Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:164556509-165355395

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity3 1 131228571 to 165311895 34083324 QTL immunity to S. typhimurium 3
Tssr9793 1 164569738 to 164569765 27 + TSS region transcription start site region 9793
D630023O14Rik 1 164575455 to 164578553 3098 + unclassified gene RIKEN cDNA D630023O14 gene
Tssr9794 1 164631743 to 164631754 11 + TSS region transcription start site region 9794
Gm37754 1 164631757 to 164659238 27481 + lincRNA gene predicted gene, 37754
Gm37853 1 164640953 to 164698233 57280 - lincRNA gene predicted gene, 37853
Gm37184 1 164681982 to 164712771 30789 + lincRNA gene predicted gene, 37184
Gm36945 1 164705419 to 164712541 7122 - lincRNA gene predicted gene, 36945
D1Mit35 1 164730688 to 164730902 214 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 35
D1Mit269 1 164767786 to 164767924 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 269
Tssr9795 1 164796617 to 164796628 11 + TSS region transcription start site region 9795
Tssr9796 1 164796631 to 164796649 18 + TSS region transcription start site region 9796
Tssr9797 1 164796696 to 164796721 25 + TSS region transcription start site region 9797
Tssr9798 1 164796723 to 164796734 11 + TSS region transcription start site region 9798
Dpt 1 164796732 to 164824266 27534 + protein coding gene dermatopontin
Tssr9799 1 164796735 to 164796746 11 + TSS region transcription start site region 9799
Tssr9800 1 164796758 to 164796769 11 + TSS region transcription start site region 9800
Gm32569 1 164797009 to 164805050 8041 - antisense lncRNA gene predicted gene, 32569
Tssr9801 1 164823838 to 164823844 6 + TSS region transcription start site region 9801
Gm32652 1 164858686 to 164900207 41521 - lncRNA gene predicted gene, 32652
Gm20743 1 164863121 to 164871438 8317 + lncRNA gene predicted gene, 20743
Gm37403 1 164872833 to 164876353 3520 - unclassified gene predicted gene, 37403
Tssr14752 1 164884980 to 164884990 10 - TSS region transcription start site region 14752
Cpgi946 1 164899113 to 164899384 271 CpG island CpG island 946
Tssr14753 1 164899580 to 164899596 16 - TSS region transcription start site region 14753
Xcl1 1 164931648 to 164935510 3862 - protein coding gene chemokine (C motif) ligand 1
Tssr14754 1 164935522 to 164935527 5 - TSS region transcription start site region 14754
Tssr267 1 164949925 to 164949928 3 + TSS region transcription start site region 267
Gm39692 1 164951509 to 164960395 8886 - lncRNA gene predicted gene, 39692
1700029M03Rik 1 164960664 to 164961403 739 + lincRNA gene RIKEN cDNA 1700029M03 gene
Tssr9802 1 164960879 to 164960895 16 + TSS region transcription start site region 9802
Tssr9803 1 164960914 to 164960933 19 + TSS region transcription start site region 9803
Gm26042 1 165024345 to 165024456 111 + miRNA gene predicted gene, 26042
Hdlq99 1 165047933 to 165048047 114 QTL HDL QTL 99
Chol10 1 165047933 to 165048047 114 QTL cholesterol 10
D1Mit507 1 165047933 to 165048047 114 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 507
4930568G15Rik 1 165066617 to 165091930 25313 - lincRNA gene RIKEN cDNA 4930568G15 gene
Tssr14755 1 165091898 to 165091930 32 - TSS region transcription start site region 14755
Cpgi947 1 165120492 to 165121131 639 CpG island CpG island 947
Tbx19 1 165137855 to 165160773 22918 - protein coding gene T-box 19
Gm16550 1 165148824 to 165148949 125 - pseudogene predicted gene 16550
Tssr14756 1 165160672 to 165160685 13 - TSS region transcription start site region 14756
Tssr14757 1 165160774 to 165160781 7 - TSS region transcription start site region 14757
Tssr14758 1 165160789 to 165160793 4 - TSS region transcription start site region 14758
Sft2d2 1 165174337 to 165194438 20101 - protein coding gene SFT2 domain containing 2
Tssr14759 1 165184733 to 165184737 4 - TSS region transcription start site region 14759
D1Mit453 1 165189555 to 165189649 94 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 453
Cpgi948 1 165193833 to 165194669 836 CpG island CpG island 948
Tssr14760 1 165194289 to 165194304 15 - TSS region transcription start site region 14760
Tssr14761 1 165194310 to 165194366 56 - TSS region transcription start site region 14761
Tiprl 1 165212286 to 165236996 24710 - protein coding gene TIP41, TOR signalling pathway regulator-like (S. cerevisiae)
Tssr14762 1 165219094 to 165219105 11 - TSS region transcription start site region 14762
Tssr14763 1 165219118 to 165219126 8 - TSS region transcription start site region 14763
Tssr14764 1 165227588 to 165227597 9 - TSS region transcription start site region 14764
Gm38190 1 165230371 to 165235125 4754 - sense intronic lncRNA gene predicted gene, 38190
Cpgi949 1 165236265 to 165237409 1144 CpG island CpG island 949
Tssr9804 1 165236494 to 165236507 13 + TSS region transcription start site region 9804
Tssr14765 1 165236892 to 165236956 64 - TSS region transcription start site region 14765
Tssr14766 1 165236980 to 165236991 11 - TSS region transcription start site region 14766
Cpgi950 1 165281408 to 165282774 1366 CpG island CpG island 950
Gpr161 1 165295789 to 165326745 30956 + protein coding gene G protein-coupled receptor 161
D1Mit63 1 165311747 to 165311895 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 63
Dcaf6 1 165329500 to 165460553 131053 - protein coding gene DDB1 and CUL4 associated factor 6
Tssr14767 1 165329812 to 165329816 4 - TSS region transcription start site region 14767