gene predicted gene, 34207
Lrrc52 1 167445675 to 167466780 21105 - protein coding gene leucine rich repeat containing 52
Cpgi977 1 167445842 to 167446106 264 CpG island CpG island 977
Tssr14857 1 167466979 to 167466987 8 - TSS region transcription start site region 14857
Tssr14858 1 167467012 to 167467024 12 - TSS region transcription start site region 14858
D1Mit109 1 167468543 to 167468738 195 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 109
Tssr9896 1 167562828 to 167562837 9 + TSS region transcription start site region 9896
Cpgi978 1 167598280 to 167598973 693 CpG island CpG island 978
Tssr9897 1 167598302 to 167598325 23 + TSS region transcription start site region 9897
Tssr9898 1 167598326 to 167598351 25 + TSS region transcription start site region 9898
Tssr9899 1 167598360 to 167598374 14 + TSS region transcription start site region 9899
Rxrg 1 167598384 to 167639623 41239 + protein coding gene retinoid X receptor gamma
Tssr9900 1 167598389 to 167598411 22 + TSS region transcription start site region 9900
Tssr9901 1 167598420 to 167598438 18 + TSS region transcription start site region 9901
Tssr9902 1 167598450 to 167598476 26 + TSS region transcription start site region 9902
Tssr9903 1 167598589 to 167598618 29 + TSS region transcription start site region 9903
Tssr9904 1 167598692 to 167598729 37 + TSS region transcription start site region 9904
Cpgi979 1 167618165 to 167618562 397 CpG island CpG island 979
Tssr9905 1 167618246 to 167618299 53 + TSS region transcription start site region 9905
Cpgi980 1 167632208 to 167632718 510 CpG island CpG island 980
Cpgi981 1 167660550 to 167660742 192 CpG island CpG island 981
Cpgi982 1 167661173 to 167661469 296 CpG island CpG island 982
Cpgi983 1 167672704 to 167673019 315 CpG island CpG island 983
Cpgi984 1 167688216 to 167690198 1982 CpG island CpG island 984
Tssr9906 1 167688620 to 167688633 13 + TSS region transcription start site region 9906
Tssr14859 1 167689037 to 167689049 12 - TSS region transcription start site region 14859
Tssr9907 1 167689108 to 167689126 18 + TSS region transcription start site region 9907
Tssr9908 1 167689202 to 167689217 15 + TSS region transcription start site region 9908
Lmx1a 1 167689237 to 167848741 159504 + protein coding gene LIM homeobox transcription factor 1 alpha
Tssr14860 1 167689400 to 167689409 9 - TSS region transcription start site region 14860
Tssr9909 1 167689525 to 167689534 9 + TSS region transcription start site region 9909
Tssr9910 1 167689552 to 167689563 11 + TSS region transcription start site region 9910
Tssr9911 1 167689634 to 167689662 28 + TSS region transcription start site region 9911
Cpgi985 1 167691900 to 167692483 583 CpG island CpG island 985
D1Mit110 1 167758517 to 167758653 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 110
Liq1 1 167758517 to 191493284 23734767 QTL limb inflammation QTL 1
Cpgi986 1 167802703 to 167803636 933 CpG island CpG island 986
Mop3 1 167929168 to 189571420 21642252 QTL morphine preference 3
Skmw12 1 167929168 to 167929353 185 QTL skeletal muscle weight 12
D1Mit16 1 167929168 to 167929353 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 16
Cpgi987 1 167929781 to 167930095 314 CpG island CpG island 987
Cfcd 1 168000922 to 169211344 1210422 QTL contextual fear conditioning
D1Mit370 1 168000922 to 168001092 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 370
Gm20711 1 168004139 to 168122465 118326 + antisense lncRNA gene predicted gene 20711
Pbx1 1 168119364 to 168432264 312900 - protein coding gene pre B cell leukemia homeobox 1
Tssr14861 1 168155777 to 168155793 16 - TSS region transcription start site region 14861
Tssr14862 1 168215483 to 168215489 6 - TSS region transcription start site region 14862
Tssr14863 1 168293445 to 168293451 6 - TSS region transcription start site region 14863
Tssr14864 1 168323272 to 168323276 4 - TSS region transcription start site region 14864
Gm37524 1 168335980 to 168337671 1691 - unclassified gene predicted gene, 37524
Tssr14865 1 168343004 to 168343015 11 - TSS region transcription start site region 14865
Gm38381 1 168348534 to 168350808 2274 - unclassified gene predicted gene, 38381
D1Mit15 1 168358674 to 168358833 159 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 15
Sle1a 1 168358674 to 170239759 1881085 QTL systematic lupus erythematosus susceptibility 1a
Sluc5 1 168358674 to 168358833 159 QTL susceptibility to lung cancer 5
Nktcn1 1 168358674 to 171804689 3446015 QTL natural killer T cell numbers 1
Tssr14866 1 168370090 to 168370095 5 - TSS region transcription start site region 14866
Tssr14867 1 168395559 to 168395563 4 - TSS region transcription start site region 14867
Tssr14868 1 168406276 to 168406279 3 - TSS region transcription start site region 14868
4833414E09Rik 1 168419639 to 168420828 1189 unclassified non-coding RNA gene RIKEN cDNA 4833414E09 gene
Tssr9912 1 168430401 to 168430414 13 + TSS region transcription start site region 9912
Tssr14869 1 168431267 to 168431269 2 - TSS region transcription start site region 14869
Tssr14870 1 168431502 to 168431513 11 - TSS region transcription start site region 14870
Tssr14871 1 168431547 to 168431558 11 - TSS region transcription start site region 14871
Tssr14872 1 168431564 to 168431591 27 - TSS region transcription start site region 14872
Tssr14873 1 168431599 to 168431638 39 - TSS region transcription start site region 14873
Tssr14874 1 168431646 to 168431666 20 - TSS region transcription start site region 14874
Tssr14875 1 168431695 to 168431713 18 - TSS region transcription start site region 14875
Tssr14876 1 168431860 to 168431884 24 - TSS region transcription start site region 14876
Tssr14877 1 168431896 to 168431905 9 - TSS region transcription start site region 14877
Tssr14878 1 168431909 to 168431982 73 - TSS region transcription start site region 14878
Tssr14879 1 168432111 to 168432125 14 - TSS region transcription start site region 14879
Tssr14880 1 168432142 to 168432186 44 - TSS region transcription start site region 14880
Tssr14881 1 168432191 to 168432202 11 - TSS region transcription start site region 14881
Tssr14882 1 168432204 to 168432225 21 - TSS region transcription start site region 14882
Tssr14883 1 168432306 to 168432347 41 - TSS region transcription start site region 14883
Cpgi988 1 168432566 to 168432783 217 CpG island CpG island 988
Tssr274 1 168432573 to 168432578 5 + TSS region transcription start site region 274
Gm39696 1 168475634 to 168495913 20279 - lncRNA gene predicted gene, 39696
Mir6348 1 168490643 to 168490762 119 + miRNA gene microRNA 6348
Tssr9913 1 168502712 to 168502721 9 + TSS region transcription start site region 9913
Tssr275 1 168582818 to 168582840 22 - TSS region transcription start site region 275
Gm34320 1 168661495 to 168731546 70051 - lncRNA gene predicted gene, 34320
1700063I16Rik 1 168675272 to 168675882 610 - unclassified gene RIKEN cDNA 1700063I16 gene
Tssr14884 1 168675863 to 168675873 10 - TSS region transcription start site region 14884
Tssr14885 1 168675876 to 168675888 12 - TSS region transcription start site region 14885
Tssr14886 1 168675900 to 168675913 13 - TSS region transcription start site region 14886
D1Mit540.1 1 168755783 to 168755928 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 540.1
D1Mit540 1 168755906 to 168756030 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 540
Tssr14887 1 168873727 to 168873734 7 - TSS region transcription start site region 14887
D1Mit114 1 168891415 to 168891558 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 114
D1Mit112 1 168964995 to 168965172 177 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 112
Bmd5b 1 169007542 to 171938066 2930524 QTL bone mineral density 5b
D1Mit111 1 169007542 to 169007711 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 111
Nba2 1 169007542 to 169007711 169 QTL New Zealand Black autoimmunity 2
Mir6354 1 169018974 to 169019089 115 - miRNA gene microRNA 6354
Tssr14888 1 169046869 to 169046878 9 - TSS region transcription start site region 14888
Tssr14889 1 169046891 to 169046896 5 - TSS region transcription start site region 14889
Tssr14890 1 169087599 to 169087601 2 - TSS region transcription start site region 14890
Gm39697 1 169128222 to 169172873 44651 - lncRNA gene predicted gene, 39697
Lbw7 1 169211172 to 169211344 172 QTL lupus NZB x NZW 7
Lprq3 1 169211172 to 169211344 172 QTL lipoprotein QTL 3
D1Mit36 1 169211172 to 169211344 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 36
Cfmq1 1 169211172 to 169211344 172 QTL cystic fibrosis modifier QTL 1
Sle16 1 169211172 to 177550021 8338849 QTL systematic lupus erythematosus susceptibility 16
Sle1 1 169211172 to 169211344 172 QTL systemic lupus erythmatosus susceptibility 1
Cgnz1 1 169211172 to 169211344 172 QTL chronic glomerulonephritis in NZM 1
Bbaa30 1 169211172 to 174628870 5417698 QTL B.burgdorferi-associated arthritis 30
D1Mit402 1 169251917 to 169252020 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 402
Gm34421 1 169254610 to 169260876 6266 + lncRNA gene predicted gene, 34421
Hdlq107 1 169305175 to 169305175 0 QTL HDL QTL 107
Ewc1 1 169305175 to 169305175 0 QTL ethanol withdrawal and consumption 1
Tcq11 1 169310000 to 179820000 10510000 QTL total cholesterol QTL 11
Gm37839 1 169328529 to 169347632 19103 - lincRNA gene predicted gene, 37839
Gm34477 1 169364509 to 169370283 5774 + lncRNA gene predicted gene, 34477
Gm5265 1 169453528 to 169453869 341 - pseudogene predicted pseudogene 5265
Gm34535 1 169462966 to 169470755 7789 + lncRNA gene predicted gene, 34535
Nuf2 1 169497934 to 169531464 33530 - protein coding gene NUF2, NDC80 kinetochore complex component