Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:163907994-165008012

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kifap3 1 163779583 to 163917109 137526 + protein coding gene kinesin-associated protein 3
Scyl3 1 163929100 to 163955126 26026 + protein coding gene SCY1-like 3 (S. cerevisiae)
Cpgi940 1 163929678 to 163930762 1084 CpG island CpG island 940
Tssr9739 1 163929778 to 163929809 31 + TSS region transcription start site region 9739
Tssr9740 1 163930005 to 163930077 72 + TSS region transcription start site region 9740
BC055324 1 163945993 to 163994796 48803 - protein coding gene cDNA sequence BC055324
Cpgi941 1 163994265 to 163995222 957 CpG island CpG island 941
Tssr14719 1 163994737 to 163994765 28 - TSS region transcription start site region 14719
Tssr14720 1 163994767 to 163994808 41 - TSS region transcription start site region 14720
Tssr9741 1 163994866 to 163994904 38 + TSS region transcription start site region 9741
Mettl18 1 163994891 to 163997243 2352 + protein coding gene methyltransferase like 18
Tssr9742 1 163994924 to 163994935 11 + TSS region transcription start site region 9742
Tssr14721 1 164020988 to 164021012 24 - TSS region transcription start site region 14721
Gm37119 1 164031960 to 164032348 388 + pseudogene predicted gene, 37119
Tssr265 1 164039831 to 164039838 7 + TSS region transcription start site region 265
Tssr9743 1 164048214 to 164048216 2 + TSS region transcription start site region 9743
Sele 1 164048234 to 164057677 9443 + protein coding gene selectin, endothelial cell
Sell 1 164061813 to 164080785 18972 + protein coding gene selectin, lymphocyte
Tssr9744 1 164062047 to 164062058 11 + TSS region transcription start site region 9744
Tssr9745 1 164062070 to 164062098 28 + TSS region transcription start site region 9745
Tssr9746 1 164062112 to 164062124 12 + TSS region transcription start site region 9746
Tssr9747 1 164062129 to 164062170 41 + TSS region transcription start site region 9747
Tssr14722 1 164062997 to 164063008 11 - TSS region transcription start site region 14722
Tssr9748 1 164063102 to 164063109 7 + TSS region transcription start site region 9748
Tssr9749 1 164063287 to 164063304 17 + TSS region transcription start site region 9749
Tssr14723 1 164086911 to 164086922 11 - TSS region transcription start site region 14723
Tssr14724 1 164098043 to 164098074 31 - TSS region transcription start site region 14724
Selp 1 164115264 to 164150026 34762 + protein coding gene selectin, platelet
Tssr9750 1 164115290 to 164115300 10 + TSS region transcription start site region 9750
Tssr9751 1 164115302 to 164115313 11 + TSS region transcription start site region 9751
Tssr9752 1 164115319 to 164115330 11 + TSS region transcription start site region 9752
Tssr9753 1 164115331 to 164115347 16 + TSS region transcription start site region 9753
Tssr9754 1 164115350 to 164115369 19 + TSS region transcription start site region 9754
Tssr9755 1 164135668 to 164135678 10 + TSS region transcription start site region 9755
Tssr9756 1 164136202 to 164136235 33 + TSS region transcription start site region 9756
Tssr266 1 164136241 to 164136250 9 + TSS region transcription start site region 266
Gm16587 1 164143432 to 164146366 2934 - antisense lncRNA gene predicted gene 16587
Gm16548 1 164148591 to 164152217 3626 - lincRNA gene predicted gene 16548
Tssr9757 1 164151566 to 164151591 25 + TSS region transcription start site region 9757
Tssr9758 1 164151719 to 164151732 13 + TSS region transcription start site region 9758
Tssr9759 1 164151803 to 164151814 11 + TSS region transcription start site region 9759
Tssr9760 1 164151815 to 164151862 47 + TSS region transcription start site region 9760
F5 1 164151838 to 164220277 68439 + protein coding gene coagulation factor V
Tssr9761 1 164151871 to 164151882 11 + TSS region transcription start site region 9761
Tssr9762 1 164151888 to 164151897 9 + TSS region transcription start site region 9762
Tssr9763 1 164152023 to 164152044 21 + TSS region transcription start site region 9763
Tssr14725 1 164152936 to 164152962 26 - TSS region transcription start site region 14725
Gm16588 1 164166579 to 164166933 354 + pseudogene predicted gene 16588
Tssr14726 1 164181410 to 164181412 2 - TSS region transcription start site region 14726
Tssr9764 1 164181705 to 164181715 10 + TSS region transcription start site region 9764
Tssr9765 1 164193042 to 164193053 11 + TSS region transcription start site region 9765
Tssr9766 1 164193061 to 164193070 9 + TSS region transcription start site region 9766
Tssr9767 1 164193367 to 164193377 10 + TSS region transcription start site region 9767
Tssr9768 1 164193441 to 164193465 24 + TSS region transcription start site region 9768
Tssr9769 1 164220013 to 164220017 4 + TSS region transcription start site region 9769
Cpgi942 1 164248518 to 164249763 1245 CpG island CpG island 942
Tssr9770 1 164249023 to 164249051 28 + TSS region transcription start site region 9770
Slc19a2 1 164249046 to 164265385 16339 + protein coding gene solute carrier family 19 (thiamine transporter), member 2
Tssr9771 1 164249052 to 164249096 44 + TSS region transcription start site region 9771
Tssr9772 1 164249109 to 164249126 17 + TSS region transcription start site region 9772
Tssr9773 1 164249233 to 164249286 53 + TSS region transcription start site region 9773
Tssr9774 1 164249295 to 164249306 11 + TSS region transcription start site region 9774
D1Mit108 1 164258044 to 164258191 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 108
Tssr9775 1 164263479 to 164263522 43 + TSS region transcription start site region 9775
Cpgi943 1 164275450 to 164275966 516 CpG island CpG island 943
Tssr9776 1 164275559 to 164275660 101 + TSS region transcription start site region 9776
Ccdc181 1 164275598 to 164287847 12249 + protein coding gene coiled-coil domain containing 181
Tssr9777 1 164275669 to 164275686 17 + TSS region transcription start site region 9777
Tssr9778 1 164275689 to 164275702 13 + TSS region transcription start site region 9778
Tssr9779 1 164278103 to 164278126 23 + TSS region transcription start site region 9779
Blzf1 1 164289800 to 164307484 17684 - protein coding gene basic leucine zipper nuclear factor 1
Cpgi944 1 164306918 to 164307890 972 CpG island CpG island 944
Tssr14727 1 164307181 to 164307192 11 - TSS region transcription start site region 14727
Tssr14728 1 164307200 to 164307226 26 - TSS region transcription start site region 14728
Tssr14729 1 164307229 to 164307290 61 - TSS region transcription start site region 14729
Tssr14730 1 164307443 to 164307503 60 - TSS region transcription start site region 14730
Nme7 1 164307662 to 164437300 129638 + protein coding gene NME/NM23 family member 7
Tssr9780 1 164307664 to 164307680 16 + TSS region transcription start site region 9780
Tssr9781 1 164307682 to 164307737 55 + TSS region transcription start site region 9781
Berr1 1 164315658 to 190802075 26486417 QTL berghei resistance locus 1
D1Mit203 1 164315658 to 164315806 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 203
Tssr9782 1 164373232 to 164373241 9 + TSS region transcription start site region 9782
Tssr9783 1 164373260 to 164373275 15 + TSS region transcription start site region 9783
Pcho7 1 164391821 to 164391821 0 QTL plasma cholesterol 7
Aath6 1 164391821 to 164391821 0 QTL aortic arch atherosclerosis 6
Gm39690 1 164417492 to 164418836 1344 - lncRNA gene predicted gene, 39690
Gm37411 1 164424713 to 164426994 2281 + unclassified gene predicted gene, 37411
Atp1b1 1 164437109 to 164458355 21246 - protein coding gene ATPase, Na+/K+ transporting, beta 1 polypeptide
Tssr14731 1 164437416 to 164437425 9 - TSS region transcription start site region 14731
Tssr14732 1 164437739 to 164437760 21 - TSS region transcription start site region 14732
Tssr14733 1 164437848 to 164437859 11 - TSS region transcription start site region 14733
Tssr14734 1 164437876 to 164437904 28 - TSS region transcription start site region 14734
Tssr14735 1 164437944 to 164437958 14 - TSS region transcription start site region 14735
Tssr14736 1 164437977 to 164437999 22 - TSS region transcription start site region 14736
Tssr14737 1 164438040 to 164438059 19 - TSS region transcription start site region 14737
Tssr14738 1 164438175 to 164438195 20 - TSS region transcription start site region 14738
Tssr14739 1 164438341 to 164438379 38 - TSS region transcription start site region 14739
Tssr14740 1 164438395 to 164438420 25 - TSS region transcription start site region 14740
Tssr14741 1 164438424 to 164438497 73 - TSS region transcription start site region 14741
Tssr9784 1 164438475 to 164438507 32 + TSS region transcription start site region 9784
Tssr14742 1 164438531 to 164438539 8 - TSS region transcription start site region 14742
Tssr14743 1 164441558 to 164441576 18 - TSS region transcription start site region 14743
Tssr14744 1 164441607 to 164441618 11 - TSS region transcription start site region 14744
Tssr9785 1 164443226 to 164443260 34 + TSS region transcription start site region 9785
Tssr9786 1 164443264 to 164443293 29 + TSS region transcription start site region 9786
Tssr9787 1 164453492 to 164453524 32 + TSS region transcription start site region 9787
Tssr14745 1 164453774 to 164453820 46 - TSS region transcription start site region 14745
Cpgi945 1 164457478 to 164459076 1598 CpG island CpG island 945
Tssr14746 1 164457994 to 164458012 18 - TSS region transcription start site region 14746
Tssr14747 1 164458345 to 164458363 18 - TSS region transcription start site region 14747
Tssr9788 1 164458517 to 164458530 13 + TSS region transcription start site region 9788
Tssr9789 1 164458536 to 164458547 11 + TSS region transcription start site region 9789
Tssr14748 1 164458725 to 164458737 12 - TSS region transcription start site region 14748
Gm46167 1 164459962 to 164462819 2857 - lncRNA gene predicted gene, 46167
Tssr14749 1 164460839 to 164460849 10 - TSS region transcription start site region 14749
Tssr14750 1 164460854 to 164460871 17 - TSS region transcription start site region 14750
Gm32391 1 164462442 to 164463989 1547 + lincRNA gene predicted gene, 32391
Gm32459 1 164466054 to 164467951 1897 - lncRNA gene predicted gene, 32459
Gm39691 1 164473207 to 164474120 913 + lncRNA gene predicted gene, 39691
Tssr9790 1 164473504 to 164473535 31 + TSS region transcription start site region 9790
Tssr9791 1 164488955 to 164488957 2 + TSS region transcription start site region 9791
Gm37732 1 164489060 to 164489375 315 + pseudogene predicted gene, 37732
Tssr9792 1 164503306 to 164503330 24 + TSS region transcription start site region 9792
Gm26685 1 164503309 to 164514882 11573 + lincRNA gene predicted gene, 26685
Tssr14751 1 164537560 to 164537569 9 - TSS region transcription start site region 14751
Tssr9793 1 164569738 to 164569765 27 + TSS region transcription start site region 9793
D630023O14Rik 1 164575455 to 164578553 3098 + unclassified gene RIKEN cDNA D630023O14 gene
Tssr9794 1 164631743 to 164631754 11 + TSS region transcription start site region 9794
Gm37754 1 164631757 to 164659238 27481 + lincRNA gene predicted gene, 37754
Gm37853 1 164640953 to 164698233 57280 - lincRNA gene predicted gene, 37853
Gm37184 1 164681982 to 164712771 30789 + lincRNA gene predicted gene, 37184
Gm36945 1 164705419 to 164712541 7122 - lincRNA gene predicted gene, 36945
D1Mit35 1 164730688 to 164730902 214 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 35
D1Mit269 1 164767786 to 164767924 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 269
Tssr9795 1 164796617 to 164796628 11 + TSS region transcription start site region 9795
Tssr9796 1 164796631 to 164796649 18 + TSS region transcription start site region 9796
Tssr9797 1 164796696 to 164796721 25 + TSS region transcription start site region 9797
Tssr9798 1 164796723 to 164796734 11 + TSS region transcription start site region 9798
Dpt 1 164796732 to 164824266 27534 + protein coding gene dermatopontin
Tssr9799 1 164796735 to 164796746 11 + TSS region transcription start site region 9799
Tssr9800 1 164796758 to 164796769 11 + TSS region transcription start site region 9800
Gm32569 1 164797009 to 164805050 8041 - antisense lncRNA gene predicted gene, 32569
Tssr9801 1 164823838 to 164823844 6 + TSS region transcription start site region 9801
Gm32652 1 164858686 to 164900207 41521 - lncRNA gene predicted gene, 32652
Gm20743 1 164863121 to 164871438 8317 + lncRNA gene predicted gene, 20743
Gm37403 1 164872833 to 164876353 3520 - unclassified gene predicted gene, 37403
Tssr14752 1 164884980 to 164884990 10 - TSS region transcription start site region 14752
Cpgi946 1 164899113 to 164899384 271 CpG island CpG island 946
Tssr14753 1 164899580 to 164899596 16 - TSS region transcription start site region 14753
Xcl1 1 164931648 to 164935510 3862 - protein coding gene chemokine (C motif) ligand 1
Tssr14754 1 164935522 to 164935527 5 - TSS region transcription start site region 14754
Tssr267 1 164949925 to 164949928 3 + TSS region transcription start site region 267
Gm39692 1 164951509 to 164960395 8886 - lncRNA gene predicted gene, 39692
1700029M03Rik 1 164960664 to 164961403 739 + lincRNA gene RIKEN cDNA 1700029M03 gene
Tssr9802 1 164960879 to 164960895 16 + TSS region transcription start site region 9802
Tssr9803 1 164960914 to 164960933 19 + TSS region transcription start site region 9803