Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:164222588-166232597

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309 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity3 1 131228571 to 165311895 34083324 QTL immunity to S. typhimurium 3
Cpgi942 1 164248518 to 164249763 1245 CpG island CpG island 942
Tssr9770 1 164249023 to 164249051 28 + TSS region transcription start site region 9770
Slc19a2 1 164249046 to 164265385 16339 + protein coding gene solute carrier family 19 (thiamine transporter), member 2
Tssr9771 1 164249052 to 164249096 44 + TSS region transcription start site region 9771
Tssr9772 1 164249109 to 164249126 17 + TSS region transcription start site region 9772
Tssr9773 1 164249233 to 164249286 53 + TSS region transcription start site region 9773
Tssr9774 1 164249295 to 164249306 11 + TSS region transcription start site region 9774
D1Mit108 1 164258044 to 164258191 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 108
Tssr9775 1 164263479 to 164263522 43 + TSS region transcription start site region 9775
Cpgi943 1 164275450 to 164275966 516 CpG island CpG island 943
Tssr9776 1 164275559 to 164275660 101 + TSS region transcription start site region 9776
Ccdc181 1 164275598 to 164287847 12249 + protein coding gene coiled-coil domain containing 181
Tssr9777 1 164275669 to 164275686 17 + TSS region transcription start site region 9777
Tssr9778 1 164275689 to 164275702 13 + TSS region transcription start site region 9778
Tssr9779 1 164278103 to 164278126 23 + TSS region transcription start site region 9779
Blzf1 1 164289800 to 164307484 17684 - protein coding gene basic leucine zipper nuclear factor 1
Cpgi944 1 164306918 to 164307890 972 CpG island CpG island 944
Tssr14727 1 164307181 to 164307192 11 - TSS region transcription start site region 14727
Tssr14728 1 164307200 to 164307226 26 - TSS region transcription start site region 14728
Tssr14729 1 164307229 to 164307290 61 - TSS region transcription start site region 14729
Tssr14730 1 164307443 to 164307503 60 - TSS region transcription start site region 14730
Nme7 1 164307662 to 164437300 129638 + protein coding gene NME/NM23 family member 7
Tssr9780 1 164307664 to 164307680 16 + TSS region transcription start site region 9780
Tssr9781 1 164307682 to 164307737 55 + TSS region transcription start site region 9781
Berr1 1 164315658 to 190802075 26486417 QTL berghei resistance locus 1
D1Mit203 1 164315658 to 164315806 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 203
Tssr9782 1 164373232 to 164373241 9 + TSS region transcription start site region 9782
Tssr9783 1 164373260 to 164373275 15 + TSS region transcription start site region 9783
Aath6 1 164391821 to 164391821 0 QTL aortic arch atherosclerosis 6
Pcho7 1 164391821 to 164391821 0 QTL plasma cholesterol 7
Gm39690 1 164417492 to 164418836 1344 - lncRNA gene predicted gene, 39690
Gm37411 1 164424713 to 164426994 2281 + unclassified gene predicted gene, 37411
Atp1b1 1 164437109 to 164458355 21246 - protein coding gene ATPase, Na+/K+ transporting, beta 1 polypeptide
Tssr14731 1 164437416 to 164437425 9 - TSS region transcription start site region 14731
Tssr14732 1 164437739 to 164437760 21 - TSS region transcription start site region 14732
Tssr14733 1 164437848 to 164437859 11 - TSS region transcription start site region 14733
Tssr14734 1 164437876 to 164437904 28 - TSS region transcription start site region 14734
Tssr14735 1 164437944 to 164437958 14 - TSS region transcription start site region 14735
Tssr14736 1 164437977 to 164437999 22 - TSS region transcription start site region 14736
Tssr14737 1 164438040 to 164438059 19 - TSS region transcription start site region 14737
Tssr14738 1 164438175 to 164438195 20 - TSS region transcription start site region 14738
Tssr14739 1 164438341 to 164438379 38 - TSS region transcription start site region 14739
Tssr14740 1 164438395 to 164438420 25 - TSS region transcription start site region 14740
Tssr14741 1 164438424 to 164438497 73 - TSS region transcription start site region 14741
Tssr9784 1 164438475 to 164438507 32 + TSS region transcription start site region 9784
Tssr14742 1 164438531 to 164438539 8 - TSS region transcription start site region 14742
Tssr14743 1 164441558 to 164441576 18 - TSS region transcription start site region 14743
Tssr14744 1 164441607 to 164441618 11 - TSS region transcription start site region 14744
Tssr9785 1 164443226 to 164443260 34 + TSS region transcription start site region 9785
Tssr9786 1 164443264 to 164443293 29 + TSS region transcription start site region 9786
Tssr9787 1 164453492 to 164453524 32 + TSS region transcription start site region 9787
Tssr14745 1 164453774 to 164453820 46 - TSS region transcription start site region 14745
Cpgi945 1 164457478 to 164459076 1598 CpG island CpG island 945
Tssr14746 1 164457994 to 164458012 18 - TSS region transcription start site region 14746
Tssr14747 1 164458345 to 164458363 18 - TSS region transcription start site region 14747
Tssr9788 1 164458517 to 164458530 13 + TSS region transcription start site region 9788
Tssr9789 1 164458536 to 164458547 11 + TSS region transcription start site region 9789
Tssr14748 1 164458725 to 164458737 12 - TSS region transcription start site region 14748
Gm46167 1 164459962 to 164462819 2857 - lncRNA gene predicted gene, 46167
Tssr14749 1 164460839 to 164460849 10 - TSS region transcription start site region 14749
Tssr14750 1 164460854 to 164460871 17 - TSS region transcription start site region 14750
Gm32391 1 164462442 to 164463989 1547 + lincRNA gene predicted gene, 32391
Gm32459 1 164466054 to 164467951 1897 - lncRNA gene predicted gene, 32459
Gm39691 1 164473207 to 164474120 913 + lncRNA gene predicted gene, 39691
Tssr9790 1 164473504 to 164473535 31 + TSS region transcription start site region 9790
Tssr9791 1 164488955 to 164488957 2 + TSS region transcription start site region 9791
Gm37732 1 164489060 to 164489375 315 + pseudogene predicted gene, 37732
Tssr9792 1 164503306 to 164503330 24 + TSS region transcription start site region 9792
Gm26685 1 164503309 to 164514882 11573 + lincRNA gene predicted gene, 26685
Tssr14751 1 164537560 to 164537569 9 - TSS region transcription start site region 14751
Tssr9793 1 164569738 to 164569765 27 + TSS region transcription start site region 9793
D630023O14Rik 1 164575455 to 164578553 3098 + unclassified gene RIKEN cDNA D630023O14 gene
Tssr9794 1 164631743 to 164631754 11 + TSS region transcription start site region 9794
Gm37754 1 164631757 to 164659238 27481 + lincRNA gene predicted gene, 37754
Gm37853 1 164640953 to 164698233 57280 - lincRNA gene predicted gene, 37853
Gm37184 1 164681982 to 164712771 30789 + lincRNA gene predicted gene, 37184
Gm36945 1 164705419 to 164712541 7122 - lincRNA gene predicted gene, 36945
D1Mit35 1 164730688 to 164730902 214 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 35
D1Mit269 1 164767786 to 164767924 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 269
Tssr9795 1 164796617 to 164796628 11 + TSS region transcription start site region 9795
Tssr9796 1 164796631 to 164796649 18 + TSS region transcription start site region 9796
Tssr9797 1 164796696 to 164796721 25 + TSS region transcription start site region 9797
Tssr9798 1 164796723 to 164796734 11 + TSS region transcription start site region 9798
Dpt 1 164796732 to 164824266 27534 + protein coding gene dermatopontin
Tssr9799 1 164796735 to 164796746 11 + TSS region transcription start site region 9799
Tssr9800 1 164796758 to 164796769 11 + TSS region transcription start site region 9800
Gm32569 1 164797009 to 164805050 8041 - antisense lncRNA gene predicted gene, 32569
Tssr9801 1 164823838 to 164823844 6 + TSS region transcription start site region 9801
Gm32652 1 164858686 to 164900207 41521 - lncRNA gene predicted gene, 32652
Gm20743 1 164863121 to 164871438 8317 + lncRNA gene predicted gene, 20743
Gm37403 1 164872833 to 164876353 3520 - unclassified gene predicted gene, 37403
Tssr14752 1 164884980 to 164884990 10 - TSS region transcription start site region 14752
Cpgi946 1 164899113 to 164899384 271 CpG island CpG island 946
Tssr14753 1 164899580 to 164899596 16 - TSS region transcription start site region 14753
Xcl1 1 164931648 to 164935510 3862 - protein coding gene chemokine (C motif) ligand 1
Tssr14754 1 164935522 to 164935527 5 - TSS region transcription start site region 14754
Tssr267 1 164949925 to 164949928 3 + TSS region transcription start site region 267
Gm39692 1 164951509 to 164960395 8886 - lncRNA gene predicted gene, 39692
1700029M03Rik 1 164960664 to 164961403 739 + lincRNA gene RIKEN cDNA 1700029M03 gene
Tssr9802 1 164960879 to 164960895 16 + TSS region transcription start site region 9802
Tssr9803 1 164960914 to 164960933 19 + TSS region transcription start site region 9803
Gm26042 1 165024345 to 165024456 111 + miRNA gene predicted gene, 26042
D1Mit507 1 165047933 to 165048047 114 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 507
Chol10 1 165047933 to 165048047 114 QTL cholesterol 10
Hdlq99 1 165047933 to 165048047 114 QTL HDL QTL 99
4930568G15Rik 1 165066617 to 165091930 25313 - lincRNA gene RIKEN cDNA 4930568G15 gene
Tssr14755 1 165091898 to 165091930 32 - TSS region transcription start site region 14755
Cpgi947 1 165120492 to 165121131 639 CpG island CpG island 947
Tbx19 1 165137855 to 165160773 22918 - protein coding gene T-box 19
Gm16550 1 165148824 to 165148949 125 - pseudogene predicted gene 16550
Tssr14756 1 165160672 to 165160685 13 - TSS region transcription start site region 14756
Tssr14757 1 165160774 to 165160781 7 - TSS region transcription start site region 14757
Tssr14758 1 165160789 to 165160793 4 - TSS region transcription start site region 14758
Sft2d2 1 165174337 to 165194438 20101 - protein coding gene SFT2 domain containing 2
Tssr14759 1 165184733 to 165184737 4 - TSS region transcription start site region 14759
D1Mit453 1 165189555 to 165189649 94 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 453
Cpgi948 1 165193833 to 165194669 836 CpG island CpG island 948
Tssr14760 1 165194289 to 165194304 15 - TSS region transcription start site region 14760
Tssr14761 1 165194310 to 165194366 56 - TSS region transcription start site region 14761
Tiprl 1 165212286 to 165236996 24710 - protein coding gene TIP41, TOR signalling pathway regulator-like (S. cerevisiae)
Tssr14762 1 165219094 to 165219105 11 - TSS region transcription start site region 14762
Tssr14763 1 165219118 to 165219126 8 - TSS region transcription start site region 14763
Tssr14764 1 165227588 to 165227597 9 - TSS region transcription start site region 14764
Gm38190 1 165230371 to 165235125 4754 - sense intronic lncRNA gene predicted gene, 38190
Cpgi949 1 165236265 to 165237409 1144 CpG island CpG island 949
Tssr9804 1 165236494 to 165236507 13 + TSS region transcription start site region 9804
Tssr14765 1 165236892 to 165236956 64 - TSS region transcription start site region 14765
Tssr14766 1 165236980 to 165236991 11 - TSS region transcription start site region 14766
Cpgi950 1 165281408 to 165282774 1366 CpG island CpG island 950
Gpr161 1 165295789 to 165326745 30956 + protein coding gene G protein-coupled receptor 161
D1Mit63 1 165311747 to 165311895 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 63
Dcaf6 1 165329500 to 165460553 131053 - protein coding gene DDB1 and CUL4 associated factor 6
Tssr14767 1 165329812 to 165329816 4 - TSS region transcription start site region 14767
Tssr14768 1 165377669 to 165377672 3 - TSS region transcription start site region 14768
Gm38368 1 165379519 to 165380853 1334 + unclassified gene predicted gene, 38368
Gm24637 1 165440625 to 165440709 84 + snoRNA gene predicted gene, 24637
Gm37864 1 165451555 to 165454629 3074 - sense intronic lncRNA gene predicted gene, 37864
Cpgi951 1 165459498 to 165461712 2214 CpG island CpG island 951
Tssr14769 1 165460430 to 165460487 57 - TSS region transcription start site region 14769
Tssr14770 1 165460516 to 165460549 33 - TSS region transcription start site region 14770
Tssr9805 1 165460575 to 165460642 67 + TSS region transcription start site region 9805
Tssr9806 1 165461190 to 165461239 49 + TSS region transcription start site region 9806
Mpc2 1 165461208 to 165481214 20006 + protein coding gene mitochondrial pyruvate carrier 2
Tssr9807 1 165461241 to 165461271 30 + TSS region transcription start site region 9807
Tssr9808 1 165461335 to 165461346 11 + TSS region transcription start site region 9808
Gm37860 1 165467500 to 165468533 1033 + unclassified gene predicted gene, 37860
Tssr9809 1 165485168 to 165485206 38 + TSS region transcription start site region 9809
Adcy10 1 165485183 to 165576774 91591 + protein coding gene adenylate cyclase 10
Gm6050 1 165488966 to 165489354 388 + pseudogene predicted gene 6050
Gm18186 1 165493422 to 165495001 1579 + pseudogene predicted gene, 18186
Gm38325 1 165493791 to 165495167 1376 - antisense lncRNA gene predicted gene, 38325
Gm23599 1 165497999 to 165498249 250 - unclassified non-coding RNA gene predicted gene, 23599
Gm23208 1 165571850 to 165571976 126 - snoRNA gene predicted gene, 23208
Gm38210 1 165585183 to 165585991 808 + unclassified gene predicted gene, 38210
Mpzl1 1 165592240 to 165634538 42298 - protein coding gene myelin protein zero-like 1
Tssr14771 1 165601957 to 165601960 3 - TSS region transcription start site region 14771
Gm37559 1 165613059 to 165613890 831 - pseudogene predicted gene, 37559
Tssr14772 1 165627657 to 165627661 4 - TSS region transcription start site region 14772
Cpgi952 1 165633929 to 165634851 922 CpG island CpG island 952
Tssr14773 1 165634451 to 165634576 125 - TSS region transcription start site region 14773
n-TPagg2 1 165641634 to 165641705 71 + tRNA gene nuclear encoded tRNA proline 2 (anticodon AGG)
Cpgi953 1 165641822 to 165642990 1168 CpG island CpG island 953
n-TPcgg2 1 165642271 to 165642342 71 - tRNA gene nuclear encoded tRNA proline 2 (anticodon CGG)
Gm18407 1 165643899 to 165644688 789 - pseudogene predicted gene, 18407
Rcsd1 1 165648945 to 165710063 61118 - protein coding gene RCSD domain containing 1
Tssr14774 1 165652581 to 165652590 9 - TSS region transcription start site region 14774
Tssr9810 1 165653879 to 165653886 7 + TSS region transcription start site region 9810
Tssr9811 1 165655270 to 165655286 16 + TSS region transcription start site region 9811
Tssr9812 1 165655510 to 165655539 29 + TSS region transcription start site region 9812
Tssr14775 1 165657879 to 165657892 13 - TSS region transcription start site region 14775
Tssr14776 1 165678822 to 165678843 21 - TSS region transcription start site region 14776
Tssr14777 1 165678918 to 165678940 22 - TSS region transcription start site region 14777
Tssr14778 1 165685521 to 165685525 4 - TSS region transcription start site region 14778
Tssr9813 1 165689756 to 165689767 11 + TSS region transcription start site region 9813
Gm44458 1 165694765 to 165694907 142 + miRNA gene predicted gene, 44458
Tssr14779 1 165696739 to 165696750 11 - TSS region transcription start site region 14779
Tssr14780 1 165697458 to 165697466 8 - TSS region transcription start site region 14780
Tssr14781 1 165700929 to 165700941 12 - TSS region transcription start site region 14781
Tssr14782 1 165700991 to 165701004 13 - TSS region transcription start site region 14782
Cpgi954 1 165707671 to 165708323 652 CpG island CpG island 954
Tssr14783 1 165707992 to 165708008 16 - TSS region transcription start site region 14783
Tssr14784 1 165708009 to 165708029 20 - TSS region transcription start site region 14784
Tssr14785 1 165708057 to 165708078 21 - TSS region transcription start site region 14785
Tssr14786 1 165708088 to 165708099 11 - TSS region transcription start site region 14786
Tssr9814 1 165708195 to 165708240 45 + TSS region transcription start site region 9814
Tssr14787 1 165709668 to 165709694 26 - TSS region transcription start site region 14787
Tssr14788 1 165709718 to 165709742 24 - TSS region transcription start site region 14788
Tssr14789 1 165709747 to 165709769 22 - TSS region transcription start site region 14789
Tssr14790 1 165709778 to 165709794 16 - TSS region transcription start site region 14790
Gm37073 1 165721556 to 165722777 1221 + lincRNA gene predicted gene, 37073
Tssr14791 1 165722600 to 165722610 10 - TSS region transcription start site region 14791
Tssr9815 1 165722998 to 165723048 50 + TSS region transcription start site region 9815
Tssr9816 1 165723094 to 165723100 6 + TSS region transcription start site region 9816
D1Mit539.1 1 165729139 to 165729267 128 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 539.1
D1Mit539 1 165729238 to 165729358 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 539
D1Mit539.2 1 165729335 to 165729466 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 539.2
Gm34767 1 165734600 to 165735661 1061 - pseudogene predicted gene, 34767
Gm46168 1 165747450 to 165751792 4342 - lncRNA gene predicted gene, 46168
Cpgi955 1 165763557 to 165764336 779 CpG island CpG island 955