Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:161035497-162375516

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmd1a 1 155962068 to 162317756 6355688 QTL bone mineral density 1a
Actre11 1 160457095 to 162012496 1555401 QTL activity response to ethanol 11
Cpgi921 1 161034231 to 161035662 1431 CpG island CpG island 921
Gas5 1 161035166 to 161038537 3371 + lncRNA gene growth arrest specific 5
Tssr9675 1 161035523 to 161035542 19 + TSS region transcription start site region 9675
Tssr9676 1 161035848 to 161035852 4 + TSS region transcription start site region 9676
Gm22489 1 161035850 to 161035911 61 + snoRNA gene predicted gene, 22489
Tssr9677 1 161036053 to 161036066 13 + TSS region transcription start site region 9677
Gm22357 1 161036057 to 161036139 82 + snoRNA gene predicted gene, 22357
Gm23212 1 161036682 to 161036741 59 + snoRNA gene predicted gene, 23212
Snord78 1 161036984 to 161037049 65 + snoRNA gene small nucleolar RNA, C/D box 78
Mir5117 1 161037356 to 161037439 83 + miRNA gene microRNA 5117
Tssr9678 1 161037602 to 161037613 11 + TSS region transcription start site region 9678
Snord80 1 161037604 to 161037680 76 + snoRNA gene small nucleolar RNA, C/D box 80
Snord47 1 161038092 to 161038156 64 + snoRNA gene small nucleolar RNA, C/D box 47
Gm25789 1 161038308 to 161038383 75 + snoRNA gene predicted gene, 25789
Tssr14567 1 161038530 to 161038537 7 - TSS region transcription start site region 14567
Dars2 1 161040601 to 161070658 30057 - protein coding gene aspartyl-tRNA synthetase 2 (mitochondrial)
Gm37634 1 161040620 to 161041414 794 + antisense lncRNA gene predicted gene, 37634
Cpgi922 1 161070141 to 161071164 1023 CpG island CpG island 922
Tssr14568 1 161070613 to 161070674 61 - TSS region transcription start site region 14568
Cenpl 1 161070767 to 161086724 15957 + protein coding gene centromere protein L
Tssr9679 1 161070924 to 161071006 82 + TSS region transcription start site region 9679
Tssr14569 1 161071195 to 161071232 37 - TSS region transcription start site region 14569
Tssr14570 1 161071405 to 161071417 12 - TSS region transcription start site region 14570
Klhl20 1 161088375 to 161131510 43135 - protein coding gene kelch-like 20
Cpgi923 1 161131051 to 161131652 601 CpG island CpG island 923
Tssr14571 1 161131428 to 161131486 58 - TSS region transcription start site region 14571
Cpgi924 1 161142549 to 161143025 476 CpG island CpG island 924
Tssr9680 1 161142661 to 161142701 40 + TSS region transcription start site region 9680
Ankrd45 1 161142691 to 161170498 27807 + protein coding gene ankyrin repeat domain 45
Tssr9681 1 161142706 to 161142744 38 + TSS region transcription start site region 9681
Tssr9682 1 161150984 to 161150988 4 + TSS region transcription start site region 9682
Tex50 1 161156843 to 161159314 2471 - protein coding gene testis expressed 50
Tssr14572 1 161156955 to 161156956 1 - TSS region transcription start site region 14572
Tssr14573 1 161159310 to 161159314 4 - TSS region transcription start site region 14573
Cpgi925 1 161170592 to 161171070 478 CpG island CpG island 925
Tssr9683 1 161175601 to 161175620 19 + TSS region transcription start site region 9683
Tssr9684 1 161175629 to 161175641 12 + TSS region transcription start site region 9684
Gm6185 1 161178704 to 161235173 56469 + pseudogene predicted gene 6185
Prdx6 1 161240112 to 161251210 11098 - protein coding gene peroxiredoxin 6
Tssr14574 1 161241661 to 161241680 19 - TSS region transcription start site region 14574
Tssr14575 1 161241769 to 161241791 22 - TSS region transcription start site region 14575
Tssr14576 1 161243612 to 161243641 29 - TSS region transcription start site region 14576
Cpgi926 1 161250509 to 161251430 921 CpG island CpG island 926
Tssr14577 1 161250884 to 161250909 25 - TSS region transcription start site region 14577
Tssr14578 1 161251128 to 161251139 11 - TSS region transcription start site region 14578
Tssr14579 1 161251141 to 161251144 3 - TSS region transcription start site region 14579
Tssr14580 1 161251153 to 161251186 33 - TSS region transcription start site region 14580
Tssr14581 1 161251502 to 161251528 26 - TSS region transcription start site region 14581
Gm19057 1 161297833 to 161298905 1072 - pseudogene predicted gene, 19057
Tssr9685 1 161395431 to 161395439 8 + TSS region transcription start site region 9685
Tnfsf4 1 161395438 to 161418206 22768 + protein coding gene tumor necrosis factor (ligand) superfamily, member 4
Tssr9686 1 161395540 to 161395550 10 + TSS region transcription start site region 9686
Tssr9687 1 161396631 to 161396640 9 + TSS region transcription start site region 9687
Tssr9688 1 161396863 to 161396865 2 + TSS region transcription start site region 9688
Tssr9689 1 161417810 to 161417853 43 + TSS region transcription start site region 9689
Tssr9690 1 161494649 to 161494656 7 + TSS region transcription start site region 9690
Tnfsf18 1 161494657 to 161505290 10633 + protein coding gene tumor necrosis factor (ligand) superfamily, member 18
Gm31815 1 161517219 to 161591458 74239 - lncRNA gene predicted gene, 31815
Gm25488 1 161552549 to 161552666 117 - rRNA gene predicted gene, 25488
Gm5704 1 161597102 to 161598488 1386 + pseudogene predicted gene 5704
Cnes4 1 161621573 to 161621573 0 QTL C. neoformans susceptibility locus 4
Tssr14582 1 161647124 to 161647135 11 - TSS region transcription start site region 14582
Tssr9691 1 161701371 to 161701383 12 + TSS region transcription start site region 9691
D1Mit266.1 1 161703636 to 161703749 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 266.1
D1Mit266 1 161703778 to 161704023 245 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 266
Opfa 1 161703778 to 161704023 245 QTL open field activity
Tssr14583 1 161704659 to 161704679 20 - TSS region transcription start site region 14583
Tssr9692 1 161704823 to 161704834 11 + TSS region transcription start site region 9692
Tssr9693 1 161704865 to 161704871 6 + TSS region transcription start site region 9693
Tssr9694 1 161705497 to 161705516 19 + TSS region transcription start site region 9694
Tssr9695 1 161706069 to 161706073 4 + TSS region transcription start site region 9695
Cpgi927 1 161712996 to 161713168 172 CpG island CpG island 927
Gm37638 1 161713705 to 161714827 1122 + unclassified gene predicted gene, 37638
Gm15429 1 161726242 to 161727489 1247 - pseudogene predicted pseudogene 15429
Gm5049 1 161746185 to 161747645 1460 + pseudogene predicted gene 5049
Tssr9696 1 161747540 to 161747551 11 + TSS region transcription start site region 9696
Gm31869 1 161762401 to 161767502 5101 - lncRNA gene predicted gene, 31869
Tssr9697 1 161766041 to 161766069 28 + TSS region transcription start site region 9697
Tssr14584 1 161766723 to 161766733 10 - TSS region transcription start site region 14584
Tssr14585 1 161775189 to 161775206 17 - TSS region transcription start site region 14585
D1Ins1 1 161779041 to 161779155 114 DNA segment DNA segment, INSERM 1
Fasl 1 161780691 to 161788495 7804 - protein coding gene Fas ligand (TNF superfamily, member 6)
Tssr14586 1 161788359 to 161788375 16 - TSS region transcription start site region 14586
Tssr14587 1 161788449 to 161788456 7 - TSS region transcription start site region 14587
Tssr14588 1 161788464 to 161788471 7 - TSS region transcription start site region 14588
Tssr14589 1 161788472 to 161788483 11 - TSS region transcription start site region 14589
Tssr14590 1 161788489 to 161788496 7 - TSS region transcription start site region 14590
Tssr14591 1 161788500 to 161788506 6 - TSS region transcription start site region 14591
Tssr14592 1 161793248 to 161793252 4 - TSS region transcription start site region 14592
Tssr14593 1 161794564 to 161794600 36 - TSS region transcription start site region 14593
Gm37357 1 161811045 to 161814167 3122 - unclassified gene predicted gene, 37357
Suco 1 161816114 to 161876682 60568 - protein coding gene SUN domain containing ossification factor
Tssr14594 1 161816706 to 161816709 3 - TSS region transcription start site region 14594
Gm7496 1 161821865 to 161823068 1203 + pseudogene predicted gene 7496
Tssr14595 1 161834496 to 161834510 14 - TSS region transcription start site region 14595
Tssr14596 1 161852782 to 161852786 4 - TSS region transcription start site region 14596
Tssr14597 1 161855550 to 161855561 11 - TSS region transcription start site region 14597
Tssr9698 1 161864461 to 161864462 1 + TSS region transcription start site region 9698
Tssr14598 1 161867110 to 161867115 5 - TSS region transcription start site region 14598
Tssr9699 1 161876011 to 161876041 30 + TSS region transcription start site region 9699
Cpgi928 1 161876159 to 161877141 982 CpG island CpG island 928
Tssr14599 1 161876588 to 161876607 19 - TSS region transcription start site region 14599
Tssr14600 1 161876610 to 161876647 37 - TSS region transcription start site region 14600
Tssr14601 1 161876656 to 161876682 26 - TSS region transcription start site region 14601
Tssr14602 1 161876747 to 161876759 12 - TSS region transcription start site region 14602
Tssr14603 1 161876780 to 161876821 41 - TSS region transcription start site region 14603
Tssr14604 1 161876834 to 161876854 20 - TSS region transcription start site region 14604
Tssr9700 1 161877853 to 161877865 12 + TSS region transcription start site region 9700
Gm31925 1 161890458 to 161903173 12715 + lincRNA gene predicted gene, 31925
Tssr14605 1 161896170 to 161896174 4 - TSS region transcription start site region 14605
Tssr9701 1 161896346 to 161896358 12 + TSS region transcription start site region 9701
Tssr9702 1 161896368 to 161896381 13 + TSS region transcription start site region 9702
Tssr9703 1 161896382 to 161896385 3 + TSS region transcription start site region 9703
Tssr9704 1 161896392 to 161896397 5 + TSS region transcription start site region 9704
Tssr14606 1 161897331 to 161897341 10 - TSS region transcription start site region 14606
4930558K02Rik 1 161942086 to 161979636 37550 - protein coding gene RIKEN cDNA 4930558K02 gene
Tssr9705 1 161968953 to 161968971 18 + TSS region transcription start site region 9705
Cpgi929 1 161968983 to 161969552 569 CpG island CpG island 929
Tssr14607 1 161969159 to 161969190 31 - TSS region transcription start site region 14607
Tssr9706 1 161969179 to 161969259 80 + TSS region transcription start site region 9706
Pigc 1 161969186 to 161973435 4249 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class C
Gm38304 1 161969200 to 162027106 57906 + antisense lncRNA gene predicted gene, 38304
Tssr9707 1 161969284 to 161969313 29 + TSS region transcription start site region 9707
Tssr14608 1 161979656 to 161979681 25 - TSS region transcription start site region 14608
Tssr14609 1 161979684 to 161979687 3 - TSS region transcription start site region 14609
Tssr14610 1 161979700 to 161979705 5 - TSS region transcription start site region 14610
D1Pgn2 1 161981984 to 161982159 175 DNA segment DNA segment, Chr 1, Paigen 2
Dnm3 1 161982453 to 162478034 495581 - protein coding gene dynamin 3
Tssr14611 1 161985701 to 161985704 3 - TSS region transcription start site region 14611
2810442N19Rik 1 162004969 to 162016485 11516 + antisense lncRNA gene RIKEN cDNA 2810442N19 gene
D1Mit504 1 162012348 to 162012496 148 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 504
Tssr14612 1 162028710 to 162028714 4 - TSS region transcription start site region 14612
D1Pgn5 1 162035011 to 162035207 196 DNA segment DNA segment, Chr 1, Paigen 5
D1Mit398 1 162036074 to 162036174 100 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 398
Gm37767 1 162086635 to 162088468 1833 - unclassified gene predicted gene, 37767
Tssr14613 1 162134704 to 162134733 29 - TSS region transcription start site region 14613
Tssr14614 1 162188851 to 162188859 8 - TSS region transcription start site region 14614
D1Mit505 1 162210337 to 162210475 138 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 505
Tssr9708 1 162217487 to 162217508 21 + TSS region transcription start site region 9708
Dnm3os 1 162217623 to 162225550 7927 + antisense lncRNA gene dynamin 3, opposite strand
Tssr9709 1 162217657 to 162217671 14 + TSS region transcription start site region 9709
Tssr9710 1 162217688 to 162217717 29 + TSS region transcription start site region 9710
Mir199a-2 1 162217814 to 162217923 109 + miRNA gene microRNA 199a-2
Tssr9711 1 162217903 to 162217906 3 + TSS region transcription start site region 9711
Tssr9712 1 162218852 to 162218856 4 + TSS region transcription start site region 9712
Tssr9713 1 162221295 to 162221299 4 + TSS region transcription start site region 9713
Mir214 1 162223368 to 162223477 109 + miRNA gene microRNA 214
Tssr9714 1 162223459 to 162223461 2 + TSS region transcription start site region 9714
Tssr14615 1 162246773 to 162246775 2 - TSS region transcription start site region 14615
Aath2 1 162250061 to 162250061 0 QTL aortic arch atherosclerosis 2
Tssr14616 1 162274621 to 162274626 5 - TSS region transcription start site region 14616
Gm16101 1 162316092 to 162316521 429 + pseudogene predicted gene 16101
Elnt 1 162317638 to 194429220 32111582 QTL escape latencies during navigation task
Cfbw1 1 162317638 to 162317756 118 QTL cystic fibrosis body weight 1
D1Mit106 1 162317638 to 162317756 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 106
D1Mit107 1 162365239 to 162365340 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 107