Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:166050362-167190482

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39693 1 166049283 to 166050951 1668 + lncRNA gene predicted gene, 39693
Gm37923 1 166092415 to 166092575 160 + lincRNA gene predicted gene, 37923
Dusp27 1 166098148 to 166127898 29750 - protein coding gene dual specificity phosphatase 27 (putative)
Cpgi961 1 166100473 to 166100762 289 CpG island CpG island 961
Tssr14808 1 166121141 to 166121145 4 - TSS region transcription start site region 14808
Tssr9857 1 166125554 to 166125571 17 + TSS region transcription start site region 9857
Tssr14809 1 166126848 to 166126860 12 - TSS region transcription start site region 14809
Tssr9858 1 166126989 to 166127000 11 + TSS region transcription start site region 9858
Tssr14810 1 166127181 to 166127221 40 - TSS region transcription start site region 14810
Tssr14811 1 166127876 to 166127904 28 - TSS region transcription start site region 14811
Tssr14812 1 166127905 to 166127920 15 - TSS region transcription start site region 14812
Tssr14813 1 166127930 to 166127941 11 - TSS region transcription start site region 14813
Tssr9859 1 166130215 to 166130231 16 + TSS region transcription start site region 9859
Tssr9860 1 166130247 to 166130266 19 + TSS region transcription start site region 9860
Tssr9861 1 166130411 to 166130424 13 + TSS region transcription start site region 9861
Tssr9862 1 166130436 to 166130462 26 + TSS region transcription start site region 9862
Gpa33 1 166130460 to 166166510 36050 + protein coding gene glycoprotein A33 (transmembrane)
Tssr9863 1 166130468 to 166130479 11 + TSS region transcription start site region 9863
Tssr9864 1 166130517 to 166130528 11 + TSS region transcription start site region 9864
Cpgi962 1 166138380 to 166138596 216 CpG island CpG island 962
Tssr9865 1 166155006 to 166155017 11 + TSS region transcription start site region 9865
Cpgi963 1 166160676 to 166160835 159 CpG island CpG island 963
Tssr9866 1 166165416 to 166165428 12 + TSS region transcription start site region 9866
Tssr9867 1 166165834 to 166165843 9 + TSS region transcription start site region 9867
Mael 1 166201385 to 166238744 37359 - protein coding gene maelstrom spermatogenic transposon silencer
D1Mit401 1 166203694 to 166203790 96 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 401
Tssr14814 1 166236907 to 166236925 18 - TSS region transcription start site region 14814
Cpgi964 1 166238369 to 166238975 606 CpG island CpG island 964
Tssr14815 1 166238427 to 166238442 15 - TSS region transcription start site region 14815
Tssr14816 1 166238686 to 166238719 33 - TSS region transcription start site region 14816
Tssr14817 1 166238725 to 166238762 37 - TSS region transcription start site region 14817
Cpgi965 1 166253798 to 166254982 1184 CpG island CpG island 965
Tssr9868 1 166254050 to 166254090 40 + TSS region transcription start site region 9868
Tssr9869 1 166254095 to 166254156 61 + TSS region transcription start site region 9869
Ildr2 1 166254139 to 166316823 62684 + protein coding gene immunoglobulin-like domain containing receptor 2
Tssr9870 1 166254159 to 166254170 11 + TSS region transcription start site region 9870
Tssr9871 1 166254186 to 166254249 63 + TSS region transcription start site region 9871
Tssr9872 1 166256593 to 166256601 8 + TSS region transcription start site region 9872
Cpgi966 1 166282760 to 166282978 218 CpG island CpG island 966
5330438I03Rik 1 166306741 to 166309585 2844 - antisense lncRNA gene RIKEN cDNA 5330438I03 gene
Cpgi967 1 166308559 to 166309688 1129 CpG island CpG island 967
Tssr9873 1 166339420 to 166339427 7 + TSS region transcription start site region 9873
Gm15853 1 166377878 to 166380493 2615 - antisense lncRNA gene predicted gene 15853
Cpgi968 1 166378649 to 166380177 1528 CpG island CpG island 968
Tada1 1 166379167 to 166393621 14454 + protein coding gene transcriptional adaptor 1
Tssr9874 1 166379272 to 166379357 85 + TSS region transcription start site region 9874
Tssr9875 1 166379361 to 166379407 46 + TSS region transcription start site region 9875
Tssr14818 1 166380105 to 166380131 26 - TSS region transcription start site region 14818
Pogk 1 166393610 to 166409850 16240 - protein coding gene pogo transposable element with KRAB domain
Cpgi969 1 166409105 to 166410166 1061 CpG island CpG island 969
Tssr14819 1 166409747 to 166409753 6 - TSS region transcription start site region 14819
Tssr14820 1 166409773 to 166409849 76 - TSS region transcription start site region 14820
Gm16418 1 166431705 to 166431875 170 - pseudogene predicted pseudogene 16418
Gm39694 1 166432678 to 166441856 9178 + lncRNA gene predicted gene, 39694
Gm33354 1 166448252 to 166449157 905 - lncRNA gene predicted gene, 33354
Tssr14821 1 166464903 to 166464930 27 - TSS region transcription start site region 14821
Tssr14822 1 166483458 to 166483473 15 - TSS region transcription start site region 14822
Gm4846 1 166483613 to 166497588 13975 - protein coding gene predicted gene 4846
Tssr14823 1 166503780 to 166503792 12 - TSS region transcription start site region 14823
Tssr14824 1 166503872 to 166503878 6 - TSS region transcription start site region 14824
Tssr14825 1 166506191 to 166506195 4 - TSS region transcription start site region 14825
Gm22992 1 166620362 to 166620482 120 + miRNA gene predicted gene, 22992
Gm4847 1 166628971 to 166647693 18722 - protein coding gene predicted gene 4847
Fmo9 1 166662055 to 166681845 19790 - protein coding gene flavin containing monooxygenase 9
Tssr14826 1 166681842 to 166681847 5 - TSS region transcription start site region 14826
D1Mit57.1 1 166703894 to 166704053 159 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 57.1
D1Mit57 1 166703997 to 166704203 206 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 57
Tssr9876 1 166762132 to 166762142 10 + TSS region transcription start site region 9876
Gm4954 1 166762145 to 166770485 8340 + pseudogene predicted gene 4954
Gm37904 1 166798528 to 166798839 311 - pseudogene predicted gene, 37904
Gm33404 1 166855120 to 166868091 12971 + lncRNA gene predicted gene, 33404
Gm6286 1 166945597 to 166946358 761 - pseudogene predicted gene 6286
Tssr14827 1 166946416 to 166946417 1 - TSS region transcription start site region 14827
Gm46169 1 166954511 to 166968739 14228 - lncRNA gene predicted gene, 46169
Gm16701 1 166974023 to 166999730 25707 - lincRNA gene predicted gene, 16701
Cpgi970 1 167000505 to 167002747 2242 CpG island CpG island 970
Tssr9877 1 167000796 to 167000818 22 + TSS region transcription start site region 9877
Tssr9878 1 167000972 to 167001017 45 + TSS region transcription start site region 9878
Tssr9879 1 167001039 to 167001071 32 + TSS region transcription start site region 9879
Fam78b 1 167001417 to 167091302 89885 + protein coding gene family with sequence similarity 78, member B
Tssr9880 1 167001419 to 167001431 12 + TSS region transcription start site region 9880
Tssr9881 1 167001432 to 167001448 16 + TSS region transcription start site region 9881
Tssr9882 1 167001457 to 167001471 14 + TSS region transcription start site region 9882
Gm33610 1 167079465 to 167105085 25620 - lncRNA gene predicted gene, 33610
D1Mit351 1 167085745 to 167085942 197 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 351
Tssr9883 1 167089117 to 167089120 3 + TSS region transcription start site region 9883
Gm33668 1 167115265 to 167119726 4461 - lncRNA gene predicted gene, 33668
Gm17868 1 167141155 to 167141822 667 + pseudogene predicted gene, 17868
Gm37994 1 167185980 to 167186388 408 - pseudogene predicted gene, 37994