Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:166183913-168383923

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrnx12 1 112081092 to 168358833 56277741 QTL learning-contextual 12
Ap1q 1 147032461 to 167758653 20726192 QTL alcohol preference 1 QTL
Hcs7 1 156774467 to 168358833 11584366 QTL hepatocarcinogenesis susceptibility 7
Leusq1 1 156774467 to 168358833 11584366 QTL leucocytosis susceptibility QTL 1
Mael 1 166201385 to 166238744 37359 - protein coding gene maelstrom spermatogenic transposon silencer
D1Mit401 1 166203694 to 166203790 96 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 401
Tssr14814 1 166236907 to 166236925 18 - TSS region transcription start site region 14814
Cpgi964 1 166238369 to 166238975 606 CpG island CpG island 964
Tssr14815 1 166238427 to 166238442 15 - TSS region transcription start site region 14815
Tssr14816 1 166238686 to 166238719 33 - TSS region transcription start site region 14816
Tssr14817 1 166238725 to 166238762 37 - TSS region transcription start site region 14817
Cpgi965 1 166253798 to 166254982 1184 CpG island CpG island 965
Tssr9868 1 166254050 to 166254090 40 + TSS region transcription start site region 9868
Tssr9869 1 166254095 to 166254156 61 + TSS region transcription start site region 9869
Ildr2 1 166254139 to 166316823 62684 + protein coding gene immunoglobulin-like domain containing receptor 2
Tssr9870 1 166254159 to 166254170 11 + TSS region transcription start site region 9870
Tssr9871 1 166254186 to 166254249 63 + TSS region transcription start site region 9871
Tssr9872 1 166256593 to 166256601 8 + TSS region transcription start site region 9872
Cpgi966 1 166282760 to 166282978 218 CpG island CpG island 966
5330438I03Rik 1 166306741 to 166309585 2844 - antisense lncRNA gene RIKEN cDNA 5330438I03 gene
Cpgi967 1 166308559 to 166309688 1129 CpG island CpG island 967
Tssr9873 1 166339420 to 166339427 7 + TSS region transcription start site region 9873
Gm15853 1 166377878 to 166380493 2615 - antisense lncRNA gene predicted gene 15853
Cpgi968 1 166378649 to 166380177 1528 CpG island CpG island 968
Tada1 1 166379167 to 166393621 14454 + protein coding gene transcriptional adaptor 1
Tssr9874 1 166379272 to 166379357 85 + TSS region transcription start site region 9874
Tssr9875 1 166379361 to 166379407 46 + TSS region transcription start site region 9875
Tssr14818 1 166380105 to 166380131 26 - TSS region transcription start site region 14818
Pogk 1 166393610 to 166409850 16240 - protein coding gene pogo transposable element with KRAB domain
Cpgi969 1 166409105 to 166410166 1061 CpG island CpG island 969
Tssr14819 1 166409747 to 166409753 6 - TSS region transcription start site region 14819
Tssr14820 1 166409773 to 166409849 76 - TSS region transcription start site region 14820
Gm16418 1 166431705 to 166431875 170 - pseudogene predicted pseudogene 16418
Gm39694 1 166432678 to 166441856 9178 + lncRNA gene predicted gene, 39694
Gm33354 1 166448252 to 166449157 905 - lncRNA gene predicted gene, 33354
Tssr14821 1 166464903 to 166464930 27 - TSS region transcription start site region 14821
Tssr14822 1 166483458 to 166483473 15 - TSS region transcription start site region 14822
Gm4846 1 166483613 to 166497588 13975 - protein coding gene predicted gene 4846
Tssr14823 1 166503780 to 166503792 12 - TSS region transcription start site region 14823
Tssr14824 1 166503872 to 166503878 6 - TSS region transcription start site region 14824
Tssr14825 1 166506191 to 166506195 4 - TSS region transcription start site region 14825
Gm22992 1 166620362 to 166620482 120 + miRNA gene predicted gene, 22992
Gm4847 1 166628971 to 166647693 18722 - protein coding gene predicted gene 4847
Fmo9 1 166662055 to 166681845 19790 - protein coding gene flavin containing monooxygenase 9
Tssr14826 1 166681842 to 166681847 5 - TSS region transcription start site region 14826
D1Mit57.1 1 166703894 to 166704053 159 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 57.1
D1Mit57 1 166703997 to 166704203 206 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 57
Tssr9876 1 166762132 to 166762142 10 + TSS region transcription start site region 9876
Gm4954 1 166762145 to 166770485 8340 + pseudogene predicted gene 4954
Gm37904 1 166798528 to 166798839 311 - pseudogene predicted gene, 37904
Gm33404 1 166855120 to 166868091 12971 + lncRNA gene predicted gene, 33404
Gm6286 1 166945597 to 166946358 761 - pseudogene predicted gene 6286
Tssr14827 1 166946416 to 166946417 1 - TSS region transcription start site region 14827
Gm46169 1 166954511 to 166968739 14228 - lncRNA gene predicted gene, 46169
Gm16701 1 166974023 to 166999730 25707 - lincRNA gene predicted gene, 16701
Cpgi970 1 167000505 to 167002747 2242 CpG island CpG island 970
Tssr9877 1 167000796 to 167000818 22 + TSS region transcription start site region 9877
Tssr9878 1 167000972 to 167001017 45 + TSS region transcription start site region 9878
Tssr9879 1 167001039 to 167001071 32 + TSS region transcription start site region 9879
Fam78b 1 167001417 to 167091302 89885 + protein coding gene family with sequence similarity 78, member B
Tssr9880 1 167001419 to 167001431 12 + TSS region transcription start site region 9880
Tssr9881 1 167001432 to 167001448 16 + TSS region transcription start site region 9881
Tssr9882 1 167001457 to 167001471 14 + TSS region transcription start site region 9882
Gm33610 1 167079465 to 167105085 25620 - lncRNA gene predicted gene, 33610
D1Mit351 1 167085745 to 167085942 197 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 351
Tssr9883 1 167089117 to 167089120 3 + TSS region transcription start site region 9883
Gm33668 1 167115265 to 167119726 4461 - lncRNA gene predicted gene, 33668
Gm17868 1 167141155 to 167141822 667 + pseudogene predicted gene, 17868
Gm37994 1 167185980 to 167186388 408 - pseudogene predicted gene, 37994
Uck2 1 167222883 to 167285320 62437 - protein coding gene uridine-cytidine kinase 2
Tssr14828 1 167226356 to 167226376 20 - TSS region transcription start site region 14828
Tssr14829 1 167234810 to 167234831 21 - TSS region transcription start site region 14829
Tssr14830 1 167236622 to 167236653 31 - TSS region transcription start site region 14830
Tssr14831 1 167237521 to 167237533 12 - TSS region transcription start site region 14831
Tssr9884 1 167242409 to 167242423 14 + TSS region transcription start site region 9884
Gm37982 1 167242457 to 167251492 9035 + antisense lncRNA gene predicted gene, 37982
Tssr14832 1 167243128 to 167243163 35 - TSS region transcription start site region 14832
Tssr14833 1 167243188 to 167243189 1 - TSS region transcription start site region 14833
Tssr14834 1 167243607 to 167243616 9 - TSS region transcription start site region 14834
Tssr14835 1 167266814 to 167266817 3 - TSS region transcription start site region 14835
Gm46170 1 167266862 to 167267534 672 + lncRNA gene predicted gene, 46170
Tssr14836 1 167269607 to 167269618 11 - TSS region transcription start site region 14836
D1Mit400 1 167273099 to 167273247 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 400
Tssr14837 1 167273516 to 167273534 18 - TSS region transcription start site region 14837
Cpgi971 1 167283623 to 167285682 2059 CpG island CpG island 971
Tssr14838 1 167283905 to 167283916 11 - TSS region transcription start site region 14838
Tssr9885 1 167283913 to 167283923 10 + TSS region transcription start site region 9885
Tssr14839 1 167284637 to 167284650 13 - TSS region transcription start site region 14839
Tssr14840 1 167284667 to 167284676 9 - TSS region transcription start site region 14840
Tssr14841 1 167284703 to 167284716 13 - TSS region transcription start site region 14841
Tssr271 1 167284841 to 167284850 9 - TSS region transcription start site region 271
Tssr14842 1 167285050 to 167285068 18 - TSS region transcription start site region 14842
Tssr14843 1 167285079 to 167285103 24 - TSS region transcription start site region 14843
Tssr14844 1 167285110 to 167285122 12 - TSS region transcription start site region 14844
Tssr14845 1 167285138 to 167285149 11 - TSS region transcription start site region 14845
Tssr14846 1 167285156 to 167285167 11 - TSS region transcription start site region 14846
Gm2453 1 167285183 to 167285938 755 + lincRNA gene predicted gene 2453
Tssr272 1 167285215 to 167285230 15 - TSS region transcription start site region 272
Mir6347 1 167290125 to 167290225 100 + miRNA gene microRNA 6347
D1Mit145 1 167295046 to 167295184 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 145
Gm37232 1 167296033 to 167296399 366 - pseudogene predicted gene, 37232
Cpgi972 1 167308204 to 167309122 918 CpG island CpG island 972
Tssr273 1 167308364 to 167308411 47 + TSS region transcription start site region 273
Tssr14847 1 167308582 to 167308613 31 - TSS region transcription start site region 14847
Tssr9886 1 167308649 to 167308670 21 + TSS region transcription start site region 9886
Tmco1 1 167308670 to 167333978 25308 + protein coding gene transmembrane and coiled-coil domains 1
Tssr9887 1 167308718 to 167308807 89 + TSS region transcription start site region 9887
Tssr9888 1 167308847 to 167308858 11 + TSS region transcription start site region 9888
Tssr14848 1 167331259 to 167331306 47 - TSS region transcription start site region 14848
Tssr14849 1 167331309 to 167331326 17 - TSS region transcription start site region 14849
Tssr9889 1 167331346 to 167331379 33 + TSS region transcription start site region 9889
Cpgi973 1 167340022 to 167340760 738 CpG island CpG island 973
Gm25911 1 167340369 to 167340424 55 - miRNA gene predicted gene, 25911
Tssr14850 1 167340515 to 167340546 31 - TSS region transcription start site region 14850
Gm24182 1 167349025 to 167349131 106 + snRNA gene predicted gene, 24182
Cpgi974 1 167349869 to 167350655 786 CpG island CpG island 974
Tssr9890 1 167349976 to 167350065 89 + TSS region transcription start site region 9890
Aldh9a1 1 167349991 to 167368530 18539 + protein coding gene aldehyde dehydrogenase 9, subfamily A1
Tssr9891 1 167350151 to 167350162 11 + TSS region transcription start site region 9891
Tssr9892 1 167350165 to 167350170 5 + TSS region transcription start site region 9892
Tssr9893 1 167350184 to 167350234 50 + TSS region transcription start site region 9893
Tssr9894 1 167350246 to 167350249 3 + TSS region transcription start site region 9894
Tssr9895 1 167350276 to 167350285 9 + TSS region transcription start site region 9895
Tssr14851 1 167350360 to 167350370 10 - TSS region transcription start site region 14851
Mgst3 1 167372384 to 167393797 21413 - protein coding gene microsomal glutathione S-transferase 3
Tssr14852 1 167372417 to 167372422 5 - TSS region transcription start site region 14852
Tssr14853 1 167373521 to 167373525 4 - TSS region transcription start site region 14853
Tssr14854 1 167374541 to 167374573 32 - TSS region transcription start site region 14854
Cpgi975 1 167393581 to 167393883 302 CpG island CpG island 975
Tssr14855 1 167393775 to 167393824 49 - TSS region transcription start site region 14855
Tssr14856 1 167393826 to 167393835 9 - TSS region transcription start site region 14856
Cpgi976 1 167393950 to 167394304 354 CpG island CpG island 976
Gm34207 1 167423356 to 167455198 31842 + lncRNA gene predicted gene, 34207
Lrrc52 1 167445675 to 167466780 21105 - protein coding gene leucine rich repeat containing 52
Cpgi977 1 167445842 to 167446106 264 CpG island CpG island 977
Tssr14857 1 167466979 to 167466987 8 - TSS region transcription start site region 14857
Tssr14858 1 167467012 to 167467024 12 - TSS region transcription start site region 14858
D1Mit109 1 167468543 to 167468738 195 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 109
Tssr9896 1 167562828 to 167562837 9 + TSS region transcription start site region 9896
Cpgi978 1 167598280 to 167598973 693 CpG island CpG island 978
Tssr9897 1 167598302 to 167598325 23 + TSS region transcription start site region 9897
Tssr9898 1 167598326 to 167598351 25 + TSS region transcription start site region 9898
Tssr9899 1 167598360 to 167598374 14 + TSS region transcription start site region 9899
Rxrg 1 167598384 to 167639623 41239 + protein coding gene retinoid X receptor gamma
Tssr9900 1 167598389 to 167598411 22 + TSS region transcription start site region 9900
Tssr9901 1 167598420 to 167598438 18 + TSS region transcription start site region 9901
Tssr9902 1 167598450 to 167598476 26 + TSS region transcription start site region 9902
Tssr9903 1 167598589 to 167598618 29 + TSS region transcription start site region 9903
Tssr9904 1 167598692 to 167598729 37 + TSS region transcription start site region 9904
Cpgi979 1 167618165 to 167618562 397 CpG island CpG island 979
Tssr9905 1 167618246 to 167618299 53 + TSS region transcription start site region 9905
Cpgi980 1 167632208 to 167632718 510 CpG island CpG island 980
Cpgi981 1 167660550 to 167660742 192 CpG island CpG island 981
Cpgi982 1 167661173 to 167661469 296 CpG island CpG island 982
Cpgi983 1 167672704 to 167673019 315 CpG island CpG island 983
Cpgi984 1 167688216 to 167690198 1982 CpG island CpG island 984
Tssr9906 1 167688620 to 167688633 13 + TSS region transcription start site region 9906
Tssr14859 1 167689037 to 167689049 12 - TSS region transcription start site region 14859
Tssr9907 1 167689108 to 167689126 18 + TSS region transcription start site region 9907
Tssr9908 1 167689202 to 167689217 15 + TSS region transcription start site region 9908
Lmx1a 1 167689237 to 167848741 159504 + protein coding gene LIM homeobox transcription factor 1 alpha
Tssr14860 1 167689400 to 167689409 9 - TSS region transcription start site region 14860
Tssr9909 1 167689525 to 167689534 9 + TSS region transcription start site region 9909
Tssr9910 1 167689552 to 167689563 11 + TSS region transcription start site region 9910
Tssr9911 1 167689634 to 167689662 28 + TSS region transcription start site region 9911
Cpgi985 1 167691900 to 167692483 583 CpG island CpG island 985
D1Mit110 1 167758517 to 167758653 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 110
Liq1 1 167758517 to 191493284 23734767 QTL limb inflammation QTL 1
Cpgi986 1 167802703 to 167803636 933 CpG island CpG island 986
Skmw12 1 167929168 to 167929353 185 QTL skeletal muscle weight 12
Mop3 1 167929168 to 189571420 21642252 QTL morphine preference 3
D1Mit16 1 167929168 to 167929353 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 16
Cpgi987 1 167929781 to 167930095 314 CpG island CpG island 987
Cfcd 1 168000922 to 169211344 1210422 QTL contextual fear conditioning
D1Mit370 1 168000922 to 168001092 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 370
Gm20711 1 168004139 to 168122465 118326 + antisense lncRNA gene predicted gene 20711
Pbx1 1 168119364 to 168432264 312900 - protein coding gene pre B cell leukemia homeobox 1
Tssr14861 1 168155777 to 168155793 16 - TSS region transcription start site region 14861
Tssr14862 1 168215483 to 168215489 6 - TSS region transcription start site region 14862
Tssr14863 1 168293445 to 168293451 6 - TSS region transcription start site region 14863
Tssr14864 1 168323272 to 168323276 4 - TSS region transcription start site region 14864
Gm37524 1 168335980 to 168337671 1691 - unclassified gene predicted gene, 37524
Tssr14865 1 168343004 to 168343015 11 - TSS region transcription start site region 14865
Gm38381 1 168348534 to 168350808 2274 - unclassified gene predicted gene, 38381
D1Mit15 1 168358674 to 168358833 159 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 15
Sle1a 1 168358674 to 170239759 1881085 QTL systematic lupus erythematosus susceptibility 1a
Sluc5 1 168358674 to 168358833 159 QTL susceptibility to lung cancer 5
Nktcn1 1 168358674 to 171804689 3446015 QTL natural killer T cell numbers 1
Tssr14866 1 168370090 to 168370095 5 - TSS region transcription start site region 14866