Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:167288620-168088633

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ap1q 1 147032461 to 167758653 20726192 QTL alcohol preference 1 QTL
Mir6347 1 167290125 to 167290225 100 + miRNA gene microRNA 6347
D1Mit145 1 167295046 to 167295184 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 145
Gm37232 1 167296033 to 167296399 366 - pseudogene predicted gene, 37232
Cpgi972 1 167308204 to 167309122 918 CpG island CpG island 972
Tssr273 1 167308364 to 167308411 47 + TSS region transcription start site region 273
Tssr14847 1 167308582 to 167308613 31 - TSS region transcription start site region 14847
Tssr9886 1 167308649 to 167308670 21 + TSS region transcription start site region 9886
Tmco1 1 167308670 to 167333978 25308 + protein coding gene transmembrane and coiled-coil domains 1
Tssr9887 1 167308718 to 167308807 89 + TSS region transcription start site region 9887
Tssr9888 1 167308847 to 167308858 11 + TSS region transcription start site region 9888
Tssr14848 1 167331259 to 167331306 47 - TSS region transcription start site region 14848
Tssr14849 1 167331309 to 167331326 17 - TSS region transcription start site region 14849
Tssr9889 1 167331346 to 167331379 33 + TSS region transcription start site region 9889
Cpgi973 1 167340022 to 167340760 738 CpG island CpG island 973
Gm25911 1 167340369 to 167340424 55 - miRNA gene predicted gene, 25911
Tssr14850 1 167340515 to 167340546 31 - TSS region transcription start site region 14850
Gm24182 1 167349025 to 167349131 106 + snRNA gene predicted gene, 24182
Cpgi974 1 167349869 to 167350655 786 CpG island CpG island 974
Tssr9890 1 167349976 to 167350065 89 + TSS region transcription start site region 9890
Aldh9a1 1 167349991 to 167368530 18539 + protein coding gene aldehyde dehydrogenase 9, subfamily A1
Tssr9891 1 167350151 to 167350162 11 + TSS region transcription start site region 9891
Tssr9892 1 167350165 to 167350170 5 + TSS region transcription start site region 9892
Tssr9893 1 167350184 to 167350234 50 + TSS region transcription start site region 9893
Tssr9894 1 167350246 to 167350249 3 + TSS region transcription start site region 9894
Tssr9895 1 167350276 to 167350285 9 + TSS region transcription start site region 9895
Tssr14851 1 167350360 to 167350370 10 - TSS region transcription start site region 14851
Mgst3 1 167372384 to 167393797 21413 - protein coding gene microsomal glutathione S-transferase 3
Tssr14852 1 167372417 to 167372422 5 - TSS region transcription start site region 14852
Tssr14853 1 167373521 to 167373525 4 - TSS region transcription start site region 14853
Tssr14854 1 167374541 to 167374573 32 - TSS region transcription start site region 14854
Cpgi975 1 167393581 to 167393883 302 CpG island CpG island 975
Tssr14855 1 167393775 to 167393824 49 - TSS region transcription start site region 14855
Tssr14856 1 167393826 to 167393835 9 - TSS region transcription start site region 14856
Cpgi976 1 167393950 to 167394304 354 CpG island CpG island 976
Gm34207 1 167423356 to 167455198 31842 + lncRNA gene predicted gene, 34207
Lrrc52 1 167445675 to 167466780 21105 - protein coding gene leucine rich repeat containing 52
Cpgi977 1 167445842 to 167446106 264 CpG island CpG island 977
Tssr14857 1 167466979 to 167466987 8 - TSS region transcription start site region 14857
Tssr14858 1 167467012 to 167467024 12 - TSS region transcription start site region 14858
D1Mit109 1 167468543 to 167468738 195 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 109
Tssr9896 1 167562828 to 167562837 9 + TSS region transcription start site region 9896
Cpgi978 1 167598280 to 167598973 693 CpG island CpG island 978
Tssr9897 1 167598302 to 167598325 23 + TSS region transcription start site region 9897
Tssr9898 1 167598326 to 167598351 25 + TSS region transcription start site region 9898
Tssr9899 1 167598360 to 167598374 14 + TSS region transcription start site region 9899
Rxrg 1 167598384 to 167639623 41239 + protein coding gene retinoid X receptor gamma
Tssr9900 1 167598389 to 167598411 22 + TSS region transcription start site region 9900
Tssr9901 1 167598420 to 167598438 18 + TSS region transcription start site region 9901
Tssr9902 1 167598450 to 167598476 26 + TSS region transcription start site region 9902
Tssr9903 1 167598589 to 167598618 29 + TSS region transcription start site region 9903
Tssr9904 1 167598692 to 167598729 37 + TSS region transcription start site region 9904
Cpgi979 1 167618165 to 167618562 397 CpG island CpG island 979
Tssr9905 1 167618246 to 167618299 53 + TSS region transcription start site region 9905
Cpgi980 1 167632208 to 167632718 510 CpG island CpG island 980
Cpgi981 1 167660550 to 167660742 192 CpG island CpG island 981
Cpgi982 1 167661173 to 167661469 296 CpG island CpG island 982
Cpgi983 1 167672704 to 167673019 315 CpG island CpG island 983
Cpgi984 1 167688216 to 167690198 1982 CpG island CpG island 984
Tssr9906 1 167688620 to 167688633 13 + TSS region transcription start site region 9906
Tssr14859 1 167689037 to 167689049 12 - TSS region transcription start site region 14859
Tssr9907 1 167689108 to 167689126 18 + TSS region transcription start site region 9907
Tssr9908 1 167689202 to 167689217 15 + TSS region transcription start site region 9908
Lmx1a 1 167689237 to 167848741 159504 + protein coding gene LIM homeobox transcription factor 1 alpha
Tssr14860 1 167689400 to 167689409 9 - TSS region transcription start site region 14860
Tssr9909 1 167689525 to 167689534 9 + TSS region transcription start site region 9909
Tssr9910 1 167689552 to 167689563 11 + TSS region transcription start site region 9910
Tssr9911 1 167689634 to 167689662 28 + TSS region transcription start site region 9911
Cpgi985 1 167691900 to 167692483 583 CpG island CpG island 985
D1Mit110 1 167758517 to 167758653 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 110
Liq1 1 167758517 to 191493284 23734767 QTL limb inflammation QTL 1
Cpgi986 1 167802703 to 167803636 933 CpG island CpG island 986
D1Mit16 1 167929168 to 167929353 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 16
Mop3 1 167929168 to 189571420 21642252 QTL morphine preference 3
Skmw12 1 167929168 to 167929353 185 QTL skeletal muscle weight 12
Cpgi987 1 167929781 to 167930095 314 CpG island CpG island 987
D1Mit370 1 168000922 to 168001092 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 370
Cfcd 1 168000922 to 169211344 1210422 QTL contextual fear conditioning
Gm20711 1 168004139 to 168122465 118326 + antisense lncRNA gene predicted gene 20711