Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:165779159-166729170

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr9840 1 165780724 to 165780754 30 + TSS region transcription start site region 9840
Tssr9841 1 165780755 to 165780771 16 + TSS region transcription start site region 9841
Gm16565 1 165781075 to 165789367 8292 + unclassified non-coding RNA gene predicted gene 16565
Gm24808 1 165785834 to 165785951 117 - rRNA gene predicted gene, 24808
Tssr9842 1 165788659 to 165788662 3 + TSS region transcription start site region 9842
Cd247 1 165788681 to 165877277 88596 + protein coding gene CD247 antigen
Tssr9843 1 165788684 to 165788728 44 + TSS region transcription start site region 9843
Tssr9844 1 165788746 to 165788769 23 + TSS region transcription start site region 9844
Tssr14795 1 165789997 to 165790006 9 - TSS region transcription start site region 14795
Tssr14796 1 165790063 to 165790081 18 - TSS region transcription start site region 14796
Tssr9845 1 165790183 to 165790186 3 + TSS region transcription start site region 9845
Tssr9846 1 165790210 to 165790231 21 + TSS region transcription start site region 9846
A130040G06Rik 1 165797392 to 165800927 3535 unclassified non-coding RNA gene RIKEN cDNA A130040G06 gene
Tssr9847 1 165809441 to 165809455 14 + TSS region transcription start site region 9847
Gm23402 1 165809636 to 165809742 106 - snRNA gene predicted gene, 23402
Tssr9848 1 165809730 to 165809734 4 + TSS region transcription start site region 9848
D1Mit144 1 165824529 to 165824652 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 144
Tssr9849 1 165825760 to 165825777 17 + TSS region transcription start site region 9849
Tssr14797 1 165836481 to 165836505 24 - TSS region transcription start site region 14797
Tssr9850 1 165838672 to 165838676 4 + TSS region transcription start site region 9850
Tssr268 1 165838923 to 165838928 5 + TSS region transcription start site region 268
Tssr269 1 165839886 to 165839898 12 - TSS region transcription start site region 269
Cpgi956 1 165840879 to 165841197 318 CpG island CpG island 956
Tssr9851 1 165841056 to 165841067 11 + TSS region transcription start site region 9851
Tssr9852 1 165841669 to 165841682 13 + TSS region transcription start site region 9852
Gm32999 1 165844047 to 165844608 561 - lncRNA gene predicted gene, 32999
Cpgi957 1 165844856 to 165845572 716 CpG island CpG island 957
Gm37856 1 165845087 to 165846085 998 - unclassified gene predicted gene, 37856
Gm37469 1 165848155 to 165849044 889 - antisense lncRNA gene predicted gene, 37469
Tssr14798 1 165848955 to 165848987 32 - TSS region transcription start site region 14798
Tssr14799 1 165849039 to 165849050 11 - TSS region transcription start site region 14799
Tssr14800 1 165849053 to 165849073 20 - TSS region transcription start site region 14800
Tssr9853 1 165851588 to 165851591 3 + TSS region transcription start site region 9853
Tssr9854 1 165856158 to 165856206 48 + TSS region transcription start site region 9854
Tssr9855 1 165864629 to 165864634 5 + TSS region transcription start site region 9855
Tssr9856 1 165864642 to 165864660 18 + TSS region transcription start site region 9856
Pou2f1 1 165865150 to 166002672 137522 - protein coding gene POU domain, class 2, transcription factor 1
A430104F18Rik 1 165872052 to 165875279 3227 unclassified non-coding RNA gene RIKEN cDNA A430104F18 gene
A830054O07Rik 1 165883440 to 165887183 3743 unclassified gene RIKEN cDNA A830054O07 gene
Tssr14801 1 165935018 to 165935036 18 - TSS region transcription start site region 14801
Gm17976 1 165941617 to 165943505 1888 + pseudogene predicted gene, 17976
Tssr14802 1 165948535 to 165948537 2 - TSS region transcription start site region 14802
A630006J10Rik 1 165997253 to 166001285 4032 unclassified gene RIKEN cDNA A630006J10 gene
Cpgi958 1 166001367 to 166003733 2366 CpG island CpG island 958
Tssr14803 1 166002591 to 166002609 18 - TSS region transcription start site region 14803
Tssr14804 1 166002613 to 166002647 34 - TSS region transcription start site region 14804
Gm26665 1 166002960 to 166038256 35296 + lincRNA gene predicted gene, 26665
Tssr270 1 166003344 to 166003391 47 - TSS region transcription start site region 270
Gm7626 1 166043339 to 166043691 352 - pseudogene predicted gene 7626
Cpgi959 1 166043421 to 166043731 310 CpG island CpG island 959
Gm33224 1 166045452 to 166049086 3634 - lncRNA gene predicted gene, 33224
Tssr14805 1 166047823 to 166047834 11 - TSS region transcription start site region 14805
Tssr14806 1 166047841 to 166047850 9 - TSS region transcription start site region 14806
Cpgi960 1 166047863 to 166048295 432 CpG island CpG island 960
Gm39693 1 166049283 to 166050951 1668 + lncRNA gene predicted gene, 39693
Tssr14807 1 166049289 to 166049299 10 - TSS region transcription start site region 14807
Gm37923 1 166092415 to 166092575 160 + lincRNA gene predicted gene, 37923
Dusp27 1 166098148 to 166127898 29750 - protein coding gene dual specificity phosphatase 27 (putative)
Cpgi961 1 166100473 to 166100762 289 CpG island CpG island 961
Tssr14808 1 166121141 to 166121145 4 - TSS region transcription start site region 14808
Tssr9857 1 166125554 to 166125571 17 + TSS region transcription start site region 9857
Tssr14809 1 166126848 to 166126860 12 - TSS region transcription start site region 14809
Tssr9858 1 166126989 to 166127000 11 + TSS region transcription start site region 9858
Tssr14810 1 166127181 to 166127221 40 - TSS region transcription start site region 14810
Tssr14811 1 166127876 to 166127904 28 - TSS region transcription start site region 14811
Tssr14812 1 166127905 to 166127920 15 - TSS region transcription start site region 14812
Tssr14813 1 166127930 to 166127941 11 - TSS region transcription start site region 14813
Tssr9859 1 166130215 to 166130231 16 + TSS region transcription start site region 9859
Tssr9860 1 166130247 to 166130266 19 + TSS region transcription start site region 9860
Tssr9861 1 166130411 to 166130424 13 + TSS region transcription start site region 9861
Tssr9862 1 166130436 to 166130462 26 + TSS region transcription start site region 9862
Gpa33 1 166130460 to 166166510 36050 + protein coding gene glycoprotein A33 (transmembrane)
Tssr9863 1 166130468 to 166130479 11 + TSS region transcription start site region 9863
Tssr9864 1 166130517 to 166130528 11 + TSS region transcription start site region 9864
Cpgi962 1 166138380 to 166138596 216 CpG island CpG island 962
Tssr9865 1 166155006 to 166155017 11 + TSS region transcription start site region 9865
Cpgi963 1 166160676 to 166160835 159 CpG island CpG island 963
Tssr9866 1 166165416 to 166165428 12 + TSS region transcription start site region 9866
Tssr9867 1 166165834 to 166165843 9 + TSS region transcription start site region 9867
Mael 1 166201385 to 166238744 37359 - protein coding gene maelstrom spermatogenic transposon silencer
D1Mit401 1 166203694 to 166203790 96 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 401
Tssr14814 1 166236907 to 166236925 18 - TSS region transcription start site region 14814
Cpgi964 1 166238369 to 166238975 606 CpG island CpG island 964
Tssr14815 1 166238427 to 166238442 15 - TSS region transcription start site region 14815
Tssr14816 1 166238686 to 166238719 33 - TSS region transcription start site region 14816
Tssr14817 1 166238725 to 166238762 37 - TSS region transcription start site region 14817
Cpgi965 1 166253798 to 166254982 1184 CpG island CpG island 965
Tssr9868 1 166254050 to 166254090 40 + TSS region transcription start site region 9868
Tssr9869 1 166254095 to 166254156 61 + TSS region transcription start site region 9869
Ildr2 1 166254139 to 166316823 62684 + protein coding gene immunoglobulin-like domain containing receptor 2
Tssr9870 1 166254159 to 166254170 11 + TSS region transcription start site region 9870
Tssr9871 1 166254186 to 166254249 63 + TSS region transcription start site region 9871
Tssr9872 1 166256593 to 166256601 8 + TSS region transcription start site region 9872
Cpgi966 1 166282760 to 166282978 218 CpG island CpG island 966
5330438I03Rik 1 166306741 to 166309585 2844 - antisense lncRNA gene RIKEN cDNA 5330438I03 gene
Cpgi967 1 166308559 to 166309688 1129 CpG island CpG island 967
Tssr9873 1 166339420 to 166339427 7 + TSS region transcription start site region 9873
Gm15853 1 166377878 to 166380493 2615 - antisense lncRNA gene predicted gene 15853
Cpgi968 1 166378649 to 166380177 1528 CpG island CpG island 968
Tada1 1 166379167 to 166393621 14454 + protein coding gene transcriptional adaptor 1
Tssr9874 1 166379272 to 166379357 85 + TSS region transcription start site region 9874
Tssr9875 1 166379361 to 166379407 46 + TSS region transcription start site region 9875
Tssr14818 1 166380105 to 166380131 26 - TSS region transcription start site region 14818
Pogk 1 166393610 to 166409850 16240 - protein coding gene pogo transposable element with KRAB domain
Cpgi969 1 166409105 to 166410166 1061 CpG island CpG island 969
Tssr14819 1 166409747 to 166409753 6 - TSS region transcription start site region 14819
Tssr14820 1 166409773 to 166409849 76 - TSS region transcription start site region 14820
Gm16418 1 166431705 to 166431875 170 - pseudogene predicted pseudogene 16418
Gm39694 1 166432678 to 166441856 9178 + lncRNA gene predicted gene, 39694
Gm33354 1 166448252 to 166449157 905 - lncRNA gene predicted gene, 33354
Tssr14821 1 166464903 to 166464930 27 - TSS region transcription start site region 14821
Tssr14822 1 166483458 to 166483473 15 - TSS region transcription start site region 14822
Gm4846 1 166483613 to 166497588 13975 - protein coding gene predicted gene 4846
Tssr14823 1 166503780 to 166503792 12 - TSS region transcription start site region 14823
Tssr14824 1 166503872 to 166503878 6 - TSS region transcription start site region 14824
Tssr14825 1 166506191 to 166506195 4 - TSS region transcription start site region 14825
Gm22992 1 166620362 to 166620482 120 + miRNA gene predicted gene, 22992
Gm4847 1 166628971 to 166647693 18722 - protein coding gene predicted gene 4847
Fmo9 1 166662055 to 166681845 19790 - protein coding gene flavin containing monooxygenase 9
Tssr14826 1 166681842 to 166681847 5 - TSS region transcription start site region 14826
D1Mit57.1 1 166703894 to 166704053 159 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 57.1
D1Mit57 1 166703997 to 166704203 206 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 57