Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:163222377-163995269

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prrx1 1 163245119 to 163313705 68586 - protein coding gene paired related homeobox 1
Gm20471 1 163280356 to 163287045 6689 + antisense lncRNA gene predicted gene 20471
Tssr14695 1 163289214 to 163289235 21 - TSS region transcription start site region 14695
Tssr14696 1 163289322 to 163289338 16 - TSS region transcription start site region 14696
Gm26523 1 163301790 to 163303620 1830 - lincRNA gene predicted gene, 26523
Tssr14697 1 163304517 to 163304520 3 - TSS region transcription start site region 14697
D1Mit506 1 163306348 to 163306466 118 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 506
Gm37644 1 163306798 to 163309067 2269 - unclassified gene predicted gene, 37644
Cpgi935 1 163308746 to 163308926 180 CpG island CpG island 935
Cpgi936 1 163311774 to 163312713 939 CpG island CpG island 936
Tssr14698 1 163312420 to 163312423 3 - TSS region transcription start site region 14698
Tssr14699 1 163312521 to 163312543 22 - TSS region transcription start site region 14699
Tssr14700 1 163312570 to 163312585 15 - TSS region transcription start site region 14700
Tssr14701 1 163312595 to 163312645 50 - TSS region transcription start site region 14701
Tssr14702 1 163312707 to 163312732 25 - TSS region transcription start site region 14702
Tssr14703 1 163312949 to 163312953 4 - TSS region transcription start site region 14703
Tssr14704 1 163313005 to 163313006 1 - TSS region transcription start site region 14704
Tssr262 1 163313018 to 163313023 5 - TSS region transcription start site region 262
Tssr14705 1 163313066 to 163313076 10 - TSS region transcription start site region 14705
Tssr14706 1 163313141 to 163313152 11 - TSS region transcription start site region 14706
Tssr14707 1 163313248 to 163313271 23 - TSS region transcription start site region 14707
Tssr14708 1 163313460 to 163313494 34 - TSS region transcription start site region 14708
Tssr14709 1 163313507 to 163313518 11 - TSS region transcription start site region 14709
Tssr14710 1 163313522 to 163313533 11 - TSS region transcription start site region 14710
Tssr14711 1 163313661 to 163313677 16 - TSS region transcription start site region 14711
Tssr14712 1 163313693 to 163313696 3 - TSS region transcription start site region 14712
Tssr263 1 163313709 to 163313712 3 - TSS region transcription start site region 263
Tssr14713 1 163313847 to 163313861 14 - TSS region transcription start site region 14713
Tssr14714 1 163314113 to 163314123 10 - TSS region transcription start site region 14714
Tssr14715 1 163314438 to 163314464 26 - TSS region transcription start site region 14715
Cpgi937 1 163314999 to 163315266 267 CpG island CpG island 937
Tssr9725 1 163358382 to 163358387 5 + TSS region transcription start site region 9725
Gorab 1 163384908 to 163403669 18761 - protein coding gene golgin, RAB6-interacting
Gm24940 1 163402283 to 163402390 107 + snRNA gene predicted gene, 24940
Cpgi938 1 163403462 to 163404008 546 CpG island CpG island 938
Tssr14716 1 163403604 to 163403619 15 - TSS region transcription start site region 14716
Tssr14717 1 163403627 to 163403679 52 - TSS region transcription start site region 14717
D1Mit143 1 163500821 to 163501011 190 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 143
Gm32333 1 163537734 to 163617907 80173 - lncRNA gene predicted gene, 32333
Gm39689 1 163579301 to 163592668 13367 + lncRNA gene predicted gene, 39689
Gm29500 1 163607377 to 163610269 2892 + lincRNA gene predicted gene 29500
Rpsa-ps1 1 163623793 to 163624678 885 + pseudogene ribosomal protein SA, pseudogene 1
Mettl11b 1 163702993 to 163725232 22239 - protein coding gene methyltransferase like 11B
Tssr14718 1 163725123 to 163725136 13 - TSS region transcription start site region 14718
Gm2343 1 163729571 to 163730612 1041 + pseudogene predicted gene 2343
Tssr9726 1 163762125 to 163762126 1 + TSS region transcription start site region 9726
Tssr9727 1 163762129 to 163762153 24 + TSS region transcription start site region 9727
Tssr9728 1 163762159 to 163762174 15 + TSS region transcription start site region 9728
Tssr9729 1 163762176 to 163762198 22 + TSS region transcription start site region 9729
Tssr9730 1 163762202 to 163762207 5 + TSS region transcription start site region 9730
Cpgi939 1 163779375 to 163780054 679 CpG island CpG island 939
Tssr9731 1 163779559 to 163779570 11 + TSS region transcription start site region 9731
Tssr9732 1 163779575 to 163779592 17 + TSS region transcription start site region 9732
Kifap3 1 163779583 to 163917109 137526 + protein coding gene kinesin-associated protein 3
Tssr9733 1 163779594 to 163779631 37 + TSS region transcription start site region 9733
Tssr9734 1 163779635 to 163779705 70 + TSS region transcription start site region 9734
Tssr9735 1 163779709 to 163779744 35 + TSS region transcription start site region 9735
Tssr9736 1 163779745 to 163779763 18 + TSS region transcription start site region 9736
Tssr9737 1 163779811 to 163779865 54 + TSS region transcription start site region 9737
Tssr264 1 163887821 to 163887832 11 + TSS region transcription start site region 264
Tssr9738 1 163903683 to 163903688 5 + TSS region transcription start site region 9738
Scyl3 1 163929100 to 163955126 26026 + protein coding gene SCY1-like 3 (S. cerevisiae)
Cpgi940 1 163929678 to 163930762 1084 CpG island CpG island 940
Tssr9739 1 163929778 to 163929809 31 + TSS region transcription start site region 9739
Tssr9740 1 163930005 to 163930077 72 + TSS region transcription start site region 9740
BC055324 1 163945993 to 163994796 48803 - protein coding gene cDNA sequence BC055324
Cpgi941 1 163994265 to 163995222 957 CpG island CpG island 941
Tssr14719 1 163994737 to 163994765 28 - TSS region transcription start site region 14719
Tssr14720 1 163994767 to 163994808 41 - TSS region transcription start site region 14720
Tssr9741 1 163994866 to 163994904 38 + TSS region transcription start site region 9741
Mettl18 1 163994891 to 163997243 2352 + protein coding gene methyltransferase like 18
Tssr9742 1 163994924 to 163994935 11 + TSS region transcription start site region 9742