Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:161687453-162773034

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmd1a 1 155962068 to 162317756 6355688 QTL bone mineral density 1a
Actre11 1 160457095 to 162012496 1555401 QTL activity response to ethanol 11
Tssr9691 1 161701371 to 161701383 12 + TSS region transcription start site region 9691
D1Mit266.1 1 161703636 to 161703749 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 266.1
D1Mit266 1 161703778 to 161704023 245 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 266
Opfa 1 161703778 to 161704023 245 QTL open field activity
Tssr14583 1 161704659 to 161704679 20 - TSS region transcription start site region 14583
Tssr9692 1 161704823 to 161704834 11 + TSS region transcription start site region 9692
Tssr9693 1 161704865 to 161704871 6 + TSS region transcription start site region 9693
Tssr9694 1 161705497 to 161705516 19 + TSS region transcription start site region 9694
Tssr9695 1 161706069 to 161706073 4 + TSS region transcription start site region 9695
Cpgi927 1 161712996 to 161713168 172 CpG island CpG island 927
Gm37638 1 161713705 to 161714827 1122 + unclassified gene predicted gene, 37638
Gm15429 1 161726242 to 161727489 1247 - pseudogene predicted pseudogene 15429
Gm5049 1 161746185 to 161747645 1460 + pseudogene predicted gene 5049
Tssr9696 1 161747540 to 161747551 11 + TSS region transcription start site region 9696
Gm31869 1 161762401 to 161767502 5101 - lncRNA gene predicted gene, 31869
Tssr9697 1 161766041 to 161766069 28 + TSS region transcription start site region 9697
Tssr14584 1 161766723 to 161766733 10 - TSS region transcription start site region 14584
Tssr14585 1 161775189 to 161775206 17 - TSS region transcription start site region 14585
D1Ins1 1 161779041 to 161779155 114 DNA segment DNA segment, INSERM 1
Fasl 1 161780691 to 161788495 7804 - protein coding gene Fas ligand (TNF superfamily, member 6)
Tssr14586 1 161788359 to 161788375 16 - TSS region transcription start site region 14586
Tssr14587 1 161788449 to 161788456 7 - TSS region transcription start site region 14587
Tssr14588 1 161788464 to 161788471 7 - TSS region transcription start site region 14588
Tssr14589 1 161788472 to 161788483 11 - TSS region transcription start site region 14589
Tssr14590 1 161788489 to 161788496 7 - TSS region transcription start site region 14590
Tssr14591 1 161788500 to 161788506 6 - TSS region transcription start site region 14591
Tssr14592 1 161793248 to 161793252 4 - TSS region transcription start site region 14592
Tssr14593 1 161794564 to 161794600 36 - TSS region transcription start site region 14593
Gm37357 1 161811045 to 161814167 3122 - unclassified gene predicted gene, 37357
Suco 1 161816114 to 161876682 60568 - protein coding gene SUN domain containing ossification factor
Tssr14594 1 161816706 to 161816709 3 - TSS region transcription start site region 14594
Gm7496 1 161821865 to 161823068 1203 + pseudogene predicted gene 7496
Tssr14595 1 161834496 to 161834510 14 - TSS region transcription start site region 14595
Tssr14596 1 161852782 to 161852786 4 - TSS region transcription start site region 14596
Tssr14597 1 161855550 to 161855561 11 - TSS region transcription start site region 14597
Tssr9698 1 161864461 to 161864462 1 + TSS region transcription start site region 9698
Tssr14598 1 161867110 to 161867115 5 - TSS region transcription start site region 14598
Tssr9699 1 161876011 to 161876041 30 + TSS region transcription start site region 9699
Cpgi928 1 161876159 to 161877141 982 CpG island CpG island 928
Tssr14599 1 161876588 to 161876607 19 - TSS region transcription start site region 14599
Tssr14600 1 161876610 to 161876647 37 - TSS region transcription start site region 14600
Tssr14601 1 161876656 to 161876682 26 - TSS region transcription start site region 14601
Tssr14602 1 161876747 to 161876759 12 - TSS region transcription start site region 14602
Tssr14603 1 161876780 to 161876821 41 - TSS region transcription start site region 14603
Tssr14604 1 161876834 to 161876854 20 - TSS region transcription start site region 14604
Tssr9700 1 161877853 to 161877865 12 + TSS region transcription start site region 9700
Gm31925 1 161890458 to 161903173 12715 + lincRNA gene predicted gene, 31925
Tssr14605 1 161896170 to 161896174 4 - TSS region transcription start site region 14605
Tssr9701 1 161896346 to 161896358 12 + TSS region transcription start site region 9701
Tssr9702 1 161896368 to 161896381 13 + TSS region transcription start site region 9702
Tssr9703 1 161896382 to 161896385 3 + TSS region transcription start site region 9703
Tssr9704 1 161896392 to 161896397 5 + TSS region transcription start site region 9704
Tssr14606 1 161897331 to 161897341 10 - TSS region transcription start site region 14606
4930558K02Rik 1 161942086 to 161979636 37550 - protein coding gene RIKEN cDNA 4930558K02 gene
Tssr9705 1 161968953 to 161968971 18 + TSS region transcription start site region 9705
Cpgi929 1 161968983 to 161969552 569 CpG island CpG island 929
Tssr14607 1 161969159 to 161969190 31 - TSS region transcription start site region 14607
Tssr9706 1 161969179 to 161969259 80 + TSS region transcription start site region 9706
Pigc 1 161969186 to 161973435 4249 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class C
Gm38304 1 161969200 to 162027106 57906 + antisense lncRNA gene predicted gene, 38304
Tssr9707 1 161969284 to 161969313 29 + TSS region transcription start site region 9707
Tssr14608 1 161979656 to 161979681 25 - TSS region transcription start site region 14608
Tssr14609 1 161979684 to 161979687 3 - TSS region transcription start site region 14609
Tssr14610 1 161979700 to 161979705 5 - TSS region transcription start site region 14610
D1Pgn2 1 161981984 to 161982159 175 DNA segment DNA segment, Chr 1, Paigen 2
Dnm3 1 161982453 to 162478034 495581 - protein coding gene dynamin 3
Tssr14611 1 161985701 to 161985704 3 - TSS region transcription start site region 14611
2810442N19Rik 1 162004969 to 162016485 11516 + antisense lncRNA gene RIKEN cDNA 2810442N19 gene
D1Mit504 1 162012348 to 162012496 148 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 504
Tssr14612 1 162028710 to 162028714 4 - TSS region transcription start site region 14612
D1Pgn5 1 162035011 to 162035207 196 DNA segment DNA segment, Chr 1, Paigen 5
D1Mit398 1 162036074 to 162036174 100 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 398
Gm37767 1 162086635 to 162088468 1833 - unclassified gene predicted gene, 37767
Tssr14613 1 162134704 to 162134733 29 - TSS region transcription start site region 14613
Tssr14614 1 162188851 to 162188859 8 - TSS region transcription start site region 14614
D1Mit505 1 162210337 to 162210475 138 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 505
Tssr9708 1 162217487 to 162217508 21 + TSS region transcription start site region 9708
Dnm3os 1 162217623 to 162225550 7927 + antisense lncRNA gene dynamin 3, opposite strand
Tssr9709 1 162217657 to 162217671 14 + TSS region transcription start site region 9709
Tssr9710 1 162217688 to 162217717 29 + TSS region transcription start site region 9710
Mir199a-2 1 162217814 to 162217923 109 + miRNA gene microRNA 199a-2
Tssr9711 1 162217903 to 162217906 3 + TSS region transcription start site region 9711
Tssr9712 1 162218852 to 162218856 4 + TSS region transcription start site region 9712
Tssr9713 1 162221295 to 162221299 4 + TSS region transcription start site region 9713
Mir214 1 162223368 to 162223477 109 + miRNA gene microRNA 214
Tssr9714 1 162223459 to 162223461 2 + TSS region transcription start site region 9714
Tssr14615 1 162246773 to 162246775 2 - TSS region transcription start site region 14615
Aath2 1 162250061 to 162250061 0 QTL aortic arch atherosclerosis 2
Tssr14616 1 162274621 to 162274626 5 - TSS region transcription start site region 14616
Gm16101 1 162316092 to 162316521 429 + pseudogene predicted gene 16101
Cfbw1 1 162317638 to 162317756 118 QTL cystic fibrosis body weight 1
D1Mit106 1 162317638 to 162317756 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 106
Elnt 1 162317638 to 194429220 32111582 QTL escape latencies during navigation task
D1Mit107 1 162365239 to 162365340 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 107
Gm39688 1 162379896 to 162386091 6195 + lncRNA gene predicted gene, 39688
Tssr14617 1 162387215 to 162387216 1 - TSS region transcription start site region 14617
Mdq20 1 162458462 to 162458462 0 QTL mammary ductal QTL 20
Tssr14618 1 162460222 to 162460227 5 - TSS region transcription start site region 14618
Gm31985 1 162471426 to 162481653 10227 + lncRNA gene predicted gene, 31985
Cpgi930 1 162477233 to 162478277 1044 CpG island CpG island 930
Gm10176 1 162477680 to 162479943 2263 + protein coding gene predicted gene 10176
Tssr14619 1 162477946 to 162478001 55 - TSS region transcription start site region 14619
Tssr14620 1 162478004 to 162478022 18 - TSS region transcription start site region 14620
Gm46247 1 162500716 to 162500955 239 - pseudogene predicted gene, 46247
Eef1aknmt 1 162533671 to 162548345 14674 - protein coding gene EEF1A lysine and N-terminal methyltransferase
Cpgi931 1 162548198 to 162548755 557 CpG island CpG island 931
Tssr14621 1 162548484 to 162548545 61 - TSS region transcription start site region 14621
Cpgi932 1 162570262 to 162571613 1351 CpG island CpG island 932
Tssr14622 1 162570282 to 162570322 40 - TSS region transcription start site region 14622
Vamp4 1 162570515 to 162599084 28569 + protein coding gene vesicle-associated membrane protein 4
Tssr9715 1 162570597 to 162570656 59 + TSS region transcription start site region 9715
Tssr9716 1 162570667 to 162570672 5 + TSS region transcription start site region 9716
Tssr9717 1 162570687 to 162570755 68 + TSS region transcription start site region 9717
Tssr14623 1 162571349 to 162571365 16 - TSS region transcription start site region 14623
Tssr14624 1 162571368 to 162571375 7 - TSS region transcription start site region 14624
Tssr14625 1 162571395 to 162571408 13 - TSS region transcription start site region 14625
Tssr14626 1 162571433 to 162571442 9 - TSS region transcription start site region 14626
Tssr14627 1 162571473 to 162571487 14 - TSS region transcription start site region 14627
Tssr14628 1 162571494 to 162571505 11 - TSS region transcription start site region 14628
Tssr14629 1 162571539 to 162571540 1 - TSS region transcription start site region 14629
Tssr9718 1 162571628 to 162571641 13 + TSS region transcription start site region 9718
Tssr9719 1 162581807 to 162581839 32 + TSS region transcription start site region 9719
Tssr9720 1 162588206 to 162588217 11 + TSS region transcription start site region 9720
D1Mit399 1 162614243 to 162614380 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 399
Gm5705 1 162628357 to 162629067 710 - pseudogene predicted gene 5705
Tssr9721 1 162639148 to 162639158 10 + TSS region transcription start site region 9721
Myoc 1 162639155 to 162649693 10538 + protein coding gene myocilin
Myocos 1 162647193 to 162658219 11026 - protein coding gene myocilin opposite strand
Cpgi933 1 162648777 to 162649055 278 CpG island CpG island 933
Prrc2c 1 162671785 to 162740570 68785 - protein coding gene proline-rich coiled-coil 2C
Tssr14630 1 162672149 to 162672152 3 - TSS region transcription start site region 14630
Gm27616 1 162674158 to 162674220 62 - miRNA gene predicted gene, 27616
Tssr14631 1 162675209 to 162675213 4 - TSS region transcription start site region 14631
Tssr14632 1 162675487 to 162675542 55 - TSS region transcription start site region 14632
Tssr14633 1 162675877 to 162675881 4 - TSS region transcription start site region 14633
Tssr14634 1 162688172 to 162688187 15 - TSS region transcription start site region 14634
Tssr14635 1 162692404 to 162692437 33 - TSS region transcription start site region 14635
Tssr14636 1 162692825 to 162692838 13 - TSS region transcription start site region 14636
Tssr14637 1 162702208 to 162702231 23 - TSS region transcription start site region 14637
Tssr14638 1 162702235 to 162702246 11 - TSS region transcription start site region 14638
Tssr14639 1 162702252 to 162702266 14 - TSS region transcription start site region 14639
Tssr14640 1 162705544 to 162705564 20 - TSS region transcription start site region 14640
Tssr14641 1 162706130 to 162706145 15 - TSS region transcription start site region 14641
Tssr14642 1 162706177 to 162706191 14 - TSS region transcription start site region 14642
Tssr14643 1 162707828 to 162707843 15 - TSS region transcription start site region 14643
Tssr14644 1 162709588 to 162709604 16 - TSS region transcription start site region 14644
Tssr9722 1 162710345 to 162710505 160 + TSS region transcription start site region 9722
Tssr14645 1 162710416 to 162710428 12 - TSS region transcription start site region 14645
Tssr14646 1 162710458 to 162710482 24 - TSS region transcription start site region 14646
Tssr14647 1 162710502 to 162710515 13 - TSS region transcription start site region 14647
Tssr14648 1 162710751 to 162710801 50 - TSS region transcription start site region 14648
Tssr14649 1 162713341 to 162713360 19 - TSS region transcription start site region 14649
Tssr14650 1 162714376 to 162714384 8 - TSS region transcription start site region 14650
Tssr14651 1 162715456 to 162715484 28 - TSS region transcription start site region 14651
Tssr14652 1 162715694 to 162715712 18 - TSS region transcription start site region 14652
Tssr14653 1 162724764 to 162724780 16 - TSS region transcription start site region 14653
Tssr14654 1 162724789 to 162724813 24 - TSS region transcription start site region 14654
Tssr14655 1 162724824 to 162724857 33 - TSS region transcription start site region 14655
D1Ertd646e 1 162726290 to 162726489 199 DNA segment DNA segment, Chr 1, ERATO Doi 646, expressed
Cpgi934 1 162739784 to 162740806 1022 CpG island CpG island 934
Tssr14656 1 162740491 to 162740533 42 - TSS region transcription start site region 14656
Tssr14657 1 162740540 to 162740551 11 - TSS region transcription start site region 14657